Wall clock time and date at job start Tue Mar 31 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35851 * 126.13513 * 2 1 4 4 N 1.30173 * 109.00193 * 180.02562 * 3 2 1 5 5 C 1.35757 * 108.86870 * 0.02562 * 4 3 2 6 6 C 1.47328 * 126.23856 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00271 * 180.02562 * 6 5 4 8 8 N 1.34772 * 119.99475 * 359.97438 * 6 5 4 9 9 C 1.46506 * 119.99710 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.88366 * 31.12741 * 9 8 6 11 11 C 1.55157 * 111.00379 * 155.00044 * 9 8 6 12 12 C 1.54321 * 102.94324 * 153.57763 * 11 9 8 13 13 N 1.47025 * 107.27087 * 337.80899 * 12 11 9 14 14 C 1.34779 * 125.64812 * 178.88742 * 13 12 11 15 15 O 1.21278 * 119.99831 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99853 * 0.03394 * 14 13 12 17 17 S 1.81002 * 109.46696 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99835 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99781 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00299 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99705 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47013 * 90.00136 * 22 20 18 24 24 H 1.48502 * 109.47056 * 209.99849 * 22 20 18 25 25 H 1.48495 * 109.46931 * 329.99829 * 22 20 18 26 26 C 1.47424 * 108.70215 * 358.94322 * 13 12 11 27 27 C 1.35378 * 126.13544 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47110 * 269.97381 * 1 2 3 29 29 H 1.09000 * 109.47079 * 29.97050 * 1 2 3 30 30 H 1.09002 * 109.46912 * 149.97272 * 1 2 3 31 31 H 1.07995 * 125.49785 * 0.02562 * 3 2 1 32 32 H 0.96998 * 120.00575 * 0.02562 * 8 6 5 33 33 H 1.08993 * 110.72376 * 271.94347 * 11 9 8 34 34 H 1.09002 * 110.71676 * 35.21910 * 11 9 8 35 35 H 1.09000 * 109.88074 * 97.22657 * 12 11 9 36 36 H 1.09000 * 109.88427 * 218.39059 * 12 11 9 37 37 H 1.08999 * 109.47021 * 299.98941 * 16 14 13 38 38 H 1.08997 * 109.47193 * 59.99469 * 16 14 13 39 39 H 0.97005 * 120.00418 * 180.02562 * 21 20 18 40 40 H 1.09002 * 110.36287 * 265.28266 * 26 13 12 41 41 H 1.08997 * 110.36900 * 142.97070 * 26 13 12 42 42 H 1.08000 * 126.56523 * 0.23989 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5101 0.7137 -0.0006 5 6 3.5512 -0.6433 -0.0015 6 6 4.7653 -1.4778 -0.0029 7 8 4.6699 -2.6903 -0.0041 8 7 5.9817 -0.8975 -0.0038 9 6 7.1891 -1.7274 -0.0046 10 1 7.0151 -2.6660 -0.5309 11 6 8.3905 -0.9605 -0.6178 12 6 9.6074 -1.6293 0.0556 13 7 9.1302 -2.2538 1.2981 14 6 9.8859 -2.9578 2.1640 15 8 9.3839 -3.4305 3.1617 16 6 11.3548 -3.1575 1.8925 17 16 12.0875 -4.1355 3.2277 18 6 13.7568 -4.2139 2.6689 19 1 14.0400 -3.7324 1.7446 20 6 14.7074 -4.8953 3.4162 21 7 14.3622 -5.4825 4.5424 22 14 16.4770 -4.9789 2.8234 23 1 17.2367 -3.8253 3.3686 24 1 17.0964 -6.2450 3.2911 25 1 16.5045 -4.9330 1.3394 26 6 7.6878 -1.9836 1.4393 27 6 2.2633 -1.0933 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3633 -0.8898 -0.5143 31 1 1.9258 2.1221 0.0004 32 1 6.0579 0.0694 -0.0032 33 1 8.4244 -1.0973 -1.6985 34 1 8.3426 0.0982 -0.3632 35 1 10.0251 -2.3894 -0.6046 36 1 10.3635 -0.8784 0.2848 37 1 11.4811 -3.6825 0.9457 38 1 11.8495 -2.1877 1.8392 39 1 15.0267 -5.9584 5.0649 40 1 7.5261 -1.1013 2.0587 41 1 7.1802 -2.8474 1.8684 42 1 1.9422 -2.1245 -0.0046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493258687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:25 Heat of formation + Delta-G solvation = -0.656786 kcal Electronic energy + Delta-G solvation = -25389.975722 eV Core-core repulsion = 21497.675895 eV Total energy + Delta-G solvation = -3892.299827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.62293 -40.16116 -39.05802 -37.14321 -34.73958 -34.18673 -32.38989 -31.05068 -30.21904 -29.60831 -28.26500 -27.34123 -25.45141 -24.08165 -23.03094 -21.75203 -21.13621 -20.45011 -19.28777 -18.39070 -17.65569 -16.90091 -16.61901 -16.39412 -16.27480 -15.46779 -15.17568 -14.77672 -14.73147 -14.65690 -14.29296 -14.13971 -13.91079 -13.68696 -13.51114 -13.40803 -13.36701 -12.87610 -12.57804 -12.49768 -11.93918 -11.80810 -11.64568 -11.04990 -11.02419 -10.97867 -10.77970 -10.73260 -10.29735 -10.28730 -9.78241 -9.46155 -9.27869 -9.03799 -9.02702 -8.43866 -8.18253 -6.45565 -6.17455 -3.87913 1.18950 1.97957 2.09328 2.74945 3.11327 3.16408 3.25457 3.26776 3.30976 3.34940 3.68774 3.96328 4.05366 4.23679 4.27553 4.28771 4.43723 4.47765 4.71646 4.73287 4.77319 5.00552 5.06357 5.14329 5.17537 5.19800 5.51323 5.51726 5.55964 5.66418 5.75413 5.83389 5.91204 5.95863 5.99818 6.18673 6.22470 6.46751 6.50331 7.16144 7.45516 7.63397 7.71924 8.03983 8.39269 8.62043 9.27599 10.89979 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.001749 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.307703 B =16001.725461 C =16376.994393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.461 5.461 3 C 0.186 3.814 4 N -0.464 5.464 5 C -0.064 4.064 6 C 0.606 3.394 7 O -0.539 6.539 8 N -0.706 5.706 9 C 0.132 3.868 10 H 0.109 0.891 11 C -0.136 4.136 12 C 0.104 3.896 13 N -0.625 5.625 14 C 0.549 3.451 15 O -0.514 6.514 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.098 3.902 27 C 0.036 3.964 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.212 0.788 32 H 0.410 0.590 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.226 16.655 -14.922 36.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.098 4.098 4 N -0.183 5.183 5 C -0.193 4.193 6 C 0.392 3.608 7 O -0.415 6.415 8 N -0.357 5.357 9 C 0.026 3.974 10 H 0.127 0.873 11 C -0.175 4.175 12 C -0.019 4.019 13 N -0.364 5.364 14 C 0.337 3.663 15 O -0.387 6.387 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.026 4.026 27 C -0.103 4.103 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.229 0.771 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -28.352 15.429 -13.221 34.880 hybrid contribution 0.939 0.635 -1.516 1.893 sum -27.412 16.064 -14.736 35.023 Atomic orbital electron populations 1.22179 0.75610 1.05261 1.04260 1.45368 1.08384 1.06918 1.53630 1.25207 0.85130 0.93645 1.05827 1.70589 1.19640 1.10304 1.17731 1.20519 0.93108 0.90539 1.15116 1.16904 0.81953 0.86385 0.75525 1.90841 1.86745 1.13352 1.50564 1.45596 1.04512 1.10704 1.74867 1.22125 0.83485 0.95638 0.96139 0.87273 1.22927 0.93240 1.00231 1.01071 1.21966 0.96586 0.97387 0.86002 1.48398 1.09051 1.55075 1.23839 1.20038 0.87978 0.76476 0.81769 1.90715 1.73693 1.47723 1.26611 1.23504 0.93589 1.05584 1.06975 1.85425 1.06194 1.66143 1.25674 1.22866 0.94000 1.40152 1.11284 0.90914 1.24988 0.99352 0.94604 0.94629 1.70021 1.34674 1.32475 1.13109 0.86167 0.82636 0.77732 0.78950 1.20294 1.20768 1.19696 1.22488 0.81610 1.02123 0.96387 1.22653 0.90196 0.93336 1.04123 0.89911 0.88909 0.89137 0.77114 0.75379 0.89175 0.89816 0.90811 0.90786 0.89203 0.89252 0.92206 0.91439 0.89838 0.79360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.03 11.15 59.85 0.67 0.70 16 2 N -0.46 -2.28 3.13 -125.78 -0.39 -2.67 16 3 C 0.19 1.07 12.55 -89.90 -1.13 -0.06 16 4 N -0.46 -4.24 11.01 -11.03 -0.12 -4.36 16 5 C -0.06 -0.66 6.98 -83.09 -0.58 -1.24 16 6 C 0.61 7.40 7.81 -12.57 -0.10 7.30 16 7 O -0.54 -8.25 16.52 5.26 0.09 -8.16 16 8 N -0.71 -7.23 5.19 -52.83 -0.27 -7.50 16 9 C 0.13 1.44 3.42 -65.78 -0.23 1.21 16 10 H 0.11 1.34 7.54 -51.93 -0.39 0.95 16 11 C -0.14 -1.12 6.60 -24.90 -0.16 -1.29 16 12 C 0.10 1.15 6.49 -3.06 -0.02 1.13 16 13 N -0.63 -9.73 3.33 -170.52 -0.57 -10.29 16 14 C 0.55 11.26 7.87 -10.98 -0.09 11.18 16 15 O -0.51 -12.69 16.12 5.56 0.09 -12.60 16 16 C -0.15 -3.11 5.35 36.01 0.19 -2.91 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.52 9.50 30.94 0.29 -15.23 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.59 13.22 55.49 0.73 -25.85 16 22 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.10 1.39 6.60 -2.53 -0.02 1.37 16 27 C 0.04 0.28 11.26 -16.64 -0.19 0.09 16 28 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 29 H 0.09 -0.13 8.14 -51.93 -0.42 -0.56 16 30 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 31 H 0.21 0.35 8.06 -52.49 -0.42 -0.08 16 32 H 0.41 3.53 8.28 -40.82 -0.34 3.19 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.57 8.00 -51.93 -0.42 0.16 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 42 H 0.19 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -40.13 378.39 -9.18 -49.32 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.76 Total: -0.62 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.45 Total: 4.29 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.62 Total: -50.68 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.18 Total: -20.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.13 -9.18 -49.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493258687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.658 kcal (2) G-P(sol) polarization free energy of solvation -40.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds