Wall clock time and date at job start Tue Mar 31 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35851 * 126.13513 * 2 1 4 4 N 1.30173 * 109.00193 * 180.02562 * 3 2 1 5 5 C 1.35757 * 108.86870 * 0.02562 * 4 3 2 6 6 C 1.47328 * 126.23856 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00271 * 180.02562 * 6 5 4 8 8 N 1.34772 * 119.99475 * 359.97438 * 6 5 4 9 9 C 1.46506 * 119.99710 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.88366 * 31.12741 * 9 8 6 11 11 C 1.55157 * 111.00379 * 155.00044 * 9 8 6 12 12 C 1.54321 * 102.94324 * 153.57763 * 11 9 8 13 13 N 1.47025 * 107.27087 * 337.80899 * 12 11 9 14 14 C 1.34779 * 125.64812 * 178.88742 * 13 12 11 15 15 O 1.21278 * 119.99831 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99853 * 0.03394 * 14 13 12 17 17 S 1.81002 * 109.46696 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99835 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99781 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00299 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99705 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47013 * 90.00136 * 22 20 18 24 24 H 1.48502 * 109.47056 * 209.99849 * 22 20 18 25 25 H 1.48495 * 109.46931 * 329.99829 * 22 20 18 26 26 C 1.47424 * 108.70215 * 358.94322 * 13 12 11 27 27 C 1.35378 * 126.13544 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47110 * 269.97381 * 1 2 3 29 29 H 1.09000 * 109.47079 * 29.97050 * 1 2 3 30 30 H 1.09002 * 109.46912 * 149.97272 * 1 2 3 31 31 H 1.07995 * 125.49785 * 0.02562 * 3 2 1 32 32 H 0.96998 * 120.00575 * 0.02562 * 8 6 5 33 33 H 1.08993 * 110.72376 * 271.94347 * 11 9 8 34 34 H 1.09002 * 110.71676 * 35.21910 * 11 9 8 35 35 H 1.09000 * 109.88074 * 97.22657 * 12 11 9 36 36 H 1.09000 * 109.88427 * 218.39059 * 12 11 9 37 37 H 1.08999 * 109.47021 * 299.98941 * 16 14 13 38 38 H 1.08997 * 109.47193 * 59.99469 * 16 14 13 39 39 H 0.97005 * 120.00418 * 180.02562 * 21 20 18 40 40 H 1.09002 * 110.36287 * 265.28266 * 26 13 12 41 41 H 1.08997 * 110.36900 * 142.97070 * 26 13 12 42 42 H 1.08000 * 126.56523 * 0.23989 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5101 0.7137 -0.0006 5 6 3.5512 -0.6433 -0.0015 6 6 4.7653 -1.4778 -0.0029 7 8 4.6699 -2.6903 -0.0041 8 7 5.9817 -0.8975 -0.0038 9 6 7.1891 -1.7274 -0.0046 10 1 7.0151 -2.6660 -0.5309 11 6 8.3905 -0.9605 -0.6178 12 6 9.6074 -1.6293 0.0556 13 7 9.1302 -2.2538 1.2981 14 6 9.8859 -2.9578 2.1640 15 8 9.3839 -3.4305 3.1617 16 6 11.3548 -3.1575 1.8925 17 16 12.0875 -4.1355 3.2277 18 6 13.7568 -4.2139 2.6689 19 1 14.0400 -3.7324 1.7446 20 6 14.7074 -4.8953 3.4162 21 7 14.3622 -5.4825 4.5424 22 14 16.4770 -4.9789 2.8234 23 1 17.2367 -3.8253 3.3686 24 1 17.0964 -6.2450 3.2911 25 1 16.5045 -4.9330 1.3394 26 6 7.6878 -1.9836 1.4393 27 6 2.2633 -1.0933 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3633 -0.8898 -0.5143 31 1 1.9258 2.1221 0.0004 32 1 6.0579 0.0694 -0.0032 33 1 8.4244 -1.0973 -1.6985 34 1 8.3426 0.0982 -0.3632 35 1 10.0251 -2.3894 -0.6046 36 1 10.3635 -0.8784 0.2848 37 1 11.4811 -3.6825 0.9457 38 1 11.8495 -2.1877 1.8392 39 1 15.0267 -5.9584 5.0649 40 1 7.5261 -1.1013 2.0587 41 1 7.1802 -2.8474 1.8684 42 1 1.9422 -2.1245 -0.0046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493258687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:24 Heat of formation + Delta-G solvation = -30.063795 kcal Electronic energy + Delta-G solvation = -25391.250906 eV Core-core repulsion = 21497.675895 eV Total energy + Delta-G solvation = -3893.575011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.12453 -41.30923 -40.25028 -38.44161 -35.48358 -34.93070 -34.58341 -32.27835 -30.89862 -30.81280 -29.22636 -27.91723 -27.61236 -25.05176 -23.92872 -22.30507 -21.92022 -21.26155 -20.73382 -19.65047 -18.90812 -18.13935 -17.84645 -17.06270 -16.88542 -16.85803 -16.71229 -16.41452 -15.86225 -15.62444 -15.40787 -15.08278 -14.85457 -14.65390 -14.52975 -14.36654 -14.15288 -13.85601 -13.64023 -13.44179 -13.41212 -13.15810 -12.88153 -12.81326 -12.63432 -12.60252 -11.88629 -11.74105 -11.45388 -11.15331 -11.13679 -11.04724 -10.72170 -10.30555 -10.28249 -9.76331 -9.61825 -8.68741 -8.33996 -6.13445 0.52960 1.20717 1.41788 1.43810 1.44743 1.51757 1.56163 1.70879 1.95737 2.27506 2.36064 2.48207 3.00157 3.20556 3.36127 3.45868 3.53603 3.86542 3.89875 3.96703 4.00955 4.14723 4.21763 4.23054 4.30285 4.43964 4.45830 4.49758 4.59375 4.73620 4.77762 4.78844 4.93373 5.05713 5.08581 5.20021 5.40339 5.42132 5.44174 6.10191 6.20311 6.32614 6.43666 6.84317 7.05731 7.06868 7.18409 8.75458 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.001749 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.307703 B =16001.725461 C =16376.994393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.454 5.454 3 C 0.196 3.804 4 N -0.494 5.494 5 C -0.100 4.100 6 C 0.600 3.400 7 O -0.582 6.582 8 N -0.694 5.694 9 C 0.141 3.859 10 H 0.094 0.906 11 C -0.117 4.117 12 C 0.092 3.908 13 N -0.615 5.615 14 C 0.545 3.455 15 O -0.570 6.570 16 C -0.117 4.117 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.002 2.998 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.097 3.903 27 C 0.036 3.964 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.253 0.747 32 H 0.420 0.580 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.619 19.519 -17.769 38.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.134 5.134 3 C -0.089 4.089 4 N -0.213 5.213 5 C -0.228 4.228 6 C 0.389 3.611 7 O -0.462 6.462 8 N -0.345 5.345 9 C 0.034 3.966 10 H 0.112 0.888 11 C -0.155 4.155 12 C -0.030 4.030 13 N -0.351 5.351 14 C 0.333 3.667 15 O -0.449 6.449 16 C -0.268 4.268 17 S 0.071 5.929 18 C -0.693 4.693 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.823 3.177 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.180 1.180 26 C -0.028 4.028 27 C -0.105 4.105 28 H 0.111 0.889 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.269 0.731 32 H 0.258 0.742 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -28.783 18.372 -16.128 37.763 hybrid contribution 0.831 -0.147 -0.672 1.079 sum -27.952 18.225 -16.800 37.359 Atomic orbital electron populations 1.22541 0.72746 1.07094 1.05488 1.45631 1.09972 1.05785 1.52037 1.26026 0.84343 0.95217 1.03286 1.70516 1.21823 1.09584 1.19425 1.20386 0.93040 0.91309 1.18076 1.17320 0.83043 0.86150 0.74628 1.90805 1.87423 1.15189 1.52762 1.45489 1.03833 1.11054 1.74078 1.21941 0.84854 0.96059 0.93733 0.88769 1.22935 0.89677 1.00672 1.02191 1.22415 0.98369 0.98179 0.84071 1.48315 1.09380 1.53205 1.24177 1.19911 0.87982 0.76891 0.81892 1.90691 1.74490 1.50460 1.29235 1.23287 0.93761 1.05321 1.04406 1.85666 1.08053 1.68605 1.30539 1.23202 0.93836 1.40467 1.11793 0.89661 1.26168 1.04721 0.93774 0.94542 1.70196 1.36538 1.33455 1.14699 0.84911 0.75736 0.77980 0.79071 1.19196 1.20359 1.18041 1.22571 0.80585 1.00806 0.98826 1.22823 0.90048 0.94491 1.03177 0.88922 0.86256 0.88266 0.73131 0.74162 0.86317 0.87476 0.89611 0.88894 0.87217 0.86966 0.91993 0.90785 0.93372 0.78729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.12 11.15 127.77 1.42 1.30 16 2 N -0.45 -3.53 3.13 -551.85 -1.73 -5.25 16 3 C 0.20 1.76 12.55 180.10 2.26 4.02 16 4 N -0.49 -8.44 11.01 -188.81 -2.08 -10.52 16 5 C -0.10 -2.05 6.98 40.51 0.28 -1.77 16 6 C 0.60 15.12 7.81 86.64 0.68 15.80 16 7 O -0.58 -18.88 16.52 -4.10 -0.07 -18.95 16 8 N -0.69 -13.93 5.19 -439.30 -2.28 -16.21 16 9 C 0.14 2.98 3.42 46.38 0.16 3.14 16 10 H 0.09 2.34 7.54 -2.39 -0.02 2.32 16 11 C -0.12 -1.54 6.60 31.78 0.21 -1.33 16 12 C 0.09 1.75 6.49 86.73 0.56 2.32 16 13 N -0.62 -18.88 3.33 -811.81 -2.70 -21.58 16 14 C 0.54 22.79 7.87 87.66 0.69 23.48 16 15 O -0.57 -29.73 16.12 -3.02 -0.05 -29.77 16 16 C -0.12 -4.94 5.35 71.24 0.38 -4.56 16 17 S -0.16 -9.02 20.57 -56.49 -1.16 -10.19 16 18 C -0.55 -31.78 9.50 67.95 0.65 -31.13 16 19 H 0.09 4.57 7.80 -2.91 -0.02 4.55 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -57.22 13.22 21.65 0.29 -56.93 16 22 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 26 C 0.10 2.78 6.60 86.85 0.57 3.36 16 27 C 0.04 0.54 11.26 83.72 0.94 1.49 16 28 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 30 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.25 -0.18 8.06 -2.91 -0.02 -0.21 16 32 H 0.42 6.70 8.28 -92.71 -0.77 5.94 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.00 8.00 -2.39 -0.02 0.98 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 38 H 0.11 4.21 8.14 -2.40 -0.02 4.19 16 39 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.73 8.04 -2.39 -0.02 1.71 16 42 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -93.80 378.39 1.80 -91.99 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.28 Total: 13.91 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 9.27 Total: 17.29 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -8.50 Total: -110.50 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.12 Total: -48.72 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.19 kcal Total: -93.80 1.80 -91.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493258687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.930 kcal (2) G-P(sol) polarization free energy of solvation -93.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds