Wall clock time and date at job start Tue Mar 31 2020 21:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99931 * 2 1 4 4 C 1.38831 * 119.97610 * 359.97438 * 3 2 1 5 5 C 1.38356 * 120.22124 * 179.97438 * 4 3 2 6 6 Cl 1.73607 * 119.90535 * 180.02562 * 5 4 3 7 7 C 1.38126 * 120.18696 * 0.02562 * 5 4 3 8 8 C 1.39549 * 119.94628 * 359.97438 * 7 5 4 9 9 C 1.47867 * 120.10791 * 179.97438 * 8 7 5 10 10 O 1.21552 * 119.99563 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00202 * 359.97438 * 9 8 7 12 12 C 1.46503 * 119.99787 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46793 * 180.02562 * 12 11 9 14 14 N 1.46495 * 109.47013 * 180.02562 * 13 12 11 15 15 C 1.36942 * 120.00021 * 269.99606 * 14 13 12 16 16 H 1.07998 * 120.00145 * 140.53352 * 15 14 13 17 17 C 1.38809 * 119.99527 * 320.53727 * 15 14 13 18 18 N 1.31615 * 120.00389 * 340.27734 * 17 15 14 19 19 Si 1.86810 * 119.99728 * 160.28733 * 17 15 14 20 20 H 1.48494 * 109.47127 * 59.99615 * 19 17 15 21 21 H 1.48501 * 109.46681 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46758 * 299.99542 * 19 17 15 23 23 C 1.46496 * 120.00175 * 89.99635 * 14 13 12 24 24 C 1.53007 * 117.50171 * 183.28899 * 23 14 13 25 25 C 1.53007 * 117.50055 * 114.66452 * 23 14 13 26 26 C 1.38464 * 119.97622 * 179.71935 * 3 2 1 27 27 H 1.08993 * 109.47336 * 300.00422 * 1 2 3 28 28 H 1.09002 * 109.46922 * 60.00468 * 1 2 3 29 29 H 1.09002 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.07988 * 119.88868 * 359.95639 * 4 3 2 31 31 H 1.08002 * 120.02884 * 179.97438 * 7 5 4 32 32 H 0.97000 * 119.99781 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.46659 * 299.99192 * 12 11 9 34 34 H 1.08996 * 109.47527 * 59.99847 * 12 11 9 35 35 H 1.09008 * 109.46762 * 299.99444 * 13 12 11 36 36 H 1.08996 * 109.47341 * 59.99572 * 13 12 11 37 37 H 0.97002 * 119.99880 * 175.01430 * 18 17 15 38 38 H 1.08998 * 115.55068 * 328.99715 * 23 14 13 39 39 H 1.08999 * 117.49136 * 359.97438 * 24 23 14 40 40 H 1.08997 * 117.50210 * 145.02006 * 24 23 14 41 41 H 1.08993 * 117.50142 * 214.97698 * 25 23 14 42 42 H 1.08997 * 117.49629 * 359.97438 * 25 23 14 43 43 H 1.07998 * 120.08883 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3749 -0.0005 5 6 1.9122 3.6104 0.0000 6 17 0.9580 5.0607 0.0000 7 6 3.2910 3.6931 0.0005 8 6 4.0587 2.5278 0.0011 9 6 5.5350 2.6122 0.0011 10 8 6.2018 1.5958 0.0020 11 7 6.1412 3.8159 0.0000 12 6 7.6039 3.8994 -0.0005 13 6 8.0308 5.3686 -0.0011 14 7 9.4933 5.4522 -0.0022 15 6 10.1779 5.4915 1.1832 16 1 11.1057 4.9490 1.2892 17 6 9.6791 6.2284 2.2484 18 7 8.7951 7.1797 2.0340 19 14 10.2628 5.8703 3.9865 20 1 11.7317 6.0724 4.0669 21 1 9.5844 6.7891 4.9356 22 1 9.9364 4.4650 4.3384 23 6 10.2236 5.4937 -1.2715 24 6 11.7523 5.5031 -1.2071 25 6 10.9954 6.7731 -1.6010 26 6 3.4288 1.2828 0.0059 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2111 2.3159 -0.0017 31 1 3.7745 4.6588 0.0005 32 1 5.6091 4.6269 -0.0011 33 1 7.9961 3.4078 0.8898 34 1 7.9957 3.4065 -0.8902 35 1 7.6384 5.8606 -0.8911 36 1 7.6390 5.8612 0.8889 37 1 8.3926 7.6457 2.7836 38 1 9.7578 4.9596 -2.0996 39 1 12.2145 5.4787 -0.2203 40 1 12.2924 4.9749 -1.9928 41 1 11.0377 7.0805 -2.6459 42 1 10.9594 7.5840 -0.8736 43 1 4.0180 0.3778 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493426684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:37 Heat of formation + Delta-G solvation = -3.621635 kcal Electronic energy + Delta-G solvation = -26095.536136 eV Core-core repulsion = 22168.771285 eV Total energy + Delta-G solvation = -3926.764850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70708 -39.37434 -37.72526 -37.10649 -36.45679 -34.86504 -33.27191 -31.50930 -31.02671 -30.40865 -27.74654 -27.62342 -24.72155 -23.61469 -22.84421 -21.73523 -21.26496 -20.44405 -19.78962 -18.78404 -17.04274 -16.53373 -16.44538 -16.17476 -16.06176 -15.62465 -15.39378 -14.99366 -14.83449 -14.50078 -14.08313 -13.96415 -13.62022 -13.57022 -12.79471 -12.73191 -12.60531 -12.36707 -12.22635 -11.93596 -11.60066 -11.55209 -11.34154 -11.10332 -11.04431 -10.77902 -10.72703 -10.36777 -10.18257 -9.93616 -9.79308 -9.63539 -9.29877 -9.25876 -8.66727 -8.61493 -8.51404 -6.61857 -5.86848 -3.53559 0.47236 0.89144 1.73290 2.73711 2.76356 3.32493 3.38998 3.41547 3.44872 3.62283 4.35878 4.42412 4.49135 4.68052 4.72921 4.74949 4.90120 4.92344 5.02991 5.07287 5.21343 5.26518 5.29232 5.70763 5.77608 5.89931 5.93816 5.98327 6.06076 6.10140 6.19743 6.27199 6.46899 6.49944 6.59842 6.75390 6.90917 6.93995 7.05195 7.22585 7.43997 7.74220 7.77261 8.39324 8.42990 9.06731 9.67262 10.25126 11.08757 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.002573 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.205203 B =10881.300474 C =11135.174578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.133 3.867 4 C -0.184 4.184 5 C -0.002 4.002 6 Cl -0.060 7.060 7 C -0.115 4.115 8 C -0.073 4.073 9 C 0.552 3.448 10 O -0.535 6.535 11 N -0.710 5.710 12 C 0.097 3.903 13 C 0.141 3.859 14 N -0.546 5.546 15 C -0.263 4.263 16 H 0.065 0.935 17 C 0.017 3.983 18 N -0.883 5.883 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.119 3.881 24 C -0.194 4.194 25 C -0.219 4.219 26 C -0.090 4.090 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.398 0.602 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.099 0.901 37 H 0.256 0.744 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.581 -7.794 -5.602 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.087 3.913 4 C -0.204 4.204 5 C -0.029 4.029 6 Cl -0.031 7.031 7 C -0.135 4.135 8 C -0.077 4.077 9 C 0.337 3.663 10 O -0.413 6.413 11 N -0.361 5.361 12 C -0.028 4.028 13 C 0.014 3.986 14 N -0.263 5.263 15 C -0.392 4.392 16 H 0.083 0.917 17 C -0.184 4.184 18 N -0.524 5.524 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.206 1.206 23 C 0.010 3.990 24 C -0.233 4.233 25 C -0.260 4.260 26 C -0.109 4.109 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.233 0.767 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.109 -8.388 -5.462 20.691 hybrid contribution -0.385 0.647 0.942 1.206 sum -18.494 -7.741 -4.520 20.552 Atomic orbital electron populations 1.23141 0.77981 1.04393 1.01584 1.86140 1.21663 1.25843 1.88544 1.18656 0.91795 0.84087 0.96726 1.21209 1.00876 0.90578 1.07687 1.20451 0.91554 0.87622 1.03239 1.98394 1.71785 1.36091 1.96792 1.21186 0.91648 0.99108 1.01538 1.19806 0.93868 0.92564 1.01431 1.18010 0.86365 0.84283 0.77615 1.90785 1.65683 1.34870 1.49934 1.46042 1.09458 1.07328 1.73227 1.22445 0.76106 1.02476 1.01751 1.21014 0.84877 0.90374 1.02354 1.43150 1.00461 1.82670 1.00041 1.19005 1.07767 1.23632 0.88806 0.91703 1.25242 0.99560 0.94144 0.99476 1.70039 1.31006 1.20830 1.30540 0.86475 0.78685 0.77950 0.84358 1.20544 1.21511 1.20631 1.21247 0.89975 0.97554 0.90202 1.23028 0.95984 1.02107 1.02140 1.23341 1.09139 0.93916 0.99602 1.20598 0.91187 0.98720 1.00421 0.92355 0.92380 0.87834 0.84048 0.83956 0.76723 0.91185 0.92705 0.94835 0.88296 0.93415 0.89520 0.88406 0.90732 0.91238 0.88935 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.02 10.49 -19.44 -0.20 -3.23 16 3 C 0.13 1.44 6.68 -39.28 -0.26 1.18 16 4 C -0.18 -1.74 8.81 -39.32 -0.35 -2.09 16 5 C 0.00 -0.02 6.31 -39.58 -0.25 -0.27 16 6 Cl -0.06 -0.57 28.95 -51.86 -1.50 -2.07 16 7 C -0.12 -1.31 9.32 -39.13 -0.36 -1.68 16 8 C -0.07 -0.98 5.87 -104.99 -0.62 -1.59 16 9 C 0.55 9.14 7.77 -12.32 -0.10 9.04 16 10 O -0.53 -10.72 16.35 5.32 0.09 -10.63 16 11 N -0.71 -11.44 5.51 -61.24 -0.34 -11.78 16 12 C 0.10 1.88 6.00 -4.04 -0.02 1.86 16 13 C 0.14 3.00 5.45 -4.04 -0.02 2.98 16 14 N -0.55 -12.89 2.75 -165.66 -0.46 -13.35 16 15 C -0.26 -6.81 8.47 -15.06 -0.13 -6.94 16 16 H 0.07 1.71 6.75 -52.49 -0.35 1.35 16 17 C 0.02 0.44 4.98 -17.43 -0.09 0.36 16 18 N -0.88 -23.93 11.50 55.49 0.64 -23.29 16 19 Si 0.90 20.99 29.60 -169.99 -5.03 15.96 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.12 2.48 6.56 -67.92 -0.45 2.04 16 24 C -0.19 -3.80 9.80 -26.72 -0.26 -4.06 16 25 C -0.22 -4.40 10.36 -26.72 -0.28 -4.67 16 26 C -0.09 -1.14 9.53 -39.02 -0.37 -1.51 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.14 0.99 6.28 -52.49 -0.33 0.66 16 31 H 0.14 1.44 6.40 -52.49 -0.34 1.11 16 32 H 0.40 5.40 6.50 -40.82 -0.27 5.14 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.03 0.67 8.07 -51.92 -0.42 0.25 16 36 H 0.10 2.36 5.59 -51.93 -0.29 2.07 16 37 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.10 2.09 6.46 -51.93 -0.34 1.75 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 43 H 0.15 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -30.05 376.50 -9.31 -39.36 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.62 Total: 7.60 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.56 Total: -4.24 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.15 Total: -48.41 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.12 Total: -13.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.05 -9.31 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493426684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.738 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds