Wall clock time and date at job start Tue Mar 31 2020 21:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99931 * 2 1 4 4 C 1.38831 * 119.97610 * 359.97438 * 3 2 1 5 5 C 1.38356 * 120.22124 * 179.97438 * 4 3 2 6 6 Cl 1.73607 * 119.90535 * 180.02562 * 5 4 3 7 7 C 1.38126 * 120.18696 * 0.02562 * 5 4 3 8 8 C 1.39549 * 119.94628 * 359.97438 * 7 5 4 9 9 C 1.47867 * 120.10791 * 179.97438 * 8 7 5 10 10 O 1.21552 * 119.99563 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00202 * 359.97438 * 9 8 7 12 12 C 1.46503 * 119.99787 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46793 * 180.02562 * 12 11 9 14 14 N 1.46495 * 109.47013 * 180.02562 * 13 12 11 15 15 C 1.36942 * 120.00021 * 269.99606 * 14 13 12 16 16 H 1.07998 * 120.00145 * 140.53352 * 15 14 13 17 17 C 1.38809 * 119.99527 * 320.53727 * 15 14 13 18 18 N 1.31615 * 120.00389 * 340.27734 * 17 15 14 19 19 Si 1.86810 * 119.99728 * 160.28733 * 17 15 14 20 20 H 1.48494 * 109.47127 * 59.99615 * 19 17 15 21 21 H 1.48501 * 109.46681 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46758 * 299.99542 * 19 17 15 23 23 C 1.46496 * 120.00175 * 89.99635 * 14 13 12 24 24 C 1.53007 * 117.50171 * 183.28899 * 23 14 13 25 25 C 1.53007 * 117.50055 * 114.66452 * 23 14 13 26 26 C 1.38464 * 119.97622 * 179.71935 * 3 2 1 27 27 H 1.08993 * 109.47336 * 300.00422 * 1 2 3 28 28 H 1.09002 * 109.46922 * 60.00468 * 1 2 3 29 29 H 1.09002 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.07988 * 119.88868 * 359.95639 * 4 3 2 31 31 H 1.08002 * 120.02884 * 179.97438 * 7 5 4 32 32 H 0.97000 * 119.99781 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.46659 * 299.99192 * 12 11 9 34 34 H 1.08996 * 109.47527 * 59.99847 * 12 11 9 35 35 H 1.09008 * 109.46762 * 299.99444 * 13 12 11 36 36 H 1.08996 * 109.47341 * 59.99572 * 13 12 11 37 37 H 0.97002 * 119.99880 * 175.01430 * 18 17 15 38 38 H 1.08998 * 115.55068 * 328.99715 * 23 14 13 39 39 H 1.08999 * 117.49136 * 359.97438 * 24 23 14 40 40 H 1.08997 * 117.50210 * 145.02006 * 24 23 14 41 41 H 1.08993 * 117.50142 * 214.97698 * 25 23 14 42 42 H 1.08997 * 117.49629 * 359.97438 * 25 23 14 43 43 H 1.07998 * 120.08883 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3749 -0.0005 5 6 1.9122 3.6104 0.0000 6 17 0.9580 5.0607 0.0000 7 6 3.2910 3.6931 0.0005 8 6 4.0587 2.5278 0.0011 9 6 5.5350 2.6122 0.0011 10 8 6.2018 1.5958 0.0020 11 7 6.1412 3.8159 0.0000 12 6 7.6039 3.8994 -0.0005 13 6 8.0308 5.3686 -0.0011 14 7 9.4933 5.4522 -0.0022 15 6 10.1779 5.4915 1.1832 16 1 11.1057 4.9490 1.2892 17 6 9.6791 6.2284 2.2484 18 7 8.7951 7.1797 2.0340 19 14 10.2628 5.8703 3.9865 20 1 11.7317 6.0724 4.0669 21 1 9.5844 6.7891 4.9356 22 1 9.9364 4.4650 4.3384 23 6 10.2236 5.4937 -1.2715 24 6 11.7523 5.5031 -1.2071 25 6 10.9954 6.7731 -1.6010 26 6 3.4288 1.2828 0.0059 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2111 2.3159 -0.0017 31 1 3.7745 4.6588 0.0005 32 1 5.6091 4.6269 -0.0011 33 1 7.9961 3.4078 0.8898 34 1 7.9957 3.4065 -0.8902 35 1 7.6384 5.8606 -0.8911 36 1 7.6390 5.8612 0.8889 37 1 8.3926 7.6457 2.7836 38 1 9.7578 4.9596 -2.0996 39 1 12.2145 5.4787 -0.2203 40 1 12.2924 4.9749 -1.9928 41 1 11.0377 7.0805 -2.6459 42 1 10.9594 7.5840 -0.8736 43 1 4.0180 0.3778 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493426684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:37 Heat of formation + Delta-G solvation = -20.948091 kcal Electronic energy + Delta-G solvation = -26096.287467 eV Core-core repulsion = 22168.771285 eV Total energy + Delta-G solvation = -3927.516182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64970 -40.51679 -38.85494 -38.53117 -37.30918 -36.39346 -35.01739 -32.92350 -32.18716 -31.50522 -29.28662 -28.26004 -26.45147 -24.86588 -23.74064 -23.27109 -22.84289 -21.68465 -21.48705 -19.82639 -18.26670 -17.85968 -17.43483 -17.31832 -17.15449 -16.83653 -16.77897 -16.40147 -16.30872 -15.72077 -15.64245 -14.95985 -14.82264 -14.63051 -14.44477 -14.19053 -13.78042 -13.42643 -13.30163 -13.10797 -12.91335 -12.86662 -12.63730 -12.50051 -12.29840 -12.14870 -12.10332 -11.93809 -11.86419 -11.68412 -11.34915 -11.22721 -10.89766 -10.50638 -10.25712 -9.99504 -9.46295 -8.52815 -7.82851 -5.53654 -0.47882 0.02293 0.91064 1.44091 1.47311 1.53098 1.63131 1.89375 2.32046 2.49567 2.55821 3.15060 3.37332 3.42461 3.61408 3.72871 3.84538 3.97324 4.06584 4.23479 4.31562 4.36570 4.38116 4.40232 4.41767 4.53328 4.61471 4.74774 4.79273 4.85950 4.90800 4.96310 5.02559 5.05322 5.20224 5.22616 5.30263 5.42726 5.57201 5.65112 5.73214 6.20864 6.42725 6.48717 7.07866 7.14427 7.79316 8.31468 9.07652 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.002573 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.205203 B =10881.300474 C =11135.174578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.137 3.863 4 C -0.167 4.167 5 C -0.004 4.004 6 Cl -0.047 7.047 7 C -0.114 4.114 8 C -0.086 4.086 9 C 0.553 3.447 10 O -0.576 6.576 11 N -0.702 5.702 12 C 0.119 3.881 13 C 0.149 3.851 14 N -0.564 5.564 15 C -0.266 4.266 16 H 0.055 0.945 17 C -0.025 4.025 18 N -0.906 5.906 19 Si 0.947 3.053 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.100 3.900 24 C -0.184 4.184 25 C -0.212 4.212 26 C -0.104 4.104 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.411 0.589 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.253 0.747 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.561 -7.949 -6.571 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.091 3.909 4 C -0.186 4.186 5 C -0.031 4.031 6 Cl -0.018 7.018 7 C -0.133 4.133 8 C -0.089 4.089 9 C 0.341 3.659 10 O -0.457 6.457 11 N -0.354 5.354 12 C -0.007 4.007 13 C 0.022 3.978 14 N -0.282 5.282 15 C -0.396 4.396 16 H 0.073 0.927 17 C -0.223 4.223 18 N -0.549 5.549 19 Si 0.776 3.224 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.008 4.008 24 C -0.223 4.223 25 C -0.252 4.252 26 C -0.123 4.123 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.141 0.859 30 H 0.189 0.811 31 H 0.170 0.830 32 H 0.249 0.751 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.111 -8.527 -6.445 22.775 hybrid contribution 0.126 0.651 1.187 1.359 sum -19.985 -7.876 -5.258 22.115 Atomic orbital electron populations 1.23508 0.75588 1.06251 1.02869 1.86137 1.24127 1.25329 1.88246 1.18584 0.91128 0.85079 0.96147 1.21491 1.02273 0.89538 1.05332 1.20504 0.91261 0.88464 1.02843 1.98404 1.71258 1.35463 1.96705 1.21236 0.92257 0.98700 1.01150 1.19419 0.91688 0.93728 1.04113 1.18465 0.87779 0.83437 0.76232 1.90754 1.66980 1.36140 1.51864 1.45847 1.08232 1.08167 1.73130 1.21935 0.77958 1.00743 1.00081 1.20879 0.84022 0.91106 1.01815 1.43351 1.01316 1.83070 1.00463 1.19102 1.07520 1.22869 0.90137 0.92692 1.25780 1.00186 0.94352 1.02029 1.70127 1.32129 1.21678 1.30921 0.85673 0.78251 0.77336 0.81186 1.20285 1.21474 1.20963 1.21551 0.90796 0.98633 0.89837 1.23037 0.95242 1.01930 1.02046 1.23242 1.08847 0.92677 1.00460 1.20561 0.92384 0.97984 1.01412 0.91087 0.90930 0.85939 0.81067 0.83026 0.75114 0.94423 0.92809 0.93295 0.90678 0.93733 0.87046 0.90780 0.87244 0.87945 0.92483 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.21 16 2 O -0.32 -5.80 10.49 -92.49 -0.97 -6.77 16 3 C 0.14 2.76 6.68 22.47 0.15 2.91 16 4 C -0.17 -2.72 8.81 22.44 0.20 -2.52 16 5 C 0.00 -0.07 6.31 22.27 0.14 0.07 16 6 Cl -0.05 -0.79 28.95 -2.72 -0.08 -0.87 16 7 C -0.11 -2.47 9.32 22.56 0.21 -2.26 16 8 C -0.09 -2.29 5.87 -20.10 -0.12 -2.41 16 9 C 0.55 18.76 7.77 86.79 0.67 19.44 16 10 O -0.58 -24.04 16.35 -3.88 -0.06 -24.10 16 11 N -0.70 -22.93 5.51 -465.94 -2.57 -25.49 16 12 C 0.12 4.71 6.00 86.38 0.52 5.23 16 13 C 0.15 6.40 5.45 86.38 0.47 6.87 16 14 N -0.56 -26.87 2.75 -678.02 -1.86 -28.73 16 15 C -0.27 -14.08 8.47 84.03 0.71 -13.37 16 16 H 0.06 2.97 6.75 -2.91 -0.02 2.95 16 17 C -0.02 -1.33 4.98 84.86 0.42 -0.91 16 18 N -0.91 -50.02 11.50 21.65 0.25 -49.77 16 19 Si 0.95 43.94 29.60 68.60 2.03 45.98 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 C 0.10 4.06 6.56 45.00 0.30 4.35 16 24 C -0.18 -6.97 9.80 30.60 0.30 -6.67 16 25 C -0.21 -8.23 10.36 30.60 0.32 -7.91 16 26 C -0.10 -2.64 9.53 22.63 0.22 -2.42 16 27 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 28 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.17 1.71 6.28 -2.92 -0.02 1.70 16 31 H 0.15 2.89 6.40 -2.91 -0.02 2.87 16 32 H 0.41 11.09 6.50 -92.71 -0.60 10.49 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.92 8.07 -2.38 -0.02 1.90 16 36 H 0.08 3.66 5.59 -2.39 -0.01 3.64 16 37 H 0.25 13.59 8.32 -92.71 -0.77 12.81 16 38 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 39 H 0.07 3.16 6.46 -2.39 -0.02 3.15 16 40 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.14 3.80 7.65 -2.91 -0.02 3.78 16 Total: -1.00 -66.37 376.50 2.80 -63.56 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.45 Total: 24.61 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.62 Total: 1.58 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.18 Total: -103.99 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -1.03 Total: -30.87 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -66.37 2.80 -63.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493426684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.616 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds