Wall clock time and date at job start Tue Mar 31 2020 21:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35674 * 116.99815 * 2 1 4 4 C 1.38693 * 120.13757 * 0.02562 * 3 2 1 5 5 C 1.38052 * 120.10090 * 179.97438 * 4 3 2 6 6 C 1.38644 * 120.37769 * 359.97438 * 5 4 3 7 7 Cl 1.73604 * 119.86495 * 180.02562 * 6 5 4 8 8 C 1.37896 * 120.27368 * 359.79277 * 6 5 4 9 9 C 1.39710 * 119.88848 * 0.44253 * 8 6 5 10 10 C 1.47540 * 120.18205 * 179.81424 * 9 8 6 11 11 O 1.21590 * 119.99860 * 179.72326 * 10 9 8 12 12 N 1.34774 * 120.00025 * 359.72037 * 10 9 8 13 13 C 1.46503 * 120.00134 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47482 * 174.90557 * 13 12 10 15 15 N 1.46504 * 112.90772 * 311.31953 * 14 13 12 16 16 C 1.36934 * 120.00150 * 292.51073 * 15 14 13 17 17 H 1.08001 * 119.99857 * 4.84624 * 16 15 14 18 18 C 1.38810 * 120.00397 * 184.84837 * 16 15 14 19 19 N 1.31621 * 120.00202 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99717 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47512 * 89.99851 * 20 18 16 22 22 H 1.48506 * 109.46985 * 209.99948 * 20 18 16 23 23 H 1.48505 * 109.47127 * 329.99182 * 20 18 16 24 24 C 1.53781 * 113.61722 * 180.02562 * 14 13 12 25 25 C 1.53786 * 87.07899 * 220.01851 * 24 14 13 26 26 C 1.53777 * 113.61617 * 82.56502 * 14 13 12 27 27 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47616 * 299.99736 * 1 2 3 29 29 H 1.08993 * 109.47277 * 60.00365 * 1 2 3 30 30 H 1.08001 * 119.95157 * 359.97165 * 4 3 2 31 31 H 1.07995 * 119.81685 * 180.02562 * 5 4 3 32 32 H 1.07994 * 120.05810 * 180.23029 * 8 6 5 33 33 H 0.97002 * 120.00233 * 359.97438 * 12 10 9 34 34 H 1.09001 * 109.47330 * 54.89931 * 13 12 10 35 35 H 1.09000 * 109.47012 * 294.90575 * 13 12 10 36 36 H 0.97006 * 120.00214 * 112.50504 * 15 14 13 37 37 H 0.97000 * 120.00066 * 180.02562 * 19 18 16 38 38 H 1.08994 * 113.61769 * 105.47256 * 24 14 13 39 39 H 1.08994 * 113.60960 * 334.56362 * 24 14 13 40 40 H 1.08993 * 113.61662 * 139.98040 * 25 24 14 41 41 H 1.09001 * 113.61210 * 270.88232 * 25 24 14 42 42 H 1.09006 * 113.61552 * 25.43941 * 26 14 13 43 43 H 1.08997 * 113.69856 * 254.54501 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3738 0.0005 5 6 1.9197 3.6035 0.0011 6 6 3.3038 3.6844 0.0016 7 17 4.0790 5.2377 0.0030 8 6 4.0673 2.5360 0.0059 9 6 3.4440 1.2856 0.0004 10 6 4.2546 0.0528 0.0009 11 8 3.7087 -1.0336 0.0011 12 7 5.6000 0.1310 0.0009 13 6 6.4049 -1.0932 0.0007 14 6 7.8856 -0.7300 -0.1273 15 7 8.1480 0.2205 -1.2108 16 6 7.9723 -0.1613 -2.5141 17 1 7.5659 -1.1358 -2.7411 18 6 8.3163 0.7042 -3.5433 19 7 8.1478 0.3370 -4.7960 20 14 9.0199 2.3895 -3.1505 21 1 10.4997 2.3004 -3.0645 22 1 8.6430 3.3453 -4.2228 23 1 8.4760 2.8626 -1.8522 24 6 8.8207 -1.9509 -0.1379 25 6 9.7761 -1.1280 0.7425 26 6 8.5416 -0.3389 1.2074 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 0.2136 2.3190 0.0005 31 1 1.3292 4.5077 0.0019 32 1 5.1451 2.6031 0.0101 33 1 6.0356 0.9977 0.0002 34 1 6.1108 -1.7213 -0.8401 35 1 6.2429 -1.6346 0.9328 36 1 8.4463 1.1203 -1.0050 37 1 8.3886 0.9417 -5.5152 38 1 9.2252 -2.1824 -1.1231 39 1 8.4051 -2.8234 0.3660 40 1 10.2474 -1.7081 1.5359 41 1 10.4882 -0.5303 0.1736 42 1 8.0499 -0.7713 2.0789 43 1 8.7212 0.7312 1.3103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502022693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:11 Heat of formation + Delta-G solvation = -11.003005 kcal Electronic energy + Delta-G solvation = -27391.026414 eV Core-core repulsion = 23463.941483 eV Total energy + Delta-G solvation = -3927.084931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64355 -39.31074 -38.26439 -37.72275 -36.22563 -33.95943 -33.24444 -31.69286 -30.53025 -30.10664 -27.80275 -27.10636 -25.31886 -24.22027 -23.41331 -22.31589 -21.54885 -20.17871 -18.77985 -18.16617 -17.66761 -17.23358 -16.66786 -15.94876 -15.64732 -15.38093 -14.95108 -14.84140 -14.52798 -14.27250 -14.21722 -13.92287 -13.45695 -13.35274 -12.96330 -12.71760 -12.68001 -12.38713 -12.12657 -11.98730 -11.79084 -11.49170 -11.43478 -11.20480 -11.08634 -10.90445 -10.81657 -10.44186 -10.24624 -10.16161 -9.66486 -9.54517 -9.45286 -9.33730 -8.92868 -8.49704 -8.25131 -7.35698 -5.79823 -3.17955 0.67508 1.02090 2.01273 2.93631 3.09691 3.30180 3.35210 3.42253 3.55465 3.83158 4.44084 4.50503 4.53945 4.78449 4.96163 4.97999 5.00564 5.03651 5.09407 5.18372 5.27200 5.32147 5.34065 5.44055 5.50878 5.60829 5.67655 5.87563 5.94002 6.01114 6.06562 6.12929 6.23446 6.26035 6.26080 6.49666 6.67724 6.81584 6.90289 7.03873 7.17414 7.96800 8.00226 8.38620 8.67671 9.15131 9.86602 10.04381 11.38078 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.004343 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.449404 B = 6445.150420 C = 7714.500802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.274 6.274 3 C 0.188 3.812 4 C -0.211 4.211 5 C -0.048 4.048 6 C -0.082 4.082 7 Cl -0.068 7.068 8 C -0.035 4.035 9 C -0.150 4.150 10 C 0.557 3.443 11 O -0.528 6.528 12 N -0.700 5.700 13 C 0.124 3.876 14 C 0.177 3.823 15 N -0.725 5.725 16 C -0.238 4.238 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.880 3.120 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.146 4.146 25 C -0.131 4.131 26 C -0.147 4.147 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.363 0.637 37 H 0.259 0.741 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 5.505 14.386 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.184 6.184 3 C 0.139 3.861 4 C -0.230 4.230 5 C -0.067 4.067 6 C -0.109 4.109 7 Cl -0.039 7.039 8 C -0.055 4.055 9 C -0.154 4.154 10 C 0.343 3.657 11 O -0.405 6.405 12 N -0.350 5.350 13 C -0.002 4.002 14 C 0.084 3.916 15 N -0.368 5.368 16 C -0.368 4.368 17 H 0.109 0.891 18 C -0.186 4.186 19 N -0.576 5.576 20 Si 0.711 3.289 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.186 4.186 25 C -0.168 4.168 26 C -0.184 4.184 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.197 0.803 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.344 4.513 14.140 19.305 hybrid contribution 0.540 2.121 -0.080 2.190 sum -11.804 6.634 14.060 19.520 Atomic orbital electron populations 1.23195 0.78761 1.04489 1.01136 1.86433 1.20696 1.25003 1.86276 1.19090 0.90981 0.85037 0.91014 1.21154 1.00532 0.91224 1.10053 1.20936 0.92301 0.98112 0.95320 1.20595 0.92880 0.86848 1.10582 1.98374 1.81162 1.27109 1.97238 1.21135 1.00564 0.89459 0.94298 1.19431 0.90996 0.93966 1.10985 1.17743 0.82335 0.88041 0.77624 1.90793 1.71711 1.28302 1.49742 1.45612 1.05054 1.10651 1.73686 1.21792 0.91485 0.86125 1.00765 1.20784 0.90417 0.92080 0.88305 1.42444 1.81653 1.10481 1.02226 1.18921 1.35528 1.02126 0.80196 0.89060 1.24648 1.01091 0.97869 0.95037 1.69692 1.53688 1.36369 0.97885 0.86635 0.79375 0.85788 0.77102 1.21136 1.21793 1.20481 1.23240 0.97693 0.96694 1.00934 1.22642 0.96284 0.98936 0.98941 1.23234 0.97959 1.00155 0.97103 0.87837 0.92609 0.92469 0.83983 0.84360 0.83816 0.76745 0.91144 0.92450 0.80296 0.93034 0.90103 0.91002 0.92496 0.90211 0.90043 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.27 -4.01 8.57 -40.61 -0.35 -4.35 16 3 C 0.19 2.65 6.70 -38.71 -0.26 2.39 16 4 C -0.21 -2.24 9.03 -39.48 -0.36 -2.59 16 5 C -0.05 -0.50 9.81 -39.50 -0.39 -0.88 16 6 C -0.08 -1.01 6.31 -39.56 -0.25 -1.26 16 7 Cl -0.07 -0.80 28.94 -51.86 -1.50 -2.30 16 8 C -0.04 -0.49 9.31 -39.16 -0.36 -0.85 16 9 C -0.15 -2.36 5.89 -104.85 -0.62 -2.97 16 10 C 0.56 10.33 7.76 -12.47 -0.10 10.23 16 11 O -0.53 -11.32 15.15 -16.60 -0.25 -11.57 16 12 N -0.70 -12.31 5.33 -61.35 -0.33 -12.64 16 13 C 0.12 2.24 5.06 -4.04 -0.02 2.22 16 14 C 0.18 3.11 0.91 -131.01 -0.12 2.99 16 15 N -0.73 -15.49 4.38 -46.48 -0.20 -15.70 16 16 C -0.24 -6.28 9.72 -15.06 -0.15 -6.43 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 19 N -0.93 -28.56 13.97 55.49 0.78 -27.78 16 20 Si 0.88 21.23 27.78 -169.99 -4.72 16.51 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.12 6.45 56.52 0.36 -5.76 16 24 C -0.15 -2.43 7.27 -25.92 -0.19 -2.62 16 25 C -0.13 -1.92 7.99 -25.95 -0.21 -2.13 16 26 C -0.15 -2.10 7.36 -25.96 -0.19 -2.29 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 30 H 0.14 1.06 6.30 -52.49 -0.33 0.73 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.14 1.92 6.40 -52.49 -0.34 1.58 16 33 H 0.40 6.54 6.15 -40.82 -0.25 6.29 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 36 H 0.36 7.63 5.72 -40.82 -0.23 7.40 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.08 1.57 7.79 -51.93 -0.40 1.16 16 39 H 0.07 1.06 8.10 -51.93 -0.42 0.63 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.03 7.96 -51.93 -0.41 0.61 16 43 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -33.07 369.99 -9.04 -42.11 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.73 Total: 13.01 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.31 Total: -2.87 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.24 Total: -56.11 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.60 Total: -15.92 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.72 Total: 16.51 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.07 -9.04 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502022693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.109 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds