Wall clock time and date at job start Tue Mar 31 2020 21:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35674 * 116.99815 * 2 1 4 4 C 1.38693 * 120.13757 * 0.02562 * 3 2 1 5 5 C 1.38052 * 120.10090 * 179.97438 * 4 3 2 6 6 C 1.38644 * 120.37769 * 359.97438 * 5 4 3 7 7 Cl 1.73604 * 119.86495 * 180.02562 * 6 5 4 8 8 C 1.37896 * 120.27368 * 359.79277 * 6 5 4 9 9 C 1.39710 * 119.88848 * 0.44253 * 8 6 5 10 10 C 1.47540 * 120.18205 * 179.81424 * 9 8 6 11 11 O 1.21590 * 119.99860 * 179.72326 * 10 9 8 12 12 N 1.34774 * 120.00025 * 359.72037 * 10 9 8 13 13 C 1.46503 * 120.00134 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47482 * 174.90557 * 13 12 10 15 15 N 1.46504 * 112.90772 * 311.31953 * 14 13 12 16 16 C 1.36934 * 120.00150 * 292.51073 * 15 14 13 17 17 H 1.08001 * 119.99857 * 4.84624 * 16 15 14 18 18 C 1.38810 * 120.00397 * 184.84837 * 16 15 14 19 19 N 1.31621 * 120.00202 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99717 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47512 * 89.99851 * 20 18 16 22 22 H 1.48506 * 109.46985 * 209.99948 * 20 18 16 23 23 H 1.48505 * 109.47127 * 329.99182 * 20 18 16 24 24 C 1.53781 * 113.61722 * 180.02562 * 14 13 12 25 25 C 1.53786 * 87.07899 * 220.01851 * 24 14 13 26 26 C 1.53777 * 113.61617 * 82.56502 * 14 13 12 27 27 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47616 * 299.99736 * 1 2 3 29 29 H 1.08993 * 109.47277 * 60.00365 * 1 2 3 30 30 H 1.08001 * 119.95157 * 359.97165 * 4 3 2 31 31 H 1.07995 * 119.81685 * 180.02562 * 5 4 3 32 32 H 1.07994 * 120.05810 * 180.23029 * 8 6 5 33 33 H 0.97002 * 120.00233 * 359.97438 * 12 10 9 34 34 H 1.09001 * 109.47330 * 54.89931 * 13 12 10 35 35 H 1.09000 * 109.47012 * 294.90575 * 13 12 10 36 36 H 0.97006 * 120.00214 * 112.50504 * 15 14 13 37 37 H 0.97000 * 120.00066 * 180.02562 * 19 18 16 38 38 H 1.08994 * 113.61769 * 105.47256 * 24 14 13 39 39 H 1.08994 * 113.60960 * 334.56362 * 24 14 13 40 40 H 1.08993 * 113.61662 * 139.98040 * 25 24 14 41 41 H 1.09001 * 113.61210 * 270.88232 * 25 24 14 42 42 H 1.09006 * 113.61552 * 25.43941 * 26 14 13 43 43 H 1.08997 * 113.69856 * 254.54501 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3738 0.0005 5 6 1.9197 3.6035 0.0011 6 6 3.3038 3.6844 0.0016 7 17 4.0790 5.2377 0.0030 8 6 4.0673 2.5360 0.0059 9 6 3.4440 1.2856 0.0004 10 6 4.2546 0.0528 0.0009 11 8 3.7087 -1.0336 0.0011 12 7 5.6000 0.1310 0.0009 13 6 6.4049 -1.0932 0.0007 14 6 7.8856 -0.7300 -0.1273 15 7 8.1480 0.2205 -1.2108 16 6 7.9723 -0.1613 -2.5141 17 1 7.5659 -1.1358 -2.7411 18 6 8.3163 0.7042 -3.5433 19 7 8.1478 0.3370 -4.7960 20 14 9.0199 2.3895 -3.1505 21 1 10.4997 2.3004 -3.0645 22 1 8.6430 3.3453 -4.2228 23 1 8.4760 2.8626 -1.8522 24 6 8.8207 -1.9509 -0.1379 25 6 9.7761 -1.1280 0.7425 26 6 8.5416 -0.3389 1.2074 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 0.2136 2.3190 0.0005 31 1 1.3292 4.5077 0.0019 32 1 5.1451 2.6031 0.0101 33 1 6.0356 0.9977 0.0002 34 1 6.1108 -1.7213 -0.8401 35 1 6.2429 -1.6346 0.9328 36 1 8.4463 1.1203 -1.0050 37 1 8.3886 0.9417 -5.5152 38 1 9.2252 -2.1824 -1.1231 39 1 8.4051 -2.8234 0.3660 40 1 10.2474 -1.7081 1.5359 41 1 10.4882 -0.5303 0.1736 42 1 8.0499 -0.7713 2.0789 43 1 8.7212 0.7312 1.3103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502022693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:10 Heat of formation + Delta-G solvation = -32.431466 kcal Electronic energy + Delta-G solvation = -27391.955622 eV Core-core repulsion = 23463.941483 eV Total energy + Delta-G solvation = -3928.014138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72055 -40.65352 -39.58561 -38.71201 -37.16618 -35.43898 -35.16547 -32.79352 -32.43531 -31.04302 -29.04105 -28.05182 -26.67533 -25.70243 -24.91961 -23.36009 -22.80311 -21.52954 -20.03896 -19.75054 -19.37631 -18.35595 -17.73808 -16.92100 -16.83974 -16.60829 -16.30482 -16.22522 -15.89473 -15.75571 -15.58555 -14.85802 -14.79209 -14.67285 -14.44642 -14.31495 -13.87757 -13.56684 -13.23111 -13.10748 -13.02574 -12.98149 -12.81768 -12.49163 -12.31916 -12.13552 -12.01295 -11.82726 -11.68479 -11.64259 -11.54606 -11.03246 -10.92861 -10.74627 -10.34283 -9.93332 -9.30820 -9.24455 -7.98142 -5.33246 -0.33399 0.07077 1.07983 1.36769 1.42360 1.48853 1.77809 2.21220 2.28213 2.50142 2.64683 3.31560 3.43869 3.54928 3.59133 3.74353 3.87363 3.93425 4.03369 4.07658 4.17679 4.28503 4.31692 4.39391 4.53747 4.60642 4.66270 4.74441 4.74628 4.86895 4.92380 4.98354 5.00959 5.03155 5.13787 5.32105 5.36028 5.38940 5.51782 5.67014 5.86391 6.25216 6.29783 6.61438 7.11156 7.27286 7.84344 8.04327 9.23738 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.004343 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.449404 B = 6445.150420 C = 7714.500802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.176 3.824 4 C -0.197 4.197 5 C -0.032 4.032 6 C -0.090 4.090 7 Cl -0.062 7.062 8 C -0.041 4.041 9 C -0.184 4.184 10 C 0.550 3.450 11 O -0.568 6.568 12 N -0.697 5.697 13 C 0.131 3.869 14 C 0.159 3.841 15 N -0.722 5.722 16 C -0.208 4.208 17 H 0.047 0.953 18 C -0.063 4.063 19 N -0.987 5.987 20 Si 0.950 3.050 21 H -0.282 1.282 22 H -0.304 1.304 23 H -0.241 1.241 24 C -0.150 4.150 25 C -0.121 4.121 26 C -0.125 4.125 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.180 0.820 31 H 0.175 0.825 32 H 0.142 0.858 33 H 0.403 0.597 34 H 0.026 0.974 35 H 0.078 0.922 36 H 0.370 0.630 37 H 0.255 0.745 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 8.112 17.382 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.223 6.223 3 C 0.127 3.873 4 C -0.216 4.216 5 C -0.051 4.051 6 C -0.117 4.117 7 Cl -0.033 7.033 8 C -0.060 4.060 9 C -0.188 4.188 10 C 0.338 3.662 11 O -0.449 6.449 12 N -0.348 5.348 13 C 0.005 3.995 14 C 0.068 3.932 15 N -0.365 5.365 16 C -0.340 4.340 17 H 0.065 0.935 18 C -0.254 4.254 19 N -0.638 5.638 20 Si 0.777 3.223 21 H -0.208 1.208 22 H -0.231 1.231 23 H -0.165 1.165 24 C -0.190 4.190 25 C -0.158 4.158 26 C -0.163 4.163 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.197 0.803 31 H 0.192 0.808 32 H 0.160 0.840 33 H 0.240 0.760 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.204 0.796 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.260 7.128 17.214 22.869 hybrid contribution 0.689 1.192 -0.992 1.697 sum -12.572 8.320 16.222 22.145 Atomic orbital electron populations 1.23528 0.76113 1.05765 1.03128 1.86382 1.23650 1.25942 1.86311 1.19359 0.90731 0.86133 0.91090 1.21522 1.02120 0.89825 1.08098 1.21378 0.91677 0.99365 0.92682 1.20725 0.93752 0.86517 1.10659 1.98377 1.81297 1.26429 1.97222 1.21104 1.00698 0.89492 0.94723 1.19311 0.91856 0.93161 1.14454 1.18295 0.82556 0.88779 0.76535 1.90750 1.72388 1.30036 1.51753 1.45601 1.05067 1.10648 1.73451 1.21684 0.91733 0.86160 0.99916 1.21130 0.90196 0.92409 0.89501 1.42296 1.81511 1.11537 1.01194 1.18708 1.32751 0.99910 0.82581 0.93506 1.25443 1.02745 1.02495 0.94683 1.69901 1.56498 1.38101 0.99258 0.85496 0.78502 0.80174 0.78106 1.20840 1.23121 1.16464 1.23287 0.98275 0.97484 0.99920 1.22585 0.95952 0.98401 0.98869 1.23184 0.96566 1.01218 0.95333 0.87202 0.90066 0.90803 0.80279 0.80802 0.84000 0.76014 0.95504 0.90414 0.79571 0.93657 0.93892 0.88839 0.89388 0.91567 0.87296 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.31 -9.06 8.57 -68.98 -0.59 -9.65 16 3 C 0.18 4.80 6.70 22.84 0.15 4.96 16 4 C -0.20 -3.56 9.03 22.33 0.20 -3.36 16 5 C -0.03 -0.56 9.81 22.32 0.22 -0.34 16 6 C -0.09 -2.00 6.31 22.29 0.14 -1.86 16 7 Cl -0.06 -1.31 28.94 -2.72 -0.08 -1.39 16 8 C -0.04 -1.10 9.31 22.54 0.21 -0.89 16 9 C -0.18 -5.81 5.89 -20.01 -0.12 -5.92 16 10 C 0.55 21.13 7.76 86.70 0.67 21.80 16 11 O -0.57 -25.60 15.15 16.93 0.26 -25.35 16 12 N -0.70 -24.97 5.33 -466.27 -2.49 -27.46 16 13 C 0.13 4.84 5.06 86.38 0.44 5.27 16 14 C 0.16 5.52 0.91 4.13 0.00 5.52 16 15 N -0.72 -30.84 4.38 -300.98 -1.32 -32.15 16 16 C -0.21 -11.46 9.72 84.03 0.82 -10.64 16 17 H 0.05 2.96 8.06 -2.91 -0.02 2.93 16 18 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 19 N -0.99 -63.61 13.97 21.65 0.30 -63.31 16 20 Si 0.95 44.17 27.78 68.60 1.91 46.07 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 23 H -0.24 -9.55 6.45 99.48 0.64 -8.90 16 24 C -0.15 -4.96 7.27 31.12 0.23 -4.73 16 25 C -0.12 -3.24 7.99 31.10 0.25 -2.99 16 26 C -0.13 -3.19 7.36 31.10 0.23 -2.96 16 27 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 0.85 7.66 -2.39 -0.02 0.83 16 29 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 30 H 0.18 1.82 6.30 -2.91 -0.02 1.80 16 31 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.14 3.69 6.40 -2.91 -0.02 3.67 16 33 H 0.40 13.19 6.15 -92.71 -0.57 12.62 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 2.52 7.94 -2.39 -0.02 2.51 16 36 H 0.37 14.87 5.72 -92.70 -0.53 14.34 16 37 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 38 H 0.04 1.73 7.79 -2.39 -0.02 1.71 16 39 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.11 2.26 7.96 -2.38 -0.02 2.24 16 43 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -78.19 369.99 2.90 -75.29 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.11 Total: 35.99 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 5.02 Total: 1.95 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -3.50 Total: -122.92 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.33 Total: -34.99 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.91 Total: 46.07 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -78.19 2.90 -75.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502022693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.854 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds