Wall clock time and date at job start Tue Mar 31 2020 21:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35668 * 117.00301 * 2 1 4 4 C 1.38702 * 120.13559 * 0.02592 * 3 2 1 5 5 C 1.38050 * 120.10222 * 179.97438 * 4 3 2 6 6 C 1.38643 * 120.37421 * 359.97438 * 5 4 3 7 7 Cl 1.73606 * 119.86062 * 180.27847 * 6 5 4 8 8 C 1.37895 * 120.27518 * 0.02562 * 6 5 4 9 9 C 1.39708 * 119.89210 * 0.02562 * 8 6 5 10 10 C 1.47538 * 120.18293 * 179.97438 * 9 8 6 11 11 O 1.21592 * 120.00177 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00066 * 0.02562 * 10 9 8 13 13 C 1.46497 * 120.00092 * 180.02562 * 12 10 9 14 14 C 1.53783 * 113.61366 * 254.13347 * 13 12 10 15 15 C 1.53951 * 87.01952 * 220.04675 * 14 13 12 16 16 C 1.53005 * 113.66666 * 139.92917 * 15 14 13 17 17 N 1.46502 * 109.46608 * 87.44268 * 16 15 14 18 18 C 1.36940 * 119.99520 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00286 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99714 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99680 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00151 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47228 * 89.99528 * 22 20 18 24 24 H 1.48502 * 109.47164 * 209.99615 * 22 20 18 25 25 H 1.48498 * 109.46878 * 329.99304 * 22 20 18 26 26 C 1.53783 * 113.61574 * 156.52314 * 13 12 10 27 27 H 1.08995 * 109.47105 * 59.99834 * 1 2 3 28 28 H 1.09008 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47052 * 299.99764 * 1 2 3 30 30 H 1.08007 * 119.94778 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.81498 * 180.02562 * 5 4 3 32 32 H 1.08003 * 120.04979 * 179.97438 * 8 6 5 33 33 H 0.97000 * 119.99986 * 359.97438 * 12 10 9 34 34 H 1.09005 * 112.85012 * 25.32811 * 13 12 10 35 35 H 1.09001 * 113.61285 * 334.56635 * 14 13 12 36 36 H 1.08997 * 113.61359 * 105.46592 * 14 13 12 37 37 H 1.08998 * 113.61422 * 270.80281 * 15 14 13 38 38 H 1.09001 * 109.47255 * 207.43842 * 16 15 14 39 39 H 1.08998 * 109.47303 * 327.44245 * 16 15 14 40 40 H 0.96999 * 120.00098 * 0.02562 * 17 16 15 41 41 H 0.97010 * 119.99768 * 180.02562 * 21 20 18 42 42 H 1.08991 * 113.61753 * 254.52813 * 26 13 12 43 43 H 1.09000 * 113.61002 * 25.34997 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2924 2.3738 0.0005 5 6 1.9199 3.6035 0.0011 6 6 3.3040 3.6842 0.0016 7 17 4.0792 5.2375 0.0096 8 6 4.0674 2.5358 0.0011 9 6 3.4441 1.2855 -0.0005 10 6 4.2546 0.0526 -0.0017 11 8 3.7087 -1.0338 -0.0026 12 7 5.6001 0.1307 -0.0007 13 6 6.4049 -1.0934 -0.0024 14 6 7.0643 -1.3990 1.3529 15 6 8.3103 -1.8309 0.5585 16 6 9.6290 -1.3881 1.1957 17 7 10.0675 -2.3980 2.1622 18 6 11.2314 -2.2172 2.8607 19 1 11.8257 -1.3300 2.6995 20 6 11.6466 -3.1738 3.7769 21 7 12.7650 -2.9998 4.4487 22 14 10.6183 -4.7080 4.0563 23 1 11.0554 -5.7743 3.1197 24 1 10.7953 -5.1746 5.4550 25 1 9.1867 -4.3948 3.8165 26 6 7.8236 -0.8971 -0.5624 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2137 2.3189 0.0014 31 1 1.3294 4.5077 0.0019 32 1 5.1453 2.6029 0.0011 33 1 6.0356 0.9975 0.0005 34 1 5.8791 -1.9451 -0.4340 35 1 7.2247 -0.5147 1.9697 36 1 6.5874 -2.2146 1.8964 37 1 8.3072 -2.8849 0.2807 38 1 10.3867 -1.2738 0.4205 39 1 9.4843 -0.4357 1.7057 40 1 9.5339 -3.1950 2.3067 41 1 13.0554 -3.6684 5.0887 42 1 7.9589 -1.3082 -1.5627 43 1 8.1914 0.1249 -0.4714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505534154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:47 Heat of formation + Delta-G solvation = -39.198039 kcal Electronic energy + Delta-G solvation = -25905.153247 eV Core-core repulsion = 21976.845688 eV Total energy + Delta-G solvation = -3928.307559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79430 -40.71517 -39.28595 -38.70516 -37.15311 -36.47139 -34.69278 -33.31606 -32.33661 -31.04212 -28.88724 -28.15455 -26.63977 -25.74176 -24.50584 -23.34895 -22.70942 -21.59453 -20.91436 -19.61646 -19.38334 -18.31517 -17.78069 -16.98613 -16.86547 -16.62981 -16.57467 -16.12065 -15.88925 -15.84691 -15.53158 -14.92729 -14.84591 -14.69052 -14.54207 -14.26850 -13.68377 -13.57653 -13.36610 -13.19427 -13.08033 -12.94039 -12.84812 -12.73331 -12.33418 -12.19062 -12.03538 -11.94652 -11.85652 -11.68598 -11.44428 -11.32888 -10.95454 -10.84988 -10.34953 -9.99217 -9.27609 -9.25233 -8.03190 -5.35681 -0.35285 0.07492 1.10185 1.37832 1.40372 1.47875 1.72899 2.11204 2.24958 2.48041 2.60661 3.27857 3.46755 3.49792 3.55950 3.62730 3.84911 3.85043 3.91982 4.04584 4.08342 4.26271 4.29787 4.37555 4.51180 4.56387 4.60339 4.64823 4.74214 4.81654 4.88041 4.96060 4.98690 5.02712 5.04065 5.11301 5.22156 5.35074 5.41286 5.63535 5.76312 6.21568 6.26726 6.54129 7.08496 7.21380 7.86320 8.04400 9.18458 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.002278 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.981219 B =12288.921202 C =13490.776625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.174 3.826 4 C -0.201 4.201 5 C -0.034 4.034 6 C -0.091 4.091 7 Cl -0.061 7.061 8 C -0.035 4.035 9 C -0.185 4.185 10 C 0.557 3.443 11 O -0.562 6.562 12 N -0.705 5.705 13 C 0.129 3.871 14 C -0.144 4.144 15 C -0.116 4.116 16 C 0.166 3.834 17 N -0.760 5.760 18 C -0.233 4.233 19 H 0.058 0.942 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.254 1.254 26 C -0.115 4.115 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.412 0.588 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.365 0.635 41 H 0.258 0.742 42 H 0.091 0.909 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.607 16.506 -14.750 37.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.222 6.222 3 C 0.126 3.874 4 C -0.220 4.220 5 C -0.053 4.053 6 C -0.118 4.118 7 Cl -0.032 7.032 8 C -0.054 4.054 9 C -0.190 4.190 10 C 0.346 3.654 11 O -0.441 6.441 12 N -0.357 5.357 13 C 0.025 3.975 14 C -0.183 4.183 15 C -0.135 4.135 16 C 0.041 3.959 17 N -0.406 5.406 18 C -0.364 4.364 19 H 0.076 0.924 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.179 1.179 26 C -0.153 4.153 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.191 0.809 31 H 0.186 0.814 32 H 0.175 0.825 33 H 0.250 0.750 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.198 0.802 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -30.670 15.786 -14.713 37.501 hybrid contribution 0.187 -0.529 0.751 0.938 sum -30.482 15.257 -13.962 36.836 Atomic orbital electron populations 1.23505 0.76218 1.05695 1.03047 1.86370 1.23508 1.26045 1.86285 1.19417 0.91117 0.85905 0.91007 1.21501 1.02059 0.90105 1.08286 1.21375 0.92158 0.99159 0.92578 1.20744 0.93590 0.86886 1.10567 1.98394 1.81095 1.26532 1.97198 1.21167 1.01164 0.88827 0.94220 1.19273 0.91445 0.93323 1.14918 1.18270 0.82642 0.88589 0.75901 1.90804 1.72399 1.30150 1.50794 1.45829 1.05169 1.10198 1.74456 1.22413 0.90373 0.88033 0.96722 1.23536 0.96124 1.01554 0.97122 1.22537 0.93122 1.00434 0.97400 1.20775 0.93661 0.91143 0.90367 1.42777 1.25306 1.23867 1.48601 1.19079 0.98133 1.04145 1.15078 0.92421 1.25516 0.98737 1.02265 0.99227 1.69886 1.25222 1.37557 1.30858 0.85403 0.79583 0.79963 0.76828 1.20294 1.22253 1.17903 1.23239 0.92370 1.01102 0.98617 0.90431 0.87309 0.90686 0.80912 0.81389 0.82475 0.75030 0.87921 0.89665 0.92658 0.88962 0.95370 0.95487 0.80225 0.93353 0.88994 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.21 16 2 O -0.31 -6.65 8.57 -68.91 -0.59 -7.24 16 3 C 0.17 3.26 6.70 22.84 0.15 3.41 16 4 C -0.20 -2.21 9.03 22.34 0.20 -2.00 16 5 C -0.03 -0.33 9.81 22.32 0.22 -0.11 16 6 C -0.09 -1.18 6.31 22.29 0.14 -1.04 16 7 Cl -0.06 -0.77 28.94 -2.72 -0.08 -0.85 16 8 C -0.03 -0.51 9.31 22.54 0.21 -0.30 16 9 C -0.19 -3.75 5.89 -20.01 -0.12 -3.87 16 10 C 0.56 14.24 7.76 86.70 0.67 14.91 16 11 O -0.56 -19.00 14.78 16.92 0.25 -18.75 16 12 N -0.70 -14.50 5.31 -443.18 -2.35 -16.85 16 13 C 0.13 2.99 4.21 45.52 0.19 3.18 16 14 C -0.14 -3.96 7.45 31.18 0.23 -3.73 16 15 C -0.12 -3.24 3.75 -10.21 -0.04 -3.28 16 16 C 0.17 6.16 6.10 86.38 0.53 6.68 16 17 N -0.76 -36.17 5.41 -343.44 -1.86 -38.02 16 18 C -0.23 -13.60 10.47 84.03 0.88 -12.71 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.98 -64.22 13.97 21.65 0.30 -63.92 16 22 Si 0.95 46.74 27.74 68.60 1.90 48.64 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 25 H -0.25 -11.39 6.52 99.48 0.65 -10.74 16 26 C -0.11 -2.31 7.39 31.12 0.23 -2.08 16 27 H 0.08 0.44 7.66 -2.39 -0.02 0.43 16 28 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 30 H 0.17 0.78 6.30 -2.91 -0.02 0.77 16 31 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.16 1.70 6.40 -2.91 -0.02 1.68 16 33 H 0.41 5.98 6.74 -92.71 -0.62 5.35 16 34 H 0.10 2.67 7.50 -2.38 -0.02 2.65 16 35 H 0.08 2.35 7.90 -2.39 -0.02 2.33 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.03 1.01 7.85 -2.39 -0.02 0.99 16 40 H 0.36 16.73 5.53 -92.71 -0.51 16.22 16 41 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 43 H 0.10 1.78 8.07 -2.39 -0.02 1.76 16 Total: -1.00 -79.89 371.69 2.52 -77.38 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.14 Total: 22.87 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.08 Total: -3.25 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -3.91 Total: -118.80 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.34 Total: -25.99 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.90 Total: 48.64 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -79.89 2.52 -77.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505534154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.178 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds