Wall clock time and date at job start Tue Mar 31 2020 20:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35084 * 125.91024 * 2 1 4 4 C 1.35012 * 108.03086 * 180.02562 * 3 2 1 5 5 C 1.41038 * 107.84594 * 359.97438 * 4 3 2 6 6 C 1.47849 * 126.06659 * 180.02562 * 5 4 3 7 7 C 1.36730 * 126.81939 * 179.97438 * 6 5 4 8 8 C 1.41900 * 103.82076 * 179.97438 * 7 6 5 9 9 C 1.48308 * 126.84323 * 180.02562 * 8 7 6 10 10 O 1.21509 * 120.00271 * 359.97173 * 9 8 7 11 11 N 1.34773 * 120.00149 * 179.97438 * 9 8 7 12 12 C 1.39848 * 120.00441 * 174.89056 * 11 9 8 13 13 C 1.39308 * 119.94602 * 325.53171 * 12 11 9 14 14 C 1.38485 * 120.42748 * 179.76033 * 13 12 11 15 15 C 1.37696 * 120.31940 * 0.51707 * 14 13 12 16 16 C 1.40737 * 119.89122 * 359.73966 * 15 14 13 17 17 C 1.41408 * 120.20887 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99888 * 25.13988 * 17 16 15 19 19 C 1.39933 * 119.99805 * 205.12890 * 17 16 15 20 20 N 1.30827 * 120.00331 * 16.80319 * 19 17 16 21 21 Si 1.86800 * 119.99824 * 196.79781 * 19 17 16 22 22 H 1.48502 * 109.47337 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46960 * 120.00459 * 21 19 17 24 24 H 1.48496 * 109.47482 * 240.00586 * 21 19 17 25 25 C 1.38270 * 119.95172 * 145.80696 * 12 11 9 26 26 N 1.31112 * 106.31108 * 359.97438 * 8 7 6 27 27 O 1.20871 * 111.76104 * 359.97438 * 26 8 7 28 28 N 1.31819 * 107.86308 * 0.26537 * 5 4 3 29 29 H 1.09001 * 109.46984 * 90.00351 * 1 2 3 30 30 H 1.09001 * 109.47337 * 210.00484 * 1 2 3 31 31 H 1.08999 * 109.47132 * 330.00540 * 1 2 3 32 32 H 1.07997 * 125.98991 * 359.97438 * 3 2 1 33 33 H 1.08007 * 126.07683 * 180.02562 * 4 3 2 34 34 H 1.08005 * 128.08246 * 359.96030 * 7 6 5 35 35 H 0.97005 * 119.99706 * 354.88186 * 11 9 8 36 36 H 1.08006 * 119.79020 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.84312 * 180.23349 * 14 13 12 38 38 H 1.08004 * 120.05106 * 179.76228 * 15 14 13 39 39 H 0.96996 * 120.00095 * 179.97438 * 20 19 17 40 40 H 1.07999 * 120.16145 * 359.95638 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2573 1.0941 0.0000 4 6 3.5422 0.6796 -0.0006 5 6 3.5414 -0.7308 -0.0003 6 6 4.7360 -1.6019 -0.0003 7 6 4.7532 -2.9691 0.0004 8 6 6.1352 -3.2908 -0.0004 9 6 6.7323 -4.6483 -0.0007 10 8 6.0138 -5.6282 0.0004 11 7 8.0720 -4.7953 -0.0021 12 6 8.6358 -6.0706 0.1055 13 6 8.0128 -7.0428 0.8848 14 6 8.5597 -8.3103 0.9944 15 6 9.7320 -8.6204 0.3420 16 6 10.3755 -7.6468 -0.4446 17 6 11.5795 -7.9581 -1.1179 18 1 11.8029 -8.9819 -1.3792 19 6 12.4812 -6.9395 -1.4458 20 7 12.3906 -5.7725 -0.8616 21 14 13.8144 -7.2463 -2.7178 22 1 13.7025 -8.6368 -3.2268 23 1 13.6524 -6.2926 -3.8445 24 1 15.1479 -7.0531 -2.0937 25 6 9.8136 -6.3628 -0.5572 26 7 6.7791 -2.1486 -0.0021 27 8 6.0213 -1.2070 -0.0029 28 7 2.2865 -1.1344 -0.0055 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.9218 2.1206 -0.0004 33 1 4.4155 1.3151 -0.0003 34 1 3.9115 -3.6459 0.0017 35 1 8.6453 -4.0164 -0.0779 36 1 7.0951 -6.8078 1.4035 37 1 8.0668 -9.0579 1.5981 38 1 10.1567 -9.6092 0.4336 39 1 13.0159 -5.0666 -1.0886 40 1 10.2994 -5.6087 -1.1586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521755357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:55 Heat of formation + Delta-G solvation = 117.528359 kcal Electronic energy + Delta-G solvation = -26669.196139 eV Core-core repulsion = 22646.577253 eV Total energy + Delta-G solvation = -4022.618886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.34157 -42.14447 -41.36863 -39.09594 -36.19461 -35.50721 -35.27310 -34.82155 -32.63875 -31.52541 -31.17554 -30.40779 -27.72249 -27.25231 -26.24831 -24.48712 -23.44209 -23.12064 -22.12764 -21.84929 -20.92359 -19.36186 -19.11675 -19.10397 -18.20805 -17.76003 -17.36438 -16.80945 -16.57721 -16.42023 -16.16332 -15.99298 -15.45902 -15.02410 -14.97395 -14.66188 -14.58622 -14.23276 -13.78164 -13.73893 -13.56558 -13.27685 -13.16182 -12.97522 -12.84659 -12.67958 -12.41316 -11.96153 -11.86806 -11.76824 -11.63092 -11.57110 -11.45727 -11.13806 -10.88427 -10.10572 -9.53760 -9.38594 -8.96198 -8.60278 -6.38673 -0.41553 0.02791 0.86510 1.00145 1.04515 1.06752 1.39392 1.49396 1.54556 1.70565 1.86132 1.96751 1.99347 2.20999 2.63494 2.72569 3.20139 3.57279 3.64928 3.66685 3.90140 4.07777 4.16291 4.42100 4.48844 4.61663 4.62653 4.65205 4.74916 4.77494 4.79247 4.91771 4.97236 5.09371 5.12870 5.30216 5.35982 5.66854 5.74258 5.95885 6.04287 6.04892 6.20472 6.37478 6.43901 6.60591 6.73743 6.85867 6.90631 6.98612 8.31846 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.002086 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.827328 B =13418.107883 C =14401.269205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.361 5.361 3 C 0.077 3.923 4 C -0.260 4.260 5 C 0.111 3.889 6 C 0.055 3.945 7 C -0.149 4.149 8 C -0.034 4.034 9 C 0.593 3.407 10 O -0.533 6.533 11 N -0.644 5.644 12 C 0.144 3.856 13 C -0.240 4.240 14 C -0.081 4.081 15 C -0.242 4.242 16 C 0.092 3.908 17 C -0.494 4.494 18 H 0.080 0.920 19 C 0.035 3.965 20 N -0.823 5.823 21 Si 0.984 3.016 22 H -0.258 1.258 23 H -0.266 1.266 24 H -0.265 1.265 25 C -0.199 4.199 26 N -0.329 5.329 27 O 0.159 5.841 28 N -0.298 5.298 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.232 0.768 33 H 0.174 0.826 34 H 0.191 0.809 35 H 0.416 0.584 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.289 0.711 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.417 20.078 0.716 28.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.145 5.145 3 C -0.069 4.069 4 C -0.289 4.289 5 C -0.051 4.051 6 C -0.010 4.010 7 C -0.174 4.174 8 C -0.191 4.191 9 C 0.379 3.621 10 O -0.408 6.408 11 N -0.288 5.288 12 C 0.051 3.949 13 C -0.261 4.261 14 C -0.099 4.099 15 C -0.261 4.261 16 C 0.089 3.911 17 C -0.523 4.523 18 H 0.098 0.902 19 C -0.180 4.180 20 N -0.448 5.448 21 Si 0.804 3.196 22 H -0.182 1.182 23 H -0.191 1.191 24 H -0.189 1.189 25 C -0.221 4.221 26 N -0.025 5.025 27 O 0.078 5.922 28 N -0.127 5.127 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.248 0.752 33 H 0.192 0.808 34 H 0.208 0.792 35 H 0.253 0.747 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.433 18.870 0.754 27.823 hybrid contribution 0.873 0.291 -0.419 1.011 sum -19.560 19.160 0.335 27.383 Atomic orbital electron populations 1.22385 0.70920 1.06595 1.05200 1.48985 1.08287 1.02851 1.54398 1.23292 0.89603 0.95154 0.98819 1.21905 0.99672 0.91947 1.15385 1.18819 0.88130 0.92867 1.05315 1.20996 0.84482 0.91203 1.04356 1.22684 0.95792 0.94590 1.04321 1.23065 0.93502 0.92948 1.09584 1.17151 0.82043 0.86270 0.76662 1.90784 1.61143 1.39174 1.49741 1.43258 1.06176 1.08866 1.70527 1.17678 0.94562 0.84491 0.98137 1.20485 1.03151 0.94936 1.07517 1.20753 0.95161 0.95485 0.98515 1.21264 0.99703 1.00266 1.04912 1.17776 0.92461 0.91237 0.89611 1.19835 1.02574 0.95602 1.34321 0.90164 1.26770 1.00705 0.93904 0.96621 1.69857 1.35055 1.04784 1.35140 0.85135 0.76912 0.79759 0.77767 1.18165 1.19052 1.18924 1.21023 0.96527 0.99497 1.05017 1.74195 1.16937 0.95538 1.15841 1.84848 1.13036 1.29411 1.64951 1.77617 1.00298 1.09863 1.24885 0.89042 0.89376 0.85302 0.75200 0.80829 0.79174 0.74700 0.87740 0.85651 0.87478 0.90038 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 11.46 127.77 1.46 1.73 16 2 N -0.36 -4.44 4.01 -369.70 -1.48 -5.92 16 3 C 0.08 0.63 11.46 83.45 0.96 1.59 16 4 C -0.26 -3.69 10.77 22.21 0.24 -3.45 16 5 C 0.11 2.39 7.11 42.38 0.30 2.69 16 6 C 0.05 1.39 7.35 24.46 0.18 1.56 16 7 C -0.15 -4.37 10.94 22.82 0.25 -4.12 16 8 C -0.03 -1.18 7.18 42.84 0.31 -0.87 16 9 C 0.59 24.61 7.58 86.92 0.66 25.27 16 10 O -0.53 -24.85 14.69 -3.75 -0.06 -24.91 16 11 N -0.64 -27.97 5.33 -305.85 -1.63 -29.60 16 12 C 0.14 7.25 6.25 38.13 0.24 7.49 16 13 C -0.24 -11.93 8.66 22.59 0.20 -11.74 16 14 C -0.08 -3.84 10.02 22.20 0.22 -3.62 16 15 C -0.24 -12.36 9.79 22.75 0.22 -12.13 16 16 C 0.09 5.13 5.57 -21.31 -0.12 5.01 16 17 C -0.49 -26.92 9.05 23.46 0.21 -26.71 16 18 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 19 C 0.04 1.78 5.16 85.25 0.44 2.21 16 20 N -0.82 -42.83 10.94 21.82 0.24 -42.60 16 21 Si 0.98 38.42 29.59 68.60 2.03 40.45 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 25 C -0.20 -10.84 8.60 22.86 0.20 -10.64 16 26 N -0.33 -10.29 11.82 -49.00 -0.58 -10.87 16 27 O 0.16 4.17 11.20 67.65 0.76 4.93 16 28 N -0.30 -6.42 12.60 -48.37 -0.61 -7.03 16 29 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.13 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.23 -0.56 8.06 -2.91 -0.02 -0.58 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.19 5.28 8.06 -2.91 -0.02 5.26 16 35 H 0.42 16.51 8.58 -92.70 -0.80 15.72 16 36 H 0.10 5.09 6.47 -2.91 -0.02 5.07 16 37 H 0.13 5.06 8.06 -2.91 -0.02 5.03 16 38 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 39 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 40 H 0.11 6.24 6.17 -2.91 -0.02 6.22 16 Total: -1.00 -73.55 360.56 4.96 -68.59 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.32 Total: 32.68 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 5.97 Total: -25.72 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -4.06 Total: -96.02 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.70 Total: -19.98 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -73.55 4.96 -68.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521755357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.117 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds