Wall clock time and date at job start Tue Mar 31 2020 20:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28447 * 125.18703 * 2 1 4 4 C 1.30871 * 110.92280 * 180.28544 * 3 2 1 5 5 C 1.39672 * 107.86279 * 359.71505 * 4 3 2 6 6 C 1.36599 * 125.19462 * 179.79594 * 2 1 3 7 7 C 1.47170 * 126.88010 * 359.97438 * 6 2 1 8 8 O 1.21626 * 120.00118 * 5.44843 * 7 6 2 9 9 N 1.34771 * 119.99672 * 185.45631 * 7 6 2 10 10 C 1.47024 * 125.65271 * 354.81593 * 9 7 6 11 11 C 1.54370 * 107.29058 * 181.13076 * 10 9 7 12 12 C 1.55154 * 102.91945 * 22.14505 * 11 10 9 13 13 H 1.08996 * 111.00850 * 82.63473 * 12 11 10 14 14 N 1.46496 * 111.00394 * 206.44982 * 12 11 10 15 15 C 1.34780 * 120.00464 * 201.81741 * 14 12 11 16 16 O 1.21285 * 119.99237 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00474 * 179.97438 * 15 14 12 18 18 S 1.80997 * 109.47218 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00056 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99729 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00258 * 180.02562 * 19 18 17 22 22 N 1.31639 * 119.99720 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47193 * 89.99529 * 23 21 19 25 25 H 1.48498 * 109.47154 * 209.99692 * 23 21 19 26 26 H 1.48494 * 109.46902 * 329.99840 * 23 21 19 27 27 C 1.47429 * 125.64721 * 174.87136 * 9 7 6 28 28 H 1.09002 * 109.46530 * 274.45709 * 1 2 3 29 29 H 1.08994 * 109.47499 * 34.46135 * 1 2 3 30 30 H 1.09004 * 109.46821 * 154.46147 * 1 2 3 31 31 H 1.07995 * 126.06899 * 179.75490 * 4 3 2 32 32 H 1.07999 * 127.31980 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.88292 * 300.51936 * 10 9 7 34 34 H 1.09009 * 109.87649 * 61.68557 * 10 9 7 35 35 H 1.08995 * 110.70776 * 263.79615 * 11 10 9 36 36 H 1.09004 * 110.75436 * 140.51074 * 11 10 9 37 37 H 0.96999 * 120.00099 * 21.82182 * 14 12 11 38 38 H 1.08998 * 109.46942 * 60.00220 * 17 15 14 39 39 H 1.09000 * 109.47051 * 300.00198 * 17 15 14 40 40 H 0.96999 * 119.99905 * 180.02562 * 22 21 19 41 41 H 1.08996 * 110.36792 * 36.98543 * 27 9 7 42 42 H 1.09004 * 110.36302 * 274.66695 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0498 0.0000 4 6 3.4735 0.7273 -0.0061 5 6 3.5612 -0.6666 -0.0038 6 6 2.2523 -1.1163 0.0040 7 6 1.7994 -2.5165 0.0095 8 8 0.6145 -2.7728 -0.0891 9 7 2.6975 -3.5148 0.1240 10 6 4.1589 -3.3548 0.1425 11 6 4.7736 -4.7659 0.2600 12 6 3.6389 -5.6835 -0.2672 13 1 3.6463 -5.7275 -1.3562 14 7 3.7383 -7.0261 0.3104 15 6 3.1600 -8.0722 -0.3123 16 8 2.5578 -7.9020 -1.3512 17 6 3.2627 -9.4534 0.2816 18 16 2.3919 -10.6328 -0.7799 19 6 2.6646 -12.1192 0.1263 20 1 3.2309 -12.0950 1.0455 21 6 2.1524 -13.3213 -0.3419 22 7 1.4625 -13.3508 -1.4626 23 14 2.4421 -14.8972 0.6183 24 1 1.3391 -15.0927 1.5933 25 1 2.4835 -16.0478 -0.3195 26 1 3.7339 -14.8038 1.3446 27 6 2.3774 -4.9483 0.2502 28 1 -0.3632 0.0799 1.0246 29 1 -0.3634 0.8472 -0.5815 30 1 -0.3633 -0.9273 -0.4431 31 1 4.3048 1.4167 -0.0112 32 1 4.4595 -1.2662 -0.0078 33 1 4.4918 -2.8819 -0.7815 34 1 4.4546 -2.7488 0.9990 35 1 5.0070 -4.9993 1.2988 36 1 5.6622 -4.8535 -0.3651 37 1 4.2201 -7.1623 1.1412 38 1 2.8126 -9.4564 1.2743 39 1 4.3118 -9.7392 0.3574 40 1 1.1042 -14.1908 -1.7896 41 1 1.5130 -5.1996 -0.3644 42 1 2.1898 -5.2047 1.2929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523015283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:55 Heat of formation + Delta-G solvation = 25.991559 kcal Electronic energy + Delta-G solvation = -25842.414851 eV Core-core repulsion = 21951.270583 eV Total energy + Delta-G solvation = -3891.144268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.90743 -40.43547 -39.16601 -37.61519 -34.49366 -33.57423 -32.45330 -31.87817 -30.90862 -29.65216 -27.99913 -27.47159 -25.52596 -24.83726 -22.38467 -22.20800 -21.31691 -20.49865 -19.94512 -18.08234 -17.62181 -17.15678 -16.73339 -16.54549 -16.20350 -15.76574 -15.17085 -15.12167 -14.82576 -14.53873 -14.43132 -14.16998 -13.93770 -13.73373 -13.33997 -13.21543 -13.15747 -13.02005 -12.69852 -12.60501 -12.21789 -12.04092 -11.68623 -11.25382 -11.09398 -11.08548 -11.04860 -10.78596 -10.41953 -9.84957 -9.62444 -9.53513 -9.42006 -9.22937 -9.09011 -8.97417 -8.27510 -6.53444 -6.24182 -3.95269 0.87561 1.90297 2.23920 2.57343 2.80951 2.94420 3.00377 3.20695 3.25937 3.29477 3.61436 3.85348 4.09464 4.17693 4.17899 4.37506 4.52656 4.71523 4.78177 4.81868 4.89904 4.91805 5.06662 5.10231 5.11113 5.16986 5.25782 5.32347 5.34056 5.45531 5.55399 5.67582 5.73762 5.82043 5.84935 6.07984 6.08453 6.31559 6.45993 6.97094 7.54524 7.57395 7.58684 7.72662 8.32510 8.48115 9.21157 10.83184 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.001873 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.840089 B =14942.956970 C =15463.995552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.257 5.257 3 N -0.278 5.278 4 C -0.005 4.005 5 C -0.199 4.199 6 C -0.033 4.033 7 C 0.606 3.394 8 O -0.535 6.535 9 N -0.601 5.601 10 C 0.095 3.905 11 C -0.140 4.140 12 C 0.137 3.863 13 H 0.108 0.892 14 N -0.729 5.729 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.096 3.904 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.402 0.598 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.269 0.731 41 H 0.092 0.908 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.245 26.830 6.499 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.044 5.044 3 N -0.111 5.111 4 C -0.180 4.180 5 C -0.228 4.228 6 C -0.162 4.162 7 C 0.394 3.606 8 O -0.412 6.412 9 N -0.335 5.335 10 C -0.028 4.028 11 C -0.178 4.178 12 C 0.030 3.970 13 H 0.126 0.874 14 N -0.384 5.384 15 C 0.320 3.680 16 O -0.384 6.384 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.028 4.028 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.204 0.796 32 H 0.188 0.812 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.236 0.764 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.533 27.817 4.557 28.725 hybrid contribution 1.693 -1.847 2.289 3.394 sum 7.226 25.970 6.846 27.812 Atomic orbital electron populations 1.22465 0.72324 1.06591 1.04741 1.45655 1.08014 1.01597 1.49160 1.73234 1.04514 1.13635 1.19744 1.23625 0.93479 0.95070 1.05861 1.22771 0.96075 0.95712 1.08260 1.21273 0.91608 0.89390 1.13928 1.16471 0.84779 0.82470 0.76889 1.90807 1.15860 1.83976 1.50600 1.47904 1.06700 1.06823 1.72105 1.22465 0.79709 0.98050 1.02610 1.22999 0.98556 0.93064 1.03219 1.21940 0.93131 0.81889 1.00019 0.87426 1.45885 1.58160 1.06145 1.28167 1.20411 0.77513 0.85789 0.84304 1.90729 1.40059 1.85013 1.22621 1.23531 1.06046 0.95588 1.05257 1.85438 1.68655 0.98457 1.30724 1.22856 1.40611 0.93366 1.11604 0.90891 1.25000 0.94527 0.98873 0.95215 1.70019 1.33171 1.27292 1.19736 0.86160 0.78717 0.81234 0.79339 1.20267 1.20744 1.19697 1.22783 0.99834 0.77837 1.02307 0.89723 0.88790 0.86532 0.79556 0.81216 0.90060 0.90003 0.89525 0.88660 0.76380 0.89077 0.89059 0.92149 0.88986 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 11.00 59.85 0.66 1.29 16 2 N -0.26 -2.66 3.75 -63.88 -0.24 -2.90 16 3 N -0.28 -2.86 11.90 30.59 0.36 -2.50 16 4 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 5 C -0.20 -1.53 9.44 -38.99 -0.37 -1.90 16 6 C -0.03 -0.35 6.92 -82.06 -0.57 -0.91 16 7 C 0.61 7.18 7.82 -12.64 -0.10 7.08 16 8 O -0.54 -7.93 14.82 5.25 0.08 -7.85 16 9 N -0.60 -5.87 3.33 -171.84 -0.57 -6.44 16 10 C 0.09 0.54 5.00 -3.04 -0.02 0.53 16 11 C -0.14 -0.76 6.59 -24.87 -0.16 -0.92 16 12 C 0.14 1.35 3.37 -65.79 -0.22 1.13 16 13 H 0.11 1.28 7.63 -51.93 -0.40 0.89 16 14 N -0.73 -8.20 5.21 -51.73 -0.27 -8.47 16 15 C 0.53 9.12 7.85 -10.99 -0.09 9.04 16 16 O -0.51 -10.95 15.55 5.55 0.09 -10.87 16 17 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 23 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.10 1.06 6.63 -2.53 -0.02 1.04 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.12 1.07 5.98 -51.93 -0.31 0.76 16 31 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.17 0.78 4.66 -52.49 -0.24 0.54 16 33 H 0.08 0.38 7.01 -51.93 -0.36 0.02 16 34 H 0.08 0.34 6.91 -51.92 -0.36 -0.02 16 35 H 0.09 0.35 8.00 -51.93 -0.42 -0.06 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.40 3.22 8.54 -40.82 -0.35 2.87 16 38 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 1.30 7.99 -51.93 -0.41 0.89 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -37.66 366.77 -7.55 -45.22 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.36 Total: 0.40 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.67 Total: 0.72 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.02 Total: -45.46 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.16 Total: -18.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.66 -7.55 -45.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523015283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.210 kcal (2) G-P(sol) polarization free energy of solvation -37.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds