Wall clock time and date at job start Tue Mar 31 2020 20:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28447 * 125.18703 * 2 1 4 4 C 1.30871 * 110.92280 * 180.28544 * 3 2 1 5 5 C 1.39672 * 107.86279 * 359.71505 * 4 3 2 6 6 C 1.36599 * 125.19462 * 179.79594 * 2 1 3 7 7 C 1.47170 * 126.88010 * 359.97438 * 6 2 1 8 8 O 1.21626 * 120.00118 * 5.44843 * 7 6 2 9 9 N 1.34771 * 119.99672 * 185.45631 * 7 6 2 10 10 C 1.47024 * 125.65271 * 354.81593 * 9 7 6 11 11 C 1.54370 * 107.29058 * 181.13076 * 10 9 7 12 12 C 1.55154 * 102.91945 * 22.14505 * 11 10 9 13 13 H 1.08996 * 111.00850 * 82.63473 * 12 11 10 14 14 N 1.46496 * 111.00394 * 206.44982 * 12 11 10 15 15 C 1.34780 * 120.00464 * 201.81741 * 14 12 11 16 16 O 1.21285 * 119.99237 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00474 * 179.97438 * 15 14 12 18 18 S 1.80997 * 109.47218 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00056 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99729 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00258 * 180.02562 * 19 18 17 22 22 N 1.31639 * 119.99720 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47193 * 89.99529 * 23 21 19 25 25 H 1.48498 * 109.47154 * 209.99692 * 23 21 19 26 26 H 1.48494 * 109.46902 * 329.99840 * 23 21 19 27 27 C 1.47429 * 125.64721 * 174.87136 * 9 7 6 28 28 H 1.09002 * 109.46530 * 274.45709 * 1 2 3 29 29 H 1.08994 * 109.47499 * 34.46135 * 1 2 3 30 30 H 1.09004 * 109.46821 * 154.46147 * 1 2 3 31 31 H 1.07995 * 126.06899 * 179.75490 * 4 3 2 32 32 H 1.07999 * 127.31980 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.88292 * 300.51936 * 10 9 7 34 34 H 1.09009 * 109.87649 * 61.68557 * 10 9 7 35 35 H 1.08995 * 110.70776 * 263.79615 * 11 10 9 36 36 H 1.09004 * 110.75436 * 140.51074 * 11 10 9 37 37 H 0.96999 * 120.00099 * 21.82182 * 14 12 11 38 38 H 1.08998 * 109.46942 * 60.00220 * 17 15 14 39 39 H 1.09000 * 109.47051 * 300.00198 * 17 15 14 40 40 H 0.96999 * 119.99905 * 180.02562 * 22 21 19 41 41 H 1.08996 * 110.36792 * 36.98543 * 27 9 7 42 42 H 1.09004 * 110.36302 * 274.66695 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0498 0.0000 4 6 3.4735 0.7273 -0.0061 5 6 3.5612 -0.6666 -0.0038 6 6 2.2523 -1.1163 0.0040 7 6 1.7994 -2.5165 0.0095 8 8 0.6145 -2.7728 -0.0891 9 7 2.6975 -3.5148 0.1240 10 6 4.1589 -3.3548 0.1425 11 6 4.7736 -4.7659 0.2600 12 6 3.6389 -5.6835 -0.2672 13 1 3.6463 -5.7275 -1.3562 14 7 3.7383 -7.0261 0.3104 15 6 3.1600 -8.0722 -0.3123 16 8 2.5578 -7.9020 -1.3512 17 6 3.2627 -9.4534 0.2816 18 16 2.3919 -10.6328 -0.7799 19 6 2.6646 -12.1192 0.1263 20 1 3.2309 -12.0950 1.0455 21 6 2.1524 -13.3213 -0.3419 22 7 1.4625 -13.3508 -1.4626 23 14 2.4421 -14.8972 0.6183 24 1 1.3391 -15.0927 1.5933 25 1 2.4835 -16.0478 -0.3195 26 1 3.7339 -14.8038 1.3446 27 6 2.3774 -4.9483 0.2502 28 1 -0.3632 0.0799 1.0246 29 1 -0.3634 0.8472 -0.5815 30 1 -0.3633 -0.9273 -0.4431 31 1 4.3048 1.4167 -0.0112 32 1 4.4595 -1.2662 -0.0078 33 1 4.4918 -2.8819 -0.7815 34 1 4.4546 -2.7488 0.9990 35 1 5.0070 -4.9993 1.2988 36 1 5.6622 -4.8535 -0.3651 37 1 4.2201 -7.1623 1.1412 38 1 2.8126 -9.4564 1.2743 39 1 4.3118 -9.7392 0.3574 40 1 1.1042 -14.1908 -1.7896 41 1 1.5130 -5.1996 -0.3644 42 1 2.1898 -5.2047 1.2929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523015283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:54 Heat of formation + Delta-G solvation = -3.034474 kcal Electronic energy + Delta-G solvation = -25843.673514 eV Core-core repulsion = 21951.270583 eV Total energy + Delta-G solvation = -3892.402932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.57057 -41.33244 -40.35570 -38.56403 -35.54422 -34.57417 -34.26232 -32.78346 -31.67279 -30.76166 -29.01635 -28.10070 -27.64294 -25.62338 -23.12004 -22.86208 -22.16180 -21.66995 -20.65772 -19.85241 -18.59014 -18.10918 -17.62101 -17.48907 -17.17012 -16.87040 -16.69107 -16.33544 -16.23055 -15.67051 -15.38586 -15.02557 -14.76675 -14.69756 -14.48025 -14.37522 -14.01784 -13.95482 -13.75854 -13.48222 -13.34037 -13.15622 -12.89063 -12.70300 -12.61798 -12.51969 -11.88602 -11.75685 -11.68392 -11.31672 -11.13615 -10.98500 -10.36974 -10.26964 -10.25321 -10.04238 -9.79978 -8.65737 -8.33900 -6.11803 0.14068 1.16132 1.29827 1.43134 1.48269 1.57711 1.58346 1.62754 1.89949 2.03168 2.27630 2.34339 3.00434 3.16733 3.31723 3.47471 3.58878 3.63016 3.97736 3.99229 4.12529 4.15506 4.23073 4.24435 4.34014 4.34701 4.52476 4.54068 4.57807 4.65380 4.69309 4.77195 4.82236 4.95056 5.08378 5.12373 5.42953 5.45746 5.51988 5.68695 6.20402 6.20717 6.49555 6.78801 7.03982 7.07607 7.23906 8.75183 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.001873 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.840089 B =14942.956970 C =15463.995552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.272 5.272 3 N -0.302 5.302 4 C -0.004 4.004 5 C -0.179 4.179 6 C -0.060 4.060 7 C 0.598 3.402 8 O -0.581 6.581 9 N -0.598 5.598 10 C 0.086 3.914 11 C -0.121 4.121 12 C 0.135 3.865 13 H 0.084 0.916 14 N -0.698 5.698 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.129 4.129 18 S -0.157 6.157 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.256 1.256 27 C 0.098 3.902 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.222 0.778 32 H 0.205 0.795 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.423 0.577 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.270 0.730 41 H 0.047 0.953 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.952 27.977 8.976 31.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.060 5.060 3 N -0.135 5.135 4 C -0.180 4.180 5 C -0.208 4.208 6 C -0.187 4.187 7 C 0.387 3.613 8 O -0.462 6.462 9 N -0.331 5.331 10 C -0.035 4.035 11 C -0.159 4.159 12 C 0.028 3.972 13 H 0.102 0.898 14 N -0.353 5.353 15 C 0.322 3.678 16 O -0.441 6.441 17 C -0.280 4.280 18 S 0.070 5.930 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.179 1.179 27 C -0.027 4.027 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.239 0.761 32 H 0.222 0.778 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.262 0.738 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.313 29.002 7.086 31.274 hybrid contribution 0.599 -2.048 1.538 2.630 sum 9.913 26.955 8.625 29.987 Atomic orbital electron populations 1.22474 0.72082 1.06270 1.05382 1.45835 1.08527 1.01727 1.49943 1.73225 1.05758 1.13978 1.20541 1.24311 0.93478 0.95891 1.04294 1.23211 0.95867 0.95900 1.05815 1.21307 0.92932 0.88538 1.15965 1.16833 0.84487 0.83548 0.76446 1.90780 1.17872 1.84735 1.52848 1.47950 1.08476 1.05632 1.71017 1.22858 0.76814 0.99001 1.04829 1.23037 0.97073 0.90763 1.05002 1.21996 0.94922 0.81365 0.98912 0.89777 1.45528 1.56198 1.05409 1.28170 1.20144 0.77523 0.86349 0.83806 1.90725 1.42681 1.85653 1.25046 1.23368 1.06179 0.94431 1.04014 1.85655 1.71086 1.01629 1.34631 1.23206 1.40493 0.93650 1.11803 0.89681 1.26147 0.94023 1.02973 0.96210 1.70194 1.34579 1.28295 1.21811 0.84947 0.79306 0.75976 0.77718 1.19489 1.20460 1.17947 1.22617 0.98978 0.79317 1.01760 0.88944 0.87231 0.88352 0.76141 0.77849 0.88363 0.87061 0.86890 0.86297 0.73831 0.87053 0.86628 0.92079 0.93438 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 11.00 127.77 1.41 2.73 16 2 N -0.27 -5.58 3.75 -356.01 -1.33 -6.92 16 3 N -0.30 -5.79 11.90 -57.14 -0.68 -6.47 16 4 C 0.00 -0.06 12.03 85.18 1.02 0.97 16 5 C -0.18 -2.17 9.44 22.66 0.21 -1.95 16 6 C -0.06 -1.18 6.92 40.79 0.28 -0.89 16 7 C 0.60 14.39 7.82 86.59 0.68 15.06 16 8 O -0.58 -18.61 14.82 -4.11 -0.06 -18.67 16 9 N -0.60 -11.05 3.33 -815.84 -2.71 -13.76 16 10 C 0.09 0.64 5.00 86.74 0.43 1.08 16 11 C -0.12 -0.76 6.59 31.80 0.21 -0.55 16 12 C 0.13 2.44 3.37 46.38 0.16 2.60 16 13 H 0.08 2.00 7.63 -2.39 -0.02 1.98 16 14 N -0.70 -14.23 5.21 -435.97 -2.27 -16.51 16 15 C 0.54 18.14 7.85 87.66 0.69 18.82 16 16 O -0.56 -25.15 15.55 -3.04 -0.05 -25.20 16 17 C -0.13 -4.75 6.16 71.24 0.44 -4.32 16 18 S -0.16 -8.57 20.57 -56.49 -1.16 -9.73 16 19 C -0.54 -30.49 9.50 67.95 0.65 -29.85 16 20 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.62 5.49 84.85 0.47 1.09 16 22 N -0.91 -55.93 13.22 21.65 0.29 -55.65 16 23 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 27 C 0.10 2.16 6.63 86.85 0.58 2.74 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 2.04 5.98 -2.38 -0.01 2.03 16 31 H 0.22 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.20 0.80 4.66 -2.91 -0.01 0.79 16 33 H 0.10 0.47 7.01 -2.39 -0.02 0.45 16 34 H 0.11 0.28 6.91 -2.38 -0.02 0.27 16 35 H 0.11 0.22 8.00 -2.39 -0.02 0.20 16 36 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 37 H 0.42 5.12 8.54 -92.71 -0.79 4.33 16 38 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 39 H 0.12 3.72 8.14 -2.40 -0.02 3.70 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.05 1.48 7.99 -2.39 -0.02 1.46 16 42 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -89.39 366.77 1.54 -87.86 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.28 Total: 12.37 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 7.22 Total: 7.53 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -6.72 Total: -99.30 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.11 Total: -43.87 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -89.39 1.54 -87.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523015283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.823 kcal (2) G-P(sol) polarization free energy of solvation -89.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds