Wall clock time and date at job start Tue Mar 31 2020 20:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28442 * 125.19588 * 2 1 4 4 C 1.30863 * 110.92958 * 179.97438 * 3 2 1 5 5 C 1.39675 * 107.86086 * 359.77755 * 4 3 2 6 6 C 1.36609 * 125.18660 * 179.97438 * 2 1 3 7 7 C 1.47156 * 126.88271 * 359.97438 * 6 2 1 8 8 O 1.21625 * 120.00233 * 4.88158 * 7 6 2 9 9 N 1.34782 * 119.99514 * 184.88835 * 7 6 2 10 10 C 1.46502 * 119.99793 * 174.33779 * 9 7 6 11 11 H 1.09005 * 110.63828 * 31.86097 * 10 9 7 12 12 C 1.55155 * 110.72024 * 154.99664 * 10 9 7 13 13 C 1.54904 * 101.58329 * 153.86686 * 12 10 9 14 14 N 1.47423 * 104.83302 * 322.99365 * 13 12 10 15 15 C 1.34773 * 125.65060 * 204.09343 * 14 13 12 16 16 O 1.21284 * 120.00278 * 180.02562 * 15 14 13 17 17 C 1.50699 * 120.00044 * 0.02562 * 15 14 13 18 18 S 1.80998 * 109.47195 * 180.02562 * 17 15 14 19 19 C 1.76209 * 99.99961 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99663 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99671 * 179.72602 * 19 18 17 22 22 N 1.31633 * 119.99587 * 180.27372 * 21 19 18 23 23 Si 1.86800 * 120.00433 * 0.27410 * 21 19 18 24 24 H 1.48498 * 109.47145 * 89.99685 * 23 21 19 25 25 H 1.48502 * 109.46882 * 210.00310 * 23 21 19 26 26 H 1.48507 * 109.46967 * 329.99905 * 23 21 19 27 27 C 1.47027 * 108.70434 * 24.35372 * 14 13 12 28 28 H 1.09003 * 109.46671 * 264.34563 * 1 2 3 29 29 H 1.09001 * 109.47110 * 24.33864 * 1 2 3 30 30 H 1.08996 * 109.47105 * 144.34276 * 1 2 3 31 31 H 1.07999 * 126.06496 * 179.97438 * 4 3 2 32 32 H 1.07999 * 127.31781 * 180.23574 * 5 4 3 33 33 H 0.96992 * 120.00136 * 354.34024 * 9 7 6 34 34 H 1.09002 * 111.00548 * 35.79413 * 12 10 9 35 35 H 1.09004 * 111.04134 * 271.95631 * 12 10 9 36 36 H 1.08997 * 110.37030 * 204.15211 * 13 12 10 37 37 H 1.09002 * 110.36674 * 81.82979 * 13 12 10 38 38 H 1.09004 * 109.46855 * 60.00718 * 17 15 14 39 39 H 1.08999 * 109.47596 * 300.00387 * 17 15 14 40 40 H 0.96999 * 119.99888 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.88340 * 118.12900 * 27 14 13 42 42 H 1.08992 * 109.88153 * 239.30010 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4736 0.7271 0.0005 5 6 3.5611 -0.6669 0.0061 6 6 2.2522 -1.1165 0.0005 7 6 1.7991 -2.5166 0.0017 8 8 0.6134 -2.7722 -0.0874 9 7 2.6983 -3.5156 0.1015 10 6 2.2418 -4.9020 0.2276 11 1 1.3028 -5.0474 -0.3064 12 6 3.3249 -5.8857 -0.2887 13 6 2.9925 -7.1657 0.5180 14 7 2.5803 -6.6780 1.8467 15 6 2.6369 -7.3824 2.9943 16 8 2.2690 -6.8782 4.0342 17 6 3.1574 -8.7967 2.9855 18 16 3.1075 -9.4684 4.6654 19 6 3.7525 -11.0813 4.3693 20 1 4.0362 -11.3741 3.3692 21 6 3.9005 -11.9735 5.4221 22 7 4.3874 -13.1765 5.2017 23 14 3.4091 -11.4673 7.1517 24 1 1.9842 -11.8155 7.3833 25 1 4.2598 -12.1817 8.1371 26 1 3.5926 -10.0021 7.3096 27 6 2.0915 -5.2980 1.7117 28 1 -0.3633 -0.1013 1.0227 29 1 -0.3633 0.9363 -0.4235 30 1 -0.3633 -0.8350 -0.5990 31 1 4.3049 1.4165 0.0003 32 1 4.4594 -1.2664 0.0115 33 1 3.6475 -3.3168 0.0899 34 1 4.3257 -5.5240 -0.0525 35 1 3.2172 -6.0596 -1.3593 36 1 3.8747 -7.8000 0.6035 37 1 2.1764 -7.7114 0.0443 38 1 4.1849 -8.8034 2.6215 39 1 2.5362 -9.4084 2.3313 40 1 4.4912 -13.8000 5.9375 41 1 1.0436 -5.2453 2.0071 42 1 2.6881 -4.6308 2.3337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524130868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:32 Heat of formation + Delta-G solvation = 19.103522 kcal Electronic energy + Delta-G solvation = -25797.430041 eV Core-core repulsion = 21905.987085 eV Total energy + Delta-G solvation = -3891.442956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.95786 -40.48175 -39.37008 -37.42177 -34.85808 -33.63185 -32.46037 -31.91376 -30.67968 -29.87510 -28.04706 -27.48643 -25.64184 -24.34592 -23.25202 -22.19103 -21.26577 -20.54002 -19.50845 -18.56689 -17.71803 -17.25125 -16.75081 -16.69963 -16.29680 -15.73036 -15.30383 -15.05416 -14.88909 -14.79437 -14.29273 -14.18189 -13.95210 -13.83895 -13.62231 -13.23082 -13.03298 -12.85241 -12.79964 -12.63897 -12.31993 -12.06932 -11.96147 -11.31765 -11.28600 -11.23997 -11.02417 -10.65254 -10.57531 -9.90205 -9.82803 -9.63801 -9.51579 -9.46338 -9.02365 -8.68569 -8.52247 -6.94856 -6.30965 -4.03112 0.77260 1.87448 2.16863 2.49012 2.72229 2.77229 2.89417 3.18347 3.32120 3.49304 3.56969 3.92418 4.10327 4.13946 4.17597 4.31571 4.59157 4.64065 4.67985 4.75810 4.81565 4.83733 4.96970 5.08117 5.08988 5.14287 5.16374 5.24353 5.33211 5.38667 5.48168 5.58294 5.64610 5.76056 5.91788 5.96492 6.01606 6.22630 6.24041 6.84873 7.46959 7.52408 7.63878 7.92016 8.36865 8.39211 9.15190 10.78120 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026726 B = 0.001967 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.405406 B =14234.632774 C =14547.075511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.256 5.256 3 N -0.277 5.277 4 C -0.003 4.003 5 C -0.187 4.187 6 C -0.041 4.041 7 C 0.596 3.404 8 O -0.535 6.535 9 N -0.705 5.705 10 C 0.135 3.865 11 H 0.113 0.887 12 C -0.138 4.138 13 C 0.101 3.899 14 N -0.624 5.624 15 C 0.547 3.453 16 O -0.515 6.515 17 C -0.117 4.117 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.099 3.901 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.188 0.812 32 H 0.162 0.838 33 H 0.407 0.593 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 24.932 -17.199 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.043 5.043 3 N -0.110 5.110 4 C -0.178 4.178 5 C -0.216 4.216 6 C -0.170 4.170 7 C 0.382 3.618 8 O -0.411 6.411 9 N -0.356 5.356 10 C 0.030 3.970 11 H 0.131 0.869 12 C -0.177 4.177 13 C -0.023 4.023 14 N -0.363 5.363 15 C 0.336 3.664 16 O -0.389 6.389 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.026 4.026 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.205 0.795 32 H 0.180 0.820 33 H 0.243 0.757 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.998 26.172 -15.539 30.699 hybrid contribution 1.373 -1.213 -0.435 1.883 sum -2.625 24.960 -15.973 29.749 Atomic orbital electron populations 1.22379 0.72271 1.05781 1.05163 1.45664 1.08043 1.01643 1.48984 1.73257 1.04491 1.13587 1.19642 1.23611 0.93491 0.95012 1.05699 1.22281 0.95497 0.95756 1.08042 1.21339 0.91610 0.89560 1.14492 1.16913 0.85689 0.83150 0.76084 1.90818 1.16157 1.84432 1.49724 1.45553 1.09910 1.05762 1.74415 1.22056 0.99710 0.79510 0.95735 0.86913 1.23100 0.98963 0.94632 1.00966 1.22319 1.01102 0.96241 0.82613 1.48391 1.65943 1.14188 1.07728 1.20031 0.77602 0.87161 0.81648 1.90720 1.47112 1.70740 1.30322 1.23254 1.04274 0.94114 1.05138 1.84835 1.85436 1.15977 1.05351 1.22296 1.48992 0.96342 0.99221 0.89348 1.24711 0.93474 0.93966 0.99155 1.69937 1.43165 1.05537 1.32964 0.86738 0.79556 0.81682 0.83901 1.19190 1.19919 1.15922 1.22238 1.00700 0.83889 0.95748 0.89510 0.88596 0.87276 0.79479 0.82048 0.75712 0.89633 0.88726 0.89414 0.90605 0.88459 0.88453 0.91923 0.90780 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.71 59.85 0.64 1.21 16 2 N -0.26 -2.36 3.75 -63.88 -0.24 -2.60 16 3 N -0.28 -2.64 11.90 30.59 0.36 -2.28 16 4 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 5 C -0.19 -1.25 10.50 -38.98 -0.41 -1.66 16 6 C -0.04 -0.36 6.96 -82.06 -0.57 -0.93 16 7 C 0.60 5.47 7.79 -12.64 -0.10 5.37 16 8 O -0.53 -6.31 14.41 5.26 0.08 -6.23 16 9 N -0.70 -4.77 5.10 -53.18 -0.27 -5.04 16 10 C 0.14 1.04 3.35 -66.09 -0.22 0.82 16 11 H 0.11 0.95 7.48 -51.93 -0.39 0.56 16 12 C -0.14 -0.79 6.72 -24.59 -0.17 -0.95 16 13 C 0.10 0.87 6.69 -2.53 -0.02 0.85 16 14 N -0.62 -8.12 3.33 -170.52 -0.57 -8.69 16 15 C 0.55 9.87 7.87 -10.99 -0.09 9.78 16 16 O -0.51 -11.38 16.19 5.55 0.09 -11.29 16 17 C -0.12 -2.24 5.16 36.01 0.19 -2.06 16 18 S -0.14 -3.59 18.54 -107.50 -1.99 -5.59 16 19 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 23 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.96 6.73 56.52 0.38 -5.58 16 27 C 0.10 1.12 6.63 -3.06 -0.02 1.10 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.11 0.78 6.55 -51.93 -0.34 0.44 16 31 H 0.19 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.16 0.55 7.58 -52.49 -0.40 0.15 16 33 H 0.41 1.72 7.59 -40.82 -0.31 1.41 16 34 H 0.09 0.41 8.01 -51.93 -0.42 -0.01 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.70 7.85 -51.91 -0.41 1.30 16 39 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.86 8.03 -51.93 -0.42 0.45 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -37.59 369.64 -7.27 -44.86 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.60 Total: -1.65 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.76 Total: 1.47 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.06 Total: -44.12 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.17 Total: -17.52 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.59 -7.27 -44.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524130868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.966 kcal (2) G-P(sol) polarization free energy of solvation -37.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds