Wall clock time and date at job start Tue Mar 31 2020 20:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28447 * 125.19128 * 2 1 4 4 C 1.30860 * 110.93138 * 179.97438 * 3 2 1 5 5 C 1.39672 * 107.86195 * 359.77799 * 4 3 2 6 6 C 1.36596 * 125.19676 * 179.97438 * 2 1 3 7 7 C 1.47165 * 126.88131 * 359.97438 * 6 2 1 8 8 O 1.21635 * 119.99956 * 4.88488 * 7 6 2 9 9 N 1.34774 * 120.00594 * 184.88508 * 7 6 2 10 10 C 1.46494 * 120.00561 * 174.27601 * 9 7 6 11 11 H 1.08999 * 112.85129 * 23.80889 * 10 9 7 12 12 C 1.53790 * 113.61524 * 154.99874 * 10 9 7 13 13 C 1.53781 * 87.07667 * 89.11711 * 12 10 9 14 14 H 1.08992 * 113.61720 * 270.79639 * 13 12 10 15 15 N 1.46510 * 113.61111 * 139.98236 * 13 12 10 16 16 C 1.34770 * 120.00176 * 154.99923 * 15 13 12 17 17 O 1.21285 * 119.99874 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00139 * 180.02562 * 16 15 13 19 19 S 1.80996 * 109.47190 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00045 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99951 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99866 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00372 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99745 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47011 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.46732 * 239.99990 * 24 22 20 27 27 H 1.48495 * 109.47120 * 120.00295 * 24 22 20 28 28 C 1.53778 * 87.08305 * 25.43563 * 13 12 10 29 29 H 1.08998 * 109.46966 * 264.29997 * 1 2 3 30 30 H 1.08990 * 109.47252 * 24.29896 * 1 2 3 31 31 H 1.09001 * 109.46675 * 144.30305 * 1 2 3 32 32 H 1.08000 * 126.07146 * 179.97438 * 4 3 2 33 33 H 1.07994 * 127.32251 * 180.23444 * 5 4 3 34 34 H 0.97011 * 119.99525 * 354.27824 * 9 7 6 35 35 H 1.08999 * 113.61378 * 334.56984 * 12 10 9 36 36 H 1.09001 * 113.61364 * 203.66769 * 12 10 9 37 37 H 0.97006 * 119.99315 * 334.99850 * 15 13 12 38 38 H 1.08990 * 109.47263 * 59.99900 * 18 16 15 39 39 H 1.09003 * 109.46622 * 299.99791 * 18 16 15 40 40 H 0.97004 * 120.00039 * 0.02562 * 23 22 20 41 41 H 1.09005 * 113.61810 * 89.11136 * 28 13 12 42 42 H 1.09004 * 113.61171 * 220.01930 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7274 0.0005 5 6 3.5612 -0.6666 0.0061 6 6 2.2523 -1.1162 0.0005 7 6 1.7994 -2.5165 0.0017 8 8 0.6136 -2.7722 -0.0874 9 7 2.6985 -3.5155 0.1014 10 6 2.2422 -4.9017 0.2289 11 1 1.2397 -5.0558 -0.1703 12 6 3.2676 -5.9358 -0.2654 13 6 3.8381 -5.9361 1.1627 14 1 4.6149 -5.1886 1.3227 15 7 4.2218 -7.2667 1.6409 16 6 5.1595 -7.3933 2.6007 17 8 5.6859 -6.4057 3.0682 18 6 5.5546 -8.7620 3.0922 19 16 6.8248 -8.6002 4.3714 20 6 7.0922 -10.2993 4.7539 21 1 6.5323 -11.0639 4.2359 22 6 8.0223 -10.6550 5.7208 23 7 8.7050 -9.7231 6.3517 24 14 8.3052 -12.4563 6.1267 25 1 7.4188 -13.2987 5.2842 26 1 7.9980 -12.6948 7.5599 27 1 9.7231 -12.8072 5.8593 28 6 2.4443 -5.4901 1.6352 29 1 -0.3633 -0.1021 1.0226 30 1 -0.3633 0.9365 -0.4228 31 1 -0.3633 -0.8346 -0.5997 32 1 4.3048 1.4168 0.0003 33 1 4.4595 -1.2661 0.0115 34 1 3.6479 -3.3166 0.0888 35 1 3.9585 -5.5433 -1.0115 36 1 2.8224 -6.8867 -0.5581 37 1 3.8010 -8.0566 1.2667 38 1 5.9480 -9.3470 2.2610 39 1 4.6816 -9.2643 3.5090 40 1 8.5578 -8.7877 6.1412 41 1 1.7741 -6.3192 1.8622 42 1 2.4707 -4.7377 2.4236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524877490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:05 Heat of formation + Delta-G solvation = -3.648232 kcal Electronic energy + Delta-G solvation = -25401.858558 eV Core-core repulsion = 21509.429012 eV Total energy + Delta-G solvation = -3892.429546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.55954 -41.53066 -40.42137 -39.01717 -35.46669 -34.74333 -34.37872 -33.70648 -31.78973 -30.69088 -28.08427 -27.11731 -26.77453 -25.85751 -24.14044 -22.66594 -21.96132 -21.17422 -20.75823 -20.33359 -19.12222 -17.98482 -17.93059 -17.35416 -17.19424 -16.72038 -16.49931 -16.39092 -15.87251 -15.74549 -15.69298 -15.09221 -14.78460 -14.68650 -14.49759 -14.44443 -14.02230 -13.99713 -13.77537 -13.54871 -13.39194 -13.32590 -13.11511 -12.75643 -11.96990 -11.92442 -11.91175 -11.70968 -11.50614 -11.29787 -11.11167 -10.99488 -10.45562 -10.31013 -10.18038 -10.07246 -9.99756 -8.91967 -8.85514 -6.26799 0.13080 1.22933 1.31998 1.52441 1.52717 1.58310 1.62474 1.78741 2.03258 2.10739 2.23846 2.35419 3.02995 3.14703 3.35393 3.41890 3.53539 3.58640 3.83902 3.89148 4.01501 4.09307 4.20351 4.25270 4.33548 4.40381 4.51215 4.56689 4.61929 4.71352 4.75696 4.79056 4.84724 4.96989 4.98737 5.32986 5.48624 5.56221 5.65854 5.66760 6.15931 6.27011 6.47962 6.90821 7.01798 7.06772 7.19927 8.51697 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026375 B = 0.001777 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.371229 B =15753.526541 C =16419.318245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.269 5.269 3 N -0.302 5.302 4 C -0.008 4.008 5 C -0.179 4.179 6 C -0.063 4.063 7 C 0.598 3.402 8 O -0.566 6.566 9 N -0.687 5.687 10 C 0.128 3.872 11 H 0.114 0.886 12 C -0.127 4.127 13 C 0.113 3.887 14 H 0.098 0.902 15 N -0.699 5.699 16 C 0.534 3.466 17 O -0.565 6.565 18 C -0.112 4.112 19 S -0.198 6.198 20 C -0.613 4.613 21 H 0.075 0.925 22 C -0.020 4.020 23 N -0.914 5.914 24 Si 1.141 2.859 25 H -0.262 1.262 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.215 0.785 33 H 0.189 0.811 34 H 0.416 0.584 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.419 0.581 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.261 0.739 41 H 0.108 0.892 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.906 13.518 -19.876 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.057 5.057 3 N -0.135 5.135 4 C -0.183 4.183 5 C -0.208 4.208 6 C -0.192 4.192 7 C 0.384 3.616 8 O -0.446 6.446 9 N -0.338 5.338 10 C 0.023 3.977 11 H 0.132 0.868 12 C -0.165 4.165 13 C 0.008 3.992 14 H 0.116 0.884 15 N -0.352 5.352 16 C 0.320 3.680 17 O -0.444 6.444 18 C -0.263 4.263 19 S 0.029 5.971 20 C -0.760 4.760 21 H 0.093 0.907 22 C -0.223 4.223 23 N -0.550 5.550 24 Si 0.959 3.041 25 H -0.187 1.187 26 H -0.201 1.201 27 H -0.200 1.200 28 C -0.204 4.204 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.232 0.768 33 H 0.206 0.794 34 H 0.253 0.747 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.257 0.743 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.127 0.873 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.927 14.886 -18.229 28.990 hybrid contribution -0.527 -0.682 -1.130 1.421 sum -17.454 14.204 -19.359 29.684 Atomic orbital electron populations 1.22453 0.71595 1.06379 1.05295 1.45885 1.08694 1.01647 1.49453 1.73226 1.05477 1.14172 1.20624 1.24186 0.93601 0.95866 1.04669 1.22710 0.95852 0.95964 1.06293 1.21535 0.92455 0.89533 1.15657 1.16962 0.85444 0.83516 0.75655 1.90774 1.17296 1.84869 1.51642 1.45290 1.10141 1.05461 1.72956 1.21696 1.00207 0.79496 0.96340 0.86820 1.23699 0.97393 1.00437 0.94975 1.22746 0.95830 0.84836 0.95803 0.88442 1.45697 1.40277 1.10142 1.39048 1.20021 0.79009 0.89672 0.79331 1.90691 1.55054 1.40573 1.58038 1.23251 1.02601 0.98302 1.02148 1.85057 1.50447 1.13065 1.48514 1.24090 1.30823 0.91371 1.29739 0.90663 1.27818 0.91547 1.10953 0.92006 1.70862 1.40597 1.02043 1.41485 0.82652 0.77208 0.67294 0.76911 1.18653 1.20138 1.20010 1.24002 0.97470 1.01414 0.97468 0.89318 0.87038 0.87852 0.76830 0.79397 0.74663 0.88423 0.85372 0.74297 0.86882 0.87144 0.92782 0.87343 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.71 127.77 1.37 2.51 16 2 N -0.27 -5.13 3.75 -356.04 -1.33 -6.46 16 3 N -0.30 -5.94 11.90 -57.14 -0.68 -6.62 16 4 C -0.01 -0.13 12.03 85.18 1.02 0.90 16 5 C -0.18 -2.53 10.50 22.66 0.24 -2.30 16 6 C -0.06 -1.16 6.96 40.79 0.28 -0.87 16 7 C 0.60 11.11 7.79 86.59 0.67 11.78 16 8 O -0.57 -13.25 14.38 -4.14 -0.06 -13.31 16 9 N -0.69 -9.26 5.25 -443.55 -2.33 -11.59 16 10 C 0.13 1.61 4.36 45.52 0.20 1.81 16 11 H 0.11 1.53 7.41 -2.39 -0.02 1.51 16 12 C -0.13 -1.13 7.58 31.12 0.24 -0.89 16 13 C 0.11 1.93 4.12 45.52 0.19 2.11 16 14 H 0.10 2.08 7.46 -2.39 -0.02 2.06 16 15 N -0.70 -14.42 5.35 -440.04 -2.36 -16.78 16 16 C 0.53 17.93 7.85 87.66 0.69 18.62 16 17 O -0.57 -24.38 15.46 -3.04 -0.05 -24.42 16 18 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 19 S -0.20 -10.63 19.60 -56.49 -1.11 -11.74 16 20 C -0.61 -34.79 9.50 67.95 0.65 -34.15 16 21 H 0.08 4.01 7.80 -2.91 -0.02 3.98 16 22 C -0.02 -1.16 5.49 84.86 0.47 -0.69 16 23 N -0.91 -57.64 13.67 21.65 0.30 -57.34 16 24 Si 1.14 48.86 29.92 68.60 2.05 50.91 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 26 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 C -0.16 -2.64 7.68 31.12 0.24 -2.40 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.53 6.55 -2.39 -0.02 1.51 16 32 H 0.22 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.19 1.44 7.58 -2.91 -0.02 1.42 16 34 H 0.42 4.03 7.73 -92.70 -0.72 3.31 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.13 0.61 8.12 -2.39 -0.02 0.59 16 37 H 0.42 5.59 8.73 -92.70 -0.81 4.78 16 38 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.26 17.11 7.13 -92.70 -0.66 16.45 16 41 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -85.73 374.88 0.78 -84.94 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -0.34 Total: 19.70 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 6.69 Total: -7.29 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -6.40 Total: -98.80 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.11 Total: -37.73 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.05 Total: 50.91 kcal Atomic # 16 Polarization: -10.63 SS G_CDS: -1.11 Total: -11.74 kcal Total: -85.73 0.78 -84.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524877490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.296 kcal (2) G-P(sol) polarization free energy of solvation -85.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds