Wall clock time and date at job start Tue Mar 31 2020 20:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47216 * 2 1 4 4 C 1.46499 * 120.00012 * 90.00076 * 3 2 1 5 5 C 1.53004 * 109.47198 * 270.00064 * 4 3 2 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21513 * 120.00315 * 359.72062 * 7 6 5 9 9 C 1.48138 * 119.99521 * 179.72359 * 7 6 5 10 10 C 1.40115 * 121.14231 * 179.71766 * 9 7 6 11 11 C 1.38499 * 117.82352 * 179.74211 * 10 9 7 12 12 N 1.31925 * 119.96724 * 0.54118 * 11 10 9 13 13 N 1.28275 * 122.51591 * 359.72074 * 12 11 10 14 14 C 1.31925 * 122.32550 * 359.97438 * 13 12 11 15 15 C 1.34773 * 119.99855 * 270.00208 * 3 2 1 16 16 O 1.21287 * 119.99643 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00245 * 359.97438 * 15 3 2 18 18 S 1.81000 * 109.47134 * 179.97438 * 17 15 3 19 19 C 1.76200 * 99.99948 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99825 * 0.02562 * 19 18 17 21 21 C 1.38804 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99706 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47302 * 120.00082 * 23 21 19 26 26 H 1.48501 * 109.47431 * 239.99966 * 23 21 19 27 27 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47207 * 300.00256 * 1 2 3 29 29 H 1.09000 * 109.47106 * 59.99699 * 1 2 3 30 30 H 1.09000 * 109.47343 * 240.00279 * 2 1 3 31 31 H 1.08993 * 109.47392 * 120.00042 * 2 1 3 32 32 H 1.08995 * 109.47424 * 150.00425 * 4 3 2 33 33 H 1.09006 * 109.46868 * 29.99976 * 4 3 2 34 34 H 1.09009 * 109.46730 * 59.99787 * 5 4 3 35 35 H 1.08998 * 109.46846 * 300.00332 * 5 4 3 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 37 37 H 1.08005 * 121.08895 * 359.97438 * 10 9 7 38 38 H 1.07994 * 120.01964 * 180.25655 * 11 10 9 39 39 H 1.08000 * 120.17553 * 179.97438 * 14 13 12 40 40 H 1.08996 * 109.47045 * 299.99944 * 17 15 3 41 41 H 1.08998 * 109.47351 * 60.00086 * 17 15 3 42 42 H 0.97004 * 119.99709 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9875 2.7931 1.7104 6 7 1.2315 3.4832 2.9795 7 6 0.2417 4.1852 3.5659 8 8 -0.8516 4.2500 3.0396 9 6 0.4867 4.8780 4.8522 10 6 -0.5232 5.6192 5.4799 11 6 -0.2206 6.2343 6.6834 12 7 0.9897 6.1202 7.1958 13 7 1.9201 5.4476 6.6236 14 6 1.7343 4.8192 5.4786 15 6 2.2429 2.0166 -1.1672 16 8 2.6468 3.1602 -1.1671 17 6 1.9922 1.3060 -2.4723 18 16 2.3834 2.4153 -3.8480 19 6 2.0115 1.3587 -5.2082 20 1 1.6571 0.3542 -5.0305 21 6 2.1731 1.8179 -6.5081 22 7 2.6046 3.0424 -6.7246 23 14 1.7782 0.6980 -7.9501 24 1 1.3139 -0.6179 -7.4422 25 1 0.7095 1.3139 -8.7770 26 1 2.9966 0.5080 -8.7775 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.0643 2.7985 1.1384 33 1 2.5506 1.3451 2.0284 34 1 0.1855 2.0664 1.8407 35 1 0.6994 3.5197 0.9508 36 1 2.1042 3.4312 3.3998 37 1 -1.5066 5.7048 5.0416 38 1 -0.9736 6.8110 7.1997 39 1 2.5426 4.2631 5.0271 40 1 2.6227 0.4188 -2.5299 41 1 0.9444 1.0115 -2.5303 42 1 2.7171 3.3634 -7.6331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529142345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:58 Heat of formation + Delta-G solvation = -6.991483 kcal Electronic energy + Delta-G solvation = -25540.146244 eV Core-core repulsion = 21647.571723 eV Total energy + Delta-G solvation = -3892.574521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71269 -40.09704 -39.51612 -36.36304 -35.21599 -33.81663 -33.18912 -32.46383 -31.38571 -29.95197 -28.31371 -25.95306 -25.49670 -25.07226 -23.43510 -23.10515 -21.52564 -19.45184 -18.68083 -18.20430 -17.77255 -16.97468 -16.89792 -16.36750 -15.96610 -15.87579 -15.64363 -15.25075 -15.02080 -14.83629 -14.14988 -14.04072 -13.97897 -13.93586 -13.78913 -13.39981 -13.14765 -12.62130 -12.45812 -11.99049 -11.93520 -11.61693 -11.55617 -11.14999 -11.08318 -11.05122 -10.98234 -10.79008 -10.78168 -10.70915 -10.18695 -9.83730 -9.55434 -9.50290 -9.10731 -8.80136 -8.26953 -6.54433 -6.25223 -3.96154 -0.23303 0.28457 2.25440 2.30362 2.91375 2.93998 3.09458 3.19085 3.23323 3.28510 3.48010 3.53297 3.71745 3.94446 4.02672 4.16546 4.27571 4.52549 4.58467 4.70696 4.80005 4.93684 5.04001 5.09120 5.09941 5.13578 5.20028 5.27269 5.45783 5.50450 5.52590 5.64883 5.69836 5.73746 5.84217 5.87108 6.00270 6.16878 6.49430 6.86332 7.36105 7.56563 7.57848 8.06173 8.31864 8.41596 9.20334 10.82238 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.001936 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.985687 B =14457.618878 C =14824.717256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.108 3.892 5 C 0.100 3.900 6 N -0.715 5.715 7 C 0.562 3.438 8 O -0.518 6.518 9 C -0.130 4.130 10 C -0.057 4.057 11 C 0.040 3.960 12 N -0.228 5.228 13 N -0.241 5.241 14 C 0.070 3.930 15 C 0.535 3.465 16 O -0.511 6.511 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.401 0.599 37 H 0.165 0.835 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.474 -3.034 25.635 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.017 4.017 5 C -0.024 4.024 6 N -0.367 5.367 7 C 0.346 3.654 8 O -0.394 6.394 9 C -0.145 4.145 10 C -0.087 4.087 11 C -0.124 4.124 12 N -0.070 5.070 13 N -0.082 5.082 14 C -0.095 4.095 15 C 0.323 3.677 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.236 0.764 37 H 0.183 0.817 38 H 0.199 0.801 39 H 0.193 0.807 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.551 -0.794 26.305 26.555 hybrid contribution -1.395 -2.476 -1.958 3.451 sum -4.946 -3.269 24.346 25.058 Atomic orbital electron populations 1.22323 0.95857 1.02436 1.02912 1.21609 0.94580 0.82013 1.03484 1.47897 1.68186 1.14362 1.04963 1.21448 0.96747 0.97356 0.86109 1.22025 0.99015 0.96942 0.84464 1.45721 1.14497 1.51995 1.24511 1.17861 0.84684 0.79073 0.83776 1.90842 1.23605 1.60823 1.64110 1.21248 0.95927 1.00237 0.97066 1.22693 1.00825 0.91213 0.93938 1.24459 0.96545 0.97592 0.93816 1.72928 0.98789 1.09258 1.26012 1.73106 1.23890 1.04002 1.07176 1.24564 0.95998 0.95965 0.92995 1.20429 0.76162 0.86496 0.84609 1.90712 1.43615 1.17383 1.86730 1.23583 1.04914 1.04564 0.97036 1.85416 1.86880 1.17849 0.93400 1.22887 1.51820 1.01439 0.92140 0.90856 1.24999 0.94645 0.95556 0.98415 1.70026 1.42971 1.15607 1.21603 0.86114 0.78189 0.80064 0.81108 1.19600 1.20561 1.20553 0.91420 0.92362 0.91720 0.89587 0.90475 0.88993 0.90076 0.90563 0.90075 0.76351 0.81730 0.80060 0.80749 0.89160 0.89070 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 10.24 37.15 0.38 -1.21 16 2 C 0.11 0.97 5.98 -4.04 -0.02 0.95 16 3 N -0.62 -7.51 2.47 -173.69 -0.43 -7.94 16 4 C 0.11 1.01 5.56 -4.04 -0.02 0.99 16 5 C 0.10 1.00 6.00 -4.04 -0.02 0.97 16 6 N -0.71 -5.58 5.52 -61.15 -0.34 -5.91 16 7 C 0.56 5.47 7.80 -12.20 -0.10 5.37 16 8 O -0.52 -7.03 16.49 5.35 0.09 -6.95 16 9 C -0.13 -1.01 5.92 -104.57 -0.62 -1.63 16 10 C -0.06 -0.38 9.77 -38.78 -0.38 -0.76 16 11 C 0.04 0.25 11.30 -17.42 -0.20 0.05 16 12 N -0.23 -2.09 11.48 30.53 0.35 -1.74 16 13 N -0.24 -2.25 11.49 30.78 0.35 -1.90 16 14 C 0.07 0.48 10.84 -16.96 -0.18 0.30 16 15 C 0.53 9.40 7.69 -10.99 -0.08 9.31 16 16 O -0.51 -10.92 15.44 5.55 0.09 -10.84 16 17 C -0.15 -2.91 4.71 36.01 0.17 -2.74 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -14.94 9.50 30.94 0.29 -14.65 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 23 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.50 6.26 -51.93 -0.33 0.18 16 29 H 0.06 0.72 7.22 -51.93 -0.38 0.34 16 30 H 0.09 0.82 6.44 -51.93 -0.33 0.49 16 31 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 32 H 0.09 0.98 7.42 -51.93 -0.39 0.59 16 33 H 0.08 0.48 7.89 -51.93 -0.41 0.07 16 34 H 0.08 0.76 6.26 -51.92 -0.33 0.43 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 1.79 6.63 -40.82 -0.27 1.52 16 37 H 0.17 0.91 7.80 -52.48 -0.41 0.50 16 38 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.18 0.60 6.53 -52.49 -0.34 0.25 16 40 H 0.09 1.60 7.40 -51.92 -0.38 1.22 16 41 H 0.09 1.65 7.19 -51.92 -0.37 1.27 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -37.95 373.77 -6.80 -44.74 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.16 Total: -1.13 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.88 Total: -1.08 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.67 Total: -42.63 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.78 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.95 -6.80 -44.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529142345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.751 kcal (2) G-P(sol) polarization free energy of solvation -37.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds