Wall clock time and date at job start Tue Mar 31 2020 20:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47216 * 2 1 4 4 C 1.46499 * 120.00012 * 90.00076 * 3 2 1 5 5 C 1.53004 * 109.47198 * 270.00064 * 4 3 2 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21513 * 120.00315 * 359.72062 * 7 6 5 9 9 C 1.48138 * 119.99521 * 179.72359 * 7 6 5 10 10 C 1.40115 * 121.14231 * 179.71766 * 9 7 6 11 11 C 1.38499 * 117.82352 * 179.74211 * 10 9 7 12 12 N 1.31925 * 119.96724 * 0.54118 * 11 10 9 13 13 N 1.28275 * 122.51591 * 359.72074 * 12 11 10 14 14 C 1.31925 * 122.32550 * 359.97438 * 13 12 11 15 15 C 1.34773 * 119.99855 * 270.00208 * 3 2 1 16 16 O 1.21287 * 119.99643 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00245 * 359.97438 * 15 3 2 18 18 S 1.81000 * 109.47134 * 179.97438 * 17 15 3 19 19 C 1.76200 * 99.99948 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99825 * 0.02562 * 19 18 17 21 21 C 1.38804 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99706 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47302 * 120.00082 * 23 21 19 26 26 H 1.48501 * 109.47431 * 239.99966 * 23 21 19 27 27 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47207 * 300.00256 * 1 2 3 29 29 H 1.09000 * 109.47106 * 59.99699 * 1 2 3 30 30 H 1.09000 * 109.47343 * 240.00279 * 2 1 3 31 31 H 1.08993 * 109.47392 * 120.00042 * 2 1 3 32 32 H 1.08995 * 109.47424 * 150.00425 * 4 3 2 33 33 H 1.09006 * 109.46868 * 29.99976 * 4 3 2 34 34 H 1.09009 * 109.46730 * 59.99787 * 5 4 3 35 35 H 1.08998 * 109.46846 * 300.00332 * 5 4 3 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 37 37 H 1.08005 * 121.08895 * 359.97438 * 10 9 7 38 38 H 1.07994 * 120.01964 * 180.25655 * 11 10 9 39 39 H 1.08000 * 120.17553 * 179.97438 * 14 13 12 40 40 H 1.08996 * 109.47045 * 299.99944 * 17 15 3 41 41 H 1.08998 * 109.47351 * 60.00086 * 17 15 3 42 42 H 0.97004 * 119.99709 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9875 2.7931 1.7104 6 7 1.2315 3.4832 2.9795 7 6 0.2417 4.1852 3.5659 8 8 -0.8516 4.2500 3.0396 9 6 0.4867 4.8780 4.8522 10 6 -0.5232 5.6192 5.4799 11 6 -0.2206 6.2343 6.6834 12 7 0.9897 6.1202 7.1958 13 7 1.9201 5.4476 6.6236 14 6 1.7343 4.8192 5.4786 15 6 2.2429 2.0166 -1.1672 16 8 2.6468 3.1602 -1.1671 17 6 1.9922 1.3060 -2.4723 18 16 2.3834 2.4153 -3.8480 19 6 2.0115 1.3587 -5.2082 20 1 1.6571 0.3542 -5.0305 21 6 2.1731 1.8179 -6.5081 22 7 2.6046 3.0424 -6.7246 23 14 1.7782 0.6980 -7.9501 24 1 1.3139 -0.6179 -7.4422 25 1 0.7095 1.3139 -8.7770 26 1 2.9966 0.5080 -8.7775 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.0643 2.7985 1.1384 33 1 2.5506 1.3451 2.0284 34 1 0.1855 2.0664 1.8407 35 1 0.6994 3.5197 0.9508 36 1 2.1042 3.4312 3.3998 37 1 -1.5066 5.7048 5.0416 38 1 -0.9736 6.8110 7.1997 39 1 2.5426 4.2631 5.0271 40 1 2.6227 0.4188 -2.5299 41 1 0.9444 1.0115 -2.5303 42 1 2.7171 3.3634 -7.6331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001529142345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:58 Heat of formation + Delta-G solvation = -35.718512 kcal Electronic energy + Delta-G solvation = -25541.391941 eV Core-core repulsion = 21647.571723 eV Total energy + Delta-G solvation = -3893.820218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31470 -41.12985 -40.48820 -37.47491 -36.10872 -34.59266 -34.44328 -33.75602 -32.25598 -31.17012 -29.39914 -27.68169 -26.58912 -25.63113 -24.37047 -23.91029 -22.28573 -20.66145 -19.64261 -19.35418 -18.79584 -18.21667 -17.49412 -17.29659 -16.89704 -16.85402 -16.76610 -16.53022 -16.10706 -15.88806 -15.75089 -14.97915 -14.85678 -14.83155 -14.52443 -14.46751 -14.39420 -14.15655 -13.48390 -13.24224 -13.11438 -12.92402 -12.73453 -12.61798 -12.40841 -12.09988 -11.92388 -11.77687 -11.69062 -11.40886 -11.26548 -11.16488 -10.93949 -10.80623 -10.34779 -10.26714 -9.86019 -8.67699 -8.35605 -6.13540 -0.83766 -0.21573 1.22182 1.40364 1.40773 1.50725 1.54032 1.56740 1.72403 2.21850 2.27533 2.51097 2.98811 2.99368 3.15051 3.24742 3.44564 3.45235 3.65029 3.74660 3.80026 3.97756 4.10304 4.20700 4.31192 4.32487 4.39397 4.48520 4.53998 4.59685 4.69941 4.72588 4.77000 4.92521 4.99758 5.03657 5.11085 5.37924 5.41495 5.57512 6.18901 6.20849 6.21869 6.87878 7.05976 7.11038 7.50289 8.73799 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.001936 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.985687 B =14457.618878 C =14824.717256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.108 3.892 5 C 0.109 3.891 6 N -0.699 5.699 7 C 0.564 3.436 8 O -0.563 6.563 9 C -0.140 4.140 10 C -0.054 4.054 11 C 0.049 3.951 12 N -0.257 5.257 13 N -0.270 5.270 14 C 0.078 3.922 15 C 0.533 3.467 16 O -0.560 6.560 17 C -0.125 4.125 18 S -0.155 6.155 19 C -0.543 4.543 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.255 1.255 25 H -0.276 1.276 26 H -0.273 1.273 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.420 0.580 37 H 0.175 0.825 38 H 0.217 0.783 39 H 0.206 0.794 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 -5.691 27.280 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 N -0.336 5.336 4 C -0.015 4.015 5 C -0.016 4.016 6 N -0.352 5.352 7 C 0.349 3.651 8 O -0.442 6.442 9 C -0.155 4.155 10 C -0.085 4.085 11 C -0.116 4.116 12 N -0.098 5.098 13 N -0.110 5.110 14 C -0.087 4.087 15 C 0.321 3.679 16 O -0.438 6.438 17 C -0.276 4.276 18 S 0.072 5.928 19 C -0.691 4.691 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.199 1.199 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.258 0.742 37 H 0.192 0.808 38 H 0.233 0.767 39 H 0.223 0.777 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.862 -3.496 28.025 28.505 hybrid contribution -1.347 -1.674 -2.318 3.161 sum -5.208 -5.170 25.707 26.734 Atomic orbital electron populations 1.22296 0.95683 1.03545 1.01718 1.21961 0.94663 0.80093 1.05587 1.47855 1.66207 1.15380 1.04190 1.21685 0.95825 0.98337 0.85658 1.21772 0.99560 0.95997 0.84222 1.45537 1.15129 1.51055 1.23527 1.18130 0.84189 0.78658 0.84093 1.90823 1.25430 1.62504 1.65419 1.21148 0.96893 1.00998 0.96419 1.22945 1.01101 0.90453 0.93955 1.24946 0.96228 0.96991 0.93445 1.72837 0.99832 1.10057 1.27050 1.73044 1.24618 1.05112 1.08257 1.24944 0.96369 0.95262 0.92124 1.20146 0.76275 0.85866 0.85608 1.90695 1.46288 1.19318 1.87463 1.23406 1.05887 1.03197 0.95071 1.85582 1.87621 1.22120 0.97434 1.23218 1.51630 1.01683 0.92598 0.89874 1.26133 0.94209 0.97165 1.01730 1.70191 1.44346 1.17849 1.22396 0.84910 0.78069 0.78231 0.76778 1.17877 1.20109 1.19887 0.89153 0.91953 0.94541 0.89786 0.86131 0.90193 0.84878 0.89997 0.94466 0.74160 0.80765 0.76657 0.77695 0.87174 0.87804 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 71.98 0.74 -1.94 16 2 C 0.10 1.45 5.98 86.38 0.52 1.97 16 3 N -0.60 -13.48 2.47 -821.81 -2.03 -15.51 16 4 C 0.11 1.76 5.56 86.38 0.48 2.24 16 5 C 0.11 2.08 6.00 86.38 0.52 2.59 16 6 N -0.70 -9.81 5.52 -465.68 -2.57 -12.38 16 7 C 0.56 10.53 7.80 86.87 0.68 11.21 16 8 O -0.56 -15.38 16.49 -3.76 -0.06 -15.44 16 9 C -0.14 -2.01 5.92 -19.83 -0.12 -2.12 16 10 C -0.05 -0.67 9.77 22.79 0.22 -0.44 16 11 C 0.05 0.53 11.30 84.74 0.96 1.49 16 12 N -0.26 -4.45 11.48 -57.34 -0.66 -5.11 16 13 N -0.27 -4.77 11.49 -56.54 -0.65 -5.42 16 14 C 0.08 0.96 10.84 85.04 0.92 1.88 16 15 C 0.53 18.76 7.69 87.66 0.67 19.44 16 16 O -0.56 -24.82 15.44 -3.05 -0.05 -24.87 16 17 C -0.12 -4.82 4.71 71.24 0.34 -4.49 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.54 -30.75 9.50 67.96 0.65 -30.10 16 20 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.70 5.49 84.86 0.47 1.16 16 22 N -0.91 -55.84 13.22 21.65 0.29 -55.56 16 23 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.92 6.26 -2.39 -0.01 0.90 16 29 H 0.04 0.77 7.22 -2.39 -0.02 0.75 16 30 H 0.08 1.33 6.44 -2.39 -0.02 1.31 16 31 H 0.12 0.85 7.89 -2.39 -0.02 0.84 16 32 H 0.08 1.58 7.42 -2.39 -0.02 1.56 16 33 H 0.13 0.88 7.89 -2.38 -0.02 0.86 16 34 H 0.08 1.49 6.26 -2.38 -0.01 1.47 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.42 2.64 6.63 -92.71 -0.61 2.03 16 37 H 0.17 1.75 7.80 -2.91 -0.02 1.73 16 38 H 0.22 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.21 0.86 6.53 -2.91 -0.02 0.84 16 40 H 0.11 3.79 7.40 -2.40 -0.02 3.77 16 41 H 0.10 3.73 7.19 -2.40 -0.02 3.71 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -88.40 373.77 2.63 -85.78 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.46 Total: 10.00 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 7.04 Total: 2.88 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -5.62 Total: -93.98 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.11 Total: -40.31 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -88.40 2.63 -85.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529142345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.058 kcal (2) G-P(sol) polarization free energy of solvation -88.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds