Wall clock time and date at job start Tue Mar 31 2020 20:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.47339 * 2 1 4 4 C 1.34254 * 125.76039 * 124.99857 * 3 2 1 5 5 C 1.38042 * 107.42183 * 180.02562 * 4 3 2 6 6 C 1.47436 * 126.41722 * 179.97438 * 5 4 3 7 7 O 1.21603 * 119.99805 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00057 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99895 * 179.97438 * 8 6 5 10 10 C 1.53501 * 114.20747 * 204.99407 * 9 8 6 11 11 N 1.47065 * 87.98741 * 220.14872 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31634 * 120.00298 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99861 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47644 * 89.99884 * 20 18 16 22 22 H 1.48506 * 109.47143 * 209.99830 * 20 18 16 23 23 H 1.48501 * 109.47120 * 329.99545 * 20 18 16 24 24 C 1.47067 * 87.88381 * 27.34024 * 11 10 9 25 25 C 1.41291 * 107.17109 * 0.22892 * 5 4 3 26 26 N 1.30449 * 108.01686 * 359.61184 * 25 5 4 27 27 H 1.08998 * 109.47040 * 60.00630 * 1 2 3 28 28 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47141 * 299.99714 * 1 2 3 30 30 H 1.08999 * 109.47081 * 239.99501 * 2 1 3 31 31 H 1.09002 * 109.47355 * 120.00050 * 2 1 3 32 32 H 1.08003 * 126.28649 * 0.04407 * 4 3 2 33 33 H 0.97001 * 120.00444 * 359.97438 * 8 6 5 34 34 H 1.09001 * 113.28417 * 338.06104 * 9 8 6 35 35 H 1.09001 * 113.46643 * 105.36573 * 10 9 8 36 36 H 1.08996 * 113.46488 * 334.93033 * 10 9 8 37 37 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 38 38 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 39 39 H 0.96995 * 120.00138 * 180.02562 * 19 18 16 40 40 H 1.09010 * 113.46411 * 87.43777 * 24 11 10 41 41 H 1.08997 * 113.47100 * 217.87349 * 24 11 10 42 42 H 1.07996 * 125.99021 * 179.74143 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8690 1.9125 0.8924 5 6 3.0705 3.2311 0.5370 6 6 3.9314 4.2038 1.2343 7 8 4.5487 3.8676 2.2267 8 7 4.0335 5.4658 0.7727 9 6 4.8885 6.4325 1.4660 10 6 4.4821 7.8976 1.2544 11 7 5.9121 8.2256 1.1538 12 6 6.6784 9.3086 1.3912 13 8 6.1709 10.3342 1.7931 14 6 8.1656 9.2456 1.1561 15 16 8.9088 10.8453 1.5621 16 6 10.5990 10.4963 1.2068 17 1 10.8851 9.5175 0.8513 18 6 11.5618 11.4813 1.3779 19 7 12.8246 11.2205 1.1129 20 14 11.0659 13.1766 1.9855 21 1 11.1267 13.2083 3.4689 22 1 11.9954 14.1930 1.4302 23 1 9.6813 13.4766 1.5404 24 6 6.1372 6.8538 0.6740 25 6 2.2926 3.4756 -0.6169 26 7 1.6764 2.3693 -0.9299 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.3142 1.4020 1.7337 33 1 3.5408 5.7342 -0.0187 34 1 5.0826 6.1683 2.5055 35 1 3.9946 8.3424 2.1219 36 1 3.9319 8.0660 0.3287 37 1 8.3584 9.0110 0.1093 38 1 8.6008 8.4715 1.7881 39 1 13.4975 11.9087 1.2329 40 1 6.0234 6.7471 -0.4049 41 1 7.0600 6.4093 1.0469 42 1 2.2224 4.4134 -1.1479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530384792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:27 Heat of formation + Delta-G solvation = 48.973884 kcal Electronic energy + Delta-G solvation = -25001.328428 eV Core-core repulsion = 21111.180748 eV Total energy + Delta-G solvation = -3890.147680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.87873 -40.66901 -39.09113 -37.56839 -35.12720 -34.06303 -32.43131 -31.08200 -30.72176 -29.94041 -27.75036 -26.13766 -25.58536 -24.71174 -23.61336 -21.78602 -21.12241 -20.57063 -19.19744 -18.33672 -17.73786 -16.96992 -16.74822 -16.42808 -16.19574 -15.60418 -15.19092 -15.09375 -14.94006 -14.76478 -14.41223 -14.26299 -13.93525 -13.46395 -13.30114 -13.08646 -12.99750 -12.84665 -12.77826 -12.73654 -12.60043 -12.13807 -11.91829 -11.46261 -11.35053 -11.24565 -10.99886 -10.61523 -10.22670 -10.12316 -9.85458 -9.61893 -9.42352 -9.11774 -8.99558 -8.74820 -8.50405 -6.92006 -6.27976 -4.00183 1.07359 1.70801 1.77438 2.42971 2.80464 2.96947 3.08386 3.24844 3.34422 3.51373 3.58329 3.81315 4.07186 4.22042 4.26391 4.33601 4.34870 4.45139 4.52480 4.61764 4.70167 4.83626 4.87671 4.97815 5.02882 5.11051 5.13109 5.18315 5.21749 5.34983 5.45832 5.47345 5.66831 5.78363 5.82255 5.89263 6.02752 6.16649 6.28750 7.00642 7.18346 7.70601 7.94728 7.95024 8.37444 8.42809 9.18012 10.81214 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035628 B = 0.001665 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.714673 B =16810.080311 C =17188.418627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 N -0.360 5.360 4 C 0.131 3.869 5 C -0.297 4.297 6 C 0.600 3.400 7 O -0.544 6.544 8 N -0.714 5.714 9 C 0.114 3.886 10 C 0.098 3.902 11 N -0.648 5.648 12 C 0.566 3.434 13 O -0.514 6.514 14 C -0.116 4.116 15 S -0.141 6.141 16 C -0.521 4.521 17 H 0.089 0.911 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.085 3.915 25 C 0.082 3.918 26 N -0.294 5.294 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.189 0.811 33 H 0.402 0.598 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.198 -24.397 -4.192 36.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.004 3.996 3 N -0.139 5.139 4 C -0.021 4.021 5 C -0.312 4.312 6 C 0.388 3.612 7 O -0.422 6.422 8 N -0.365 5.365 9 C 0.007 3.993 10 C -0.027 4.027 11 N -0.387 5.387 12 C 0.355 3.645 13 O -0.387 6.387 14 C -0.266 4.266 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.107 0.893 18 C -0.112 4.112 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.040 4.040 25 C -0.107 4.107 26 N -0.114 5.114 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.206 0.794 33 H 0.237 0.763 34 H 0.152 0.848 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -27.027 -23.563 -3.668 36.044 hybrid contribution 1.081 0.024 -0.225 1.105 sum -25.946 -23.539 -3.893 35.249 Atomic orbital electron populations 1.22064 0.93265 1.03272 1.03817 1.21874 0.96541 0.76699 1.04480 1.48684 1.34166 1.10711 1.20331 1.23034 0.91217 0.93570 0.94234 1.20195 1.11817 0.95423 1.03722 1.17231 0.79871 0.81097 0.82962 1.90808 1.46688 1.78555 1.26122 1.45528 1.48772 1.10476 1.31739 1.22886 0.90512 0.87067 0.98788 1.23227 0.84798 0.91947 1.02698 1.49272 1.08915 1.12692 1.67869 1.19866 0.87949 0.80503 0.76162 1.90719 1.74471 1.28788 1.44754 1.23218 0.92561 1.05243 1.05584 1.84780 1.06585 1.11911 1.88226 1.22306 0.89501 1.03143 1.51949 0.89343 1.24703 0.94009 0.98783 0.93734 1.69938 1.00338 1.34690 1.46670 0.86738 0.81088 0.83736 0.80315 1.19166 1.19912 1.15930 1.23569 0.99967 0.80713 0.99711 1.24082 0.94081 0.97520 0.94970 1.77162 1.23831 0.97019 1.13362 0.90882 0.90336 0.91897 0.89118 0.88071 0.79425 0.76294 0.84797 0.89593 0.89688 0.88465 0.88383 0.91932 0.89418 0.89458 0.79308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.45 10.09 37.16 0.37 -0.07 16 2 C 0.12 0.34 7.21 -4.05 -0.03 0.32 16 3 N -0.36 -2.21 3.65 -60.81 -0.22 -2.43 16 4 C 0.13 0.86 11.25 -16.56 -0.19 0.68 16 5 C -0.30 -2.26 6.13 -105.06 -0.64 -2.90 16 6 C 0.60 5.57 7.81 -12.52 -0.10 5.47 16 7 O -0.54 -7.12 16.49 5.28 0.09 -7.04 16 8 N -0.71 -4.93 5.38 -54.56 -0.29 -5.22 16 9 C 0.11 1.00 4.62 -67.67 -0.31 0.69 16 10 C 0.10 0.94 8.38 -8.51 -0.07 0.87 16 11 N -0.65 -8.78 3.69 -185.08 -0.68 -9.47 16 12 C 0.57 10.55 8.10 -10.99 -0.09 10.46 16 13 O -0.51 -11.49 16.64 5.56 0.09 -11.40 16 14 C -0.12 -2.32 5.98 36.00 0.22 -2.11 16 15 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 16 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 17 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 18 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 19 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 20 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 24 C 0.09 0.84 8.25 -8.38 -0.07 0.77 16 25 C 0.08 0.52 11.50 -16.98 -0.20 0.32 16 26 N -0.29 -2.28 12.33 30.86 0.38 -1.90 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.04 8.06 -51.93 -0.42 -0.38 16 32 H 0.19 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.40 1.58 7.71 -40.82 -0.31 1.26 16 34 H 0.13 1.41 7.45 -51.93 -0.39 1.02 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.63 8.13 -51.93 -0.42 0.20 16 37 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 38 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.19 0.55 7.50 -52.49 -0.39 0.16 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -39.12 380.77 -7.46 -46.58 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.74 Total: -2.91 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.89 Total: 2.38 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.04 Total: -44.94 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.12 -7.46 -46.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530384792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.555 kcal (2) G-P(sol) polarization free energy of solvation -39.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds