Wall clock time and date at job start Tue Mar 31 2020 20:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.47339 * 2 1 4 4 C 1.34254 * 125.76039 * 124.99857 * 3 2 1 5 5 C 1.38042 * 107.42183 * 180.02562 * 4 3 2 6 6 C 1.47436 * 126.41722 * 179.97438 * 5 4 3 7 7 O 1.21603 * 119.99805 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00057 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99895 * 179.97438 * 8 6 5 10 10 C 1.53501 * 114.20747 * 204.99407 * 9 8 6 11 11 N 1.47065 * 87.98741 * 220.14872 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31634 * 120.00298 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99861 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47644 * 89.99884 * 20 18 16 22 22 H 1.48506 * 109.47143 * 209.99830 * 20 18 16 23 23 H 1.48501 * 109.47120 * 329.99545 * 20 18 16 24 24 C 1.47067 * 87.88381 * 27.34024 * 11 10 9 25 25 C 1.41291 * 107.17109 * 0.22892 * 5 4 3 26 26 N 1.30449 * 108.01686 * 359.61184 * 25 5 4 27 27 H 1.08998 * 109.47040 * 60.00630 * 1 2 3 28 28 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47141 * 299.99714 * 1 2 3 30 30 H 1.08999 * 109.47081 * 239.99501 * 2 1 3 31 31 H 1.09002 * 109.47355 * 120.00050 * 2 1 3 32 32 H 1.08003 * 126.28649 * 0.04407 * 4 3 2 33 33 H 0.97001 * 120.00444 * 359.97438 * 8 6 5 34 34 H 1.09001 * 113.28417 * 338.06104 * 9 8 6 35 35 H 1.09001 * 113.46643 * 105.36573 * 10 9 8 36 36 H 1.08996 * 113.46488 * 334.93033 * 10 9 8 37 37 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 38 38 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 39 39 H 0.96995 * 120.00138 * 180.02562 * 19 18 16 40 40 H 1.09010 * 113.46411 * 87.43777 * 24 11 10 41 41 H 1.08997 * 113.47100 * 217.87349 * 24 11 10 42 42 H 1.07996 * 125.99021 * 179.74143 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8690 1.9125 0.8924 5 6 3.0705 3.2311 0.5370 6 6 3.9314 4.2038 1.2343 7 8 4.5487 3.8676 2.2267 8 7 4.0335 5.4658 0.7727 9 6 4.8885 6.4325 1.4660 10 6 4.4821 7.8976 1.2544 11 7 5.9121 8.2256 1.1538 12 6 6.6784 9.3086 1.3912 13 8 6.1709 10.3342 1.7931 14 6 8.1656 9.2456 1.1561 15 16 8.9088 10.8453 1.5621 16 6 10.5990 10.4963 1.2068 17 1 10.8851 9.5175 0.8513 18 6 11.5618 11.4813 1.3779 19 7 12.8246 11.2205 1.1129 20 14 11.0659 13.1766 1.9855 21 1 11.1267 13.2083 3.4689 22 1 11.9954 14.1930 1.4302 23 1 9.6813 13.4766 1.5404 24 6 6.1372 6.8538 0.6740 25 6 2.2926 3.4756 -0.6169 26 7 1.6764 2.3693 -0.9299 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.3142 1.4020 1.7337 33 1 3.5408 5.7342 -0.0187 34 1 5.0826 6.1683 2.5055 35 1 3.9946 8.3424 2.1219 36 1 3.9319 8.0660 0.3287 37 1 8.3584 9.0110 0.1093 38 1 8.6008 8.4715 1.7881 39 1 13.4975 11.9087 1.2329 40 1 6.0234 6.7471 -0.4049 41 1 7.0600 6.4093 1.0469 42 1 2.2224 4.4134 -1.1479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530384792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:27 Heat of formation + Delta-G solvation = 19.470808 kcal Electronic energy + Delta-G solvation = -25002.607777 eV Core-core repulsion = 21111.180748 eV Total energy + Delta-G solvation = -3891.427029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.37174 -41.62385 -40.04161 -38.78185 -35.49868 -34.83693 -34.68129 -31.98108 -31.51952 -30.63144 -28.87289 -27.85306 -26.97095 -25.15189 -24.19175 -22.59957 -21.58821 -21.20666 -20.47375 -19.56171 -18.86379 -18.16028 -17.73103 -17.19614 -16.99871 -16.82577 -16.56762 -16.28872 -15.89289 -15.66685 -15.33668 -15.25061 -14.91646 -14.69205 -14.45189 -14.11548 -13.88688 -13.72621 -13.62533 -13.35597 -13.35160 -13.16308 -13.01188 -12.96738 -12.67264 -12.45257 -12.18870 -11.90282 -11.86958 -11.17846 -11.17044 -10.88866 -10.57370 -10.57278 -10.18124 -9.86121 -9.62858 -9.02405 -8.52255 -6.24209 0.55450 0.90847 1.20434 1.31644 1.35506 1.42395 1.47741 1.51314 1.82621 2.24588 2.40024 2.44294 2.65255 2.85917 3.25060 3.48017 3.49925 3.80607 3.83810 3.99467 4.06180 4.09327 4.13717 4.21588 4.37001 4.39361 4.43387 4.44301 4.55318 4.60817 4.71083 4.79748 4.81578 4.90086 4.99112 5.22435 5.42758 5.51367 5.69799 5.90141 6.10264 6.45495 6.53747 6.66131 6.92461 6.99117 7.29756 8.60187 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035628 B = 0.001665 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.714673 B =16810.080311 C =17188.418627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.359 5.359 4 C 0.130 3.870 5 C -0.316 4.316 6 C 0.602 3.398 7 O -0.588 6.588 8 N -0.696 5.696 9 C 0.129 3.871 10 C 0.100 3.900 11 N -0.648 5.648 12 C 0.567 3.433 13 O -0.560 6.560 14 C -0.103 4.103 15 S -0.171 6.171 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.047 3.953 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.257 1.257 23 H -0.236 1.236 24 C 0.083 3.917 25 C 0.088 3.912 26 N -0.324 5.324 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.204 0.796 33 H 0.420 0.580 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.278 0.722 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.164 -25.401 -4.973 38.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.137 5.137 4 C -0.023 4.023 5 C -0.331 4.331 6 C 0.392 3.608 7 O -0.469 6.469 8 N -0.348 5.348 9 C 0.022 3.978 10 C -0.023 4.023 11 N -0.385 5.385 12 C 0.356 3.644 13 O -0.439 6.439 14 C -0.253 4.253 15 S 0.055 5.945 16 C -0.679 4.679 17 H 0.079 0.921 18 C -0.158 4.158 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.181 1.181 23 H -0.160 1.160 24 C -0.040 4.040 25 C -0.100 4.100 26 N -0.144 5.144 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.220 0.780 33 H 0.259 0.741 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -29.044 -24.630 -4.509 38.347 hybrid contribution 1.583 0.068 -0.032 1.585 sum -27.461 -24.562 -4.541 37.122 Atomic orbital electron populations 1.22018 0.93278 1.04182 1.02390 1.22217 0.96542 0.75436 1.06204 1.48969 1.33652 1.11452 1.19661 1.23373 0.90832 0.93626 0.94439 1.20159 1.12701 0.95623 1.04652 1.17457 0.79379 0.81635 0.82337 1.90791 1.48617 1.79388 1.28133 1.45288 1.48137 1.09423 1.31936 1.22464 0.90308 0.87029 0.98002 1.23517 0.82649 0.91740 1.04361 1.49135 1.10819 1.12498 1.66016 1.19384 0.87387 0.81188 0.76433 1.90696 1.74956 1.30830 1.47386 1.23167 0.93955 1.01648 1.06561 1.84669 1.04610 1.16607 1.88587 1.22444 0.91685 1.02153 1.51606 0.92051 1.25556 0.93997 1.02412 0.93847 1.70015 1.01387 1.36233 1.47725 0.85868 0.80912 0.79636 0.79963 1.18686 1.18116 1.16032 1.23890 1.00391 0.78169 1.01571 1.24549 0.92808 0.98274 0.94336 1.77130 1.24900 0.97843 1.14523 0.92692 0.88279 0.92810 0.88345 0.85443 0.77958 0.74142 0.86539 0.90050 0.86174 0.87036 0.87444 0.91304 0.86375 0.89772 0.76398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 10.09 71.98 0.73 0.07 16 2 C 0.12 0.43 7.21 86.38 0.62 1.05 16 3 N -0.36 -3.84 3.65 -346.32 -1.26 -5.11 16 4 C 0.13 1.52 11.25 84.28 0.95 2.47 16 5 C -0.32 -4.27 6.13 -20.15 -0.12 -4.40 16 6 C 0.60 10.21 7.81 86.67 0.68 10.89 16 7 O -0.59 -15.03 16.49 -4.04 -0.07 -15.10 16 8 N -0.70 -7.74 5.38 -444.78 -2.39 -10.13 16 9 C 0.13 1.99 4.62 45.55 0.21 2.20 16 10 C 0.10 1.66 8.38 83.18 0.70 2.36 16 11 N -0.65 -16.25 3.69 -857.85 -3.16 -19.41 16 12 C 0.57 20.62 8.10 87.66 0.71 21.33 16 13 O -0.56 -24.91 16.64 -3.02 -0.05 -24.96 16 14 C -0.10 -4.06 5.98 71.24 0.43 -3.64 16 15 S -0.17 -8.85 18.55 -56.49 -1.05 -9.90 16 16 C -0.53 -31.43 10.04 67.95 0.68 -30.75 16 17 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 18 C 0.05 2.81 5.50 84.86 0.47 3.28 16 19 N -0.92 -56.17 13.97 21.65 0.30 -55.86 16 20 Si 0.91 45.34 27.74 68.60 1.90 47.24 16 21 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 24 C 0.08 1.42 8.25 83.26 0.69 2.11 16 25 C 0.09 0.93 11.50 85.65 0.99 1.91 16 26 N -0.32 -4.51 12.33 -56.28 -0.69 -5.21 16 27 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.13 -0.21 8.06 -2.39 -0.02 -0.23 16 32 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.42 1.71 7.71 -92.71 -0.71 0.99 16 34 H 0.12 2.33 7.45 -2.39 -0.02 2.32 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.12 1.24 8.13 -2.39 -0.02 1.22 16 37 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 38 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 39 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 42 H 0.22 0.56 7.50 -2.91 -0.02 0.54 16 Total: -1.00 -86.81 380.77 1.54 -85.27 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 0.30 Total: 4.30 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 7.71 Total: 8.88 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -7.21 Total: -95.73 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.12 Total: -40.06 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -86.81 1.54 -85.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530384792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.737 kcal (2) G-P(sol) polarization free energy of solvation -86.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds