Wall clock time and date at job start Tue Mar 31 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39874 * 119.73080 * 2 1 4 4 C 1.30369 * 121.01225 * 179.97438 * 3 2 1 5 5 C 1.41098 * 120.41821 * 0.02562 * 4 3 2 6 6 N 1.38752 * 120.29119 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00100 * 8.04185 * 6 5 4 8 8 O 1.21671 * 119.99786 * 6.18770 * 7 6 5 9 9 C 1.46816 * 120.00356 * 186.18255 * 7 6 5 10 10 C 1.36172 * 125.44272 * 185.79377 * 9 7 6 11 11 C 1.41683 * 107.74812 * 180.23209 * 10 9 7 12 12 C 1.40023 * 133.34874 * 179.77281 * 11 10 9 13 13 C 1.36580 * 119.83155 * 179.97438 * 12 11 10 14 14 C 1.38858 * 120.59786 * 0.02562 * 13 12 11 15 15 C 1.37840 * 120.63768 * 359.97438 * 14 13 12 16 16 C 1.39091 * 119.81594 * 0.02562 * 15 14 13 17 17 N 1.37834 * 133.16030 * 180.02562 * 16 15 14 18 18 C 1.36889 * 125.62103 * 359.95947 * 17 16 15 19 19 H 1.07993 * 120.00213 * 224.58092 * 18 17 16 20 20 C 1.39016 * 120.00105 * 44.57604 * 18 17 16 21 21 N 1.31339 * 120.00352 * 198.45438 * 20 18 17 22 22 Si 1.86811 * 119.99722 * 18.45656 * 20 18 17 23 23 H 1.48500 * 109.47012 * 264.63452 * 22 20 18 24 24 H 1.48494 * 109.47221 * 24.63937 * 22 20 18 25 25 H 1.48493 * 109.46944 * 144.64053 * 22 20 18 26 26 C 1.38144 * 119.41841 * 0.23425 * 5 4 3 27 27 C 1.34765 * 119.73435 * 179.97438 * 2 1 3 28 28 O 1.22124 * 120.21177 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47056 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46837 * 119.99516 * 1 2 3 31 31 H 1.08995 * 109.47116 * 239.99122 * 1 2 3 32 32 H 1.08006 * 119.79087 * 180.02562 * 4 3 2 33 33 H 0.97003 * 120.00407 * 188.04223 * 6 5 4 34 34 H 1.07995 * 126.12655 * 359.97438 * 10 9 7 35 35 H 1.07997 * 120.08554 * 359.95716 * 12 11 10 36 36 H 1.07998 * 119.70089 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.68009 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.09371 * 179.97438 * 15 14 13 39 39 H 0.97001 * 119.99866 * 174.98787 * 21 20 18 40 40 H 1.08002 * 120.47982 * 179.73796 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1587 1.2146 0.0000 4 6 3.4620 1.2438 0.0005 5 6 4.2035 0.0433 0.0005 6 7 5.5906 0.0774 0.0005 7 6 6.2359 1.2493 0.1638 8 8 5.6078 2.2586 0.4232 9 6 7.6966 1.3081 0.0287 10 6 8.4694 2.4012 0.2785 11 6 9.8168 2.0448 0.0240 12 6 11.0272 2.7444 0.1021 13 6 12.1973 2.1151 -0.2146 14 6 12.1989 0.7854 -0.6148 15 6 11.0202 0.0759 -0.6994 16 6 9.8159 0.6952 -0.3820 17 7 8.5075 0.2619 -0.3690 18 6 8.0809 -0.9959 -0.7006 19 1 7.2150 -1.1231 -1.3332 20 6 8.7623 -2.1095 -0.2229 21 7 8.6026 -3.2764 -0.8041 22 14 9.9053 -1.9461 1.2457 23 1 11.2980 -1.7486 0.7694 24 1 9.4927 -0.7795 2.0667 25 1 9.8339 -3.1803 2.0682 26 6 3.5362 -1.1663 -0.0049 27 6 2.1334 -1.1702 0.0005 28 8 1.5218 -2.2273 0.0005 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5138 -0.8901 31 1 -0.3633 -0.5139 0.8899 32 1 3.9775 2.1929 0.0009 33 1 6.0959 -0.7422 -0.1170 34 1 8.1177 3.3679 0.6073 35 1 11.0356 3.7790 0.4118 36 1 13.1297 2.6565 -0.1532 37 1 13.1329 0.3023 -0.8614 38 1 11.0316 -0.9578 -1.0121 39 1 9.1320 -4.0372 -0.5180 40 1 4.0866 -2.0955 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536065811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:39 Heat of formation + Delta-G solvation = 64.757455 kcal Electronic energy + Delta-G solvation = -28511.936254 eV Core-core repulsion = 24487.029050 eV Total energy + Delta-G solvation = -4024.907204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.83766 -42.15260 -40.92255 -38.42058 -37.85200 -36.99506 -35.48519 -34.30484 -33.17943 -32.18404 -30.91028 -30.19622 -28.43087 -26.83956 -25.76386 -25.43026 -23.71703 -22.90864 -22.08875 -21.35935 -20.40065 -19.54922 -18.85297 -18.58901 -17.83682 -17.64905 -17.30551 -16.86854 -16.67380 -16.44063 -16.08482 -15.95329 -15.42844 -15.12838 -14.96342 -14.76981 -14.69503 -14.57532 -14.27625 -14.04871 -13.87102 -13.68710 -13.44340 -13.23243 -12.85968 -12.61600 -12.50098 -12.47529 -12.30387 -12.01770 -11.56433 -11.35474 -11.27094 -11.13570 -10.47204 -10.15429 -9.73174 -9.09702 -8.90911 -8.67413 -6.69101 -0.92163 -0.10866 0.56591 0.87625 1.04569 1.08577 1.16186 1.27091 1.33434 1.61510 1.96574 2.07615 2.25384 2.34183 2.68581 3.08985 3.13379 3.17768 3.55063 3.81486 4.00399 4.18887 4.29056 4.35667 4.41409 4.42943 4.55163 4.57255 4.65885 4.70759 4.77121 4.78842 4.87620 4.99631 5.11275 5.23961 5.26360 5.28595 5.61837 5.68871 5.80710 5.89506 5.98874 6.04117 6.34961 6.41790 6.60673 6.71801 6.76792 7.11725 8.13229 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.003654 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.729312 B = 7661.383780 C = 9034.849238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.426 5.426 3 N -0.199 5.199 4 C 0.058 3.942 5 C 0.209 3.791 6 N -0.648 5.648 7 C 0.607 3.393 8 O -0.518 6.518 9 C -0.049 4.049 10 C -0.131 4.131 11 C -0.146 4.146 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.107 4.107 15 C -0.145 4.145 16 C 0.051 3.949 17 N -0.295 5.295 18 C -0.390 4.390 19 H 0.108 0.892 20 C 0.068 3.932 21 N -0.846 5.846 22 Si 0.912 3.088 23 H -0.229 1.229 24 H -0.273 1.273 25 H -0.278 1.278 26 C -0.264 4.264 27 C 0.512 3.488 28 O -0.584 6.584 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.243 0.757 33 H 0.434 0.566 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.104 0.896 39 H 0.297 0.703 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 9.507 2.124 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.246 5.246 3 N -0.013 5.013 4 C -0.141 4.141 5 C 0.102 3.898 6 N -0.296 5.296 7 C 0.401 3.599 8 O -0.396 6.396 9 C -0.161 4.161 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.087 4.087 13 C -0.173 4.173 14 C -0.127 4.127 15 C -0.165 4.165 16 C -0.063 4.063 17 N 0.038 4.962 18 C -0.516 4.516 19 H 0.125 0.875 20 C -0.147 4.147 21 N -0.475 5.475 22 Si 0.735 3.265 23 H -0.152 1.152 24 H -0.197 1.197 25 H -0.204 1.204 26 C -0.299 4.299 27 C 0.310 3.690 28 O -0.467 6.467 29 H 0.137 0.863 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.258 0.742 33 H 0.283 0.717 34 H 0.186 0.814 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.172 9.512 2.197 10.001 hybrid contribution 1.154 -2.011 0.272 2.335 sum -1.017 7.501 2.469 7.962 Atomic orbital electron populations 1.22082 0.72907 1.05880 1.03926 1.49927 1.09774 1.02146 1.62730 1.75389 1.09299 1.06298 1.10323 1.25879 0.88848 1.01057 0.98303 1.19290 0.84471 0.94807 0.91248 1.44453 1.04422 1.13541 1.67210 1.17365 0.86028 0.82082 0.74467 1.90393 1.65749 1.34910 1.48597 1.20103 0.89951 0.92061 1.14018 1.20897 0.90480 0.98318 1.06135 1.18405 0.94840 0.93192 1.08636 1.20676 0.89848 1.00106 0.98050 1.20909 0.98817 0.94597 1.02939 1.21142 0.96537 0.95264 0.99726 1.20320 0.91009 0.99897 1.05281 1.18901 0.86210 0.94875 1.06300 1.40240 1.03625 1.08011 1.44317 1.19078 1.18724 0.79975 1.33827 0.87469 1.25862 0.96982 0.93988 0.97844 1.69656 1.37386 1.02136 1.38347 0.86298 0.82104 0.78127 0.80011 1.15220 1.19740 1.20435 1.22319 0.93669 0.98572 1.15302 1.17044 0.88659 0.83935 0.79329 1.90936 1.70353 1.30128 1.55243 0.86337 0.89984 0.90009 0.74198 0.71701 0.81395 0.83288 0.82747 0.83812 0.87786 0.89245 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.93 10.35 127.77 1.32 3.25 16 2 N -0.43 -12.61 3.91 -494.63 -1.93 -14.54 16 3 N -0.20 -5.70 11.50 -56.44 -0.65 -6.35 16 4 C 0.06 1.74 10.24 85.61 0.88 2.62 16 5 C 0.21 6.91 6.61 38.73 0.26 7.16 16 6 N -0.65 -23.06 5.15 -306.65 -1.58 -24.64 16 7 C 0.61 22.22 7.67 86.49 0.66 22.88 16 8 O -0.52 -18.02 13.34 -4.26 -0.06 -18.08 16 9 C -0.05 -1.95 6.76 39.90 0.27 -1.68 16 10 C -0.13 -4.67 10.55 22.64 0.24 -4.43 16 11 C -0.15 -5.32 6.16 -21.34 -0.13 -5.45 16 12 C -0.07 -1.95 10.06 22.31 0.22 -1.73 16 13 C -0.15 -4.02 9.97 22.03 0.22 -3.80 16 14 C -0.11 -3.22 10.02 22.32 0.22 -3.00 16 15 C -0.14 -5.57 6.88 22.38 0.15 -5.42 16 16 C 0.05 2.10 5.15 39.06 0.20 2.30 16 17 N -0.30 -12.84 2.38 -331.36 -0.79 -13.63 16 18 C -0.39 -18.01 8.01 84.09 0.67 -17.33 16 19 H 0.11 5.13 6.74 -2.91 -0.02 5.11 16 20 C 0.07 3.14 4.94 84.95 0.42 3.56 16 21 N -0.85 -40.89 13.95 21.67 0.30 -40.59 16 22 Si 0.91 38.05 24.39 68.60 1.67 39.72 16 23 H -0.23 -8.87 5.73 99.48 0.57 -8.30 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 26 C -0.26 -9.11 9.90 22.75 0.23 -8.89 16 27 C 0.51 18.12 7.48 84.74 0.63 18.75 16 28 O -0.58 -23.71 17.11 -5.72 -0.10 -23.81 16 29 H 0.12 1.80 8.09 -2.39 -0.02 1.78 16 30 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.24 7.00 4.77 -42.32 -0.20 6.80 16 33 H 0.43 16.63 4.83 -92.71 -0.45 16.18 16 34 H 0.17 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.10 4.24 6.04 -2.91 -0.02 4.22 16 39 H 0.30 13.26 8.31 -92.71 -0.77 12.49 16 40 H 0.16 5.47 8.06 -2.91 -0.02 5.45 16 Total: -1.00 -57.76 337.79 3.69 -54.07 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: 0.35 Total: 39.06 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 6.47 Total: 8.79 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -4.64 Total: -99.75 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.15 Total: -41.88 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.67 Total: 39.72 kcal Total: -57.76 3.69 -54.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536065811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.823 kcal (2) G-P(sol) polarization free energy of solvation -57.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds