Wall clock time and date at job start Tue Mar 31 2020 20:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34103 * 125.15253 * 2 1 4 4 C 1.38055 * 107.87453 * 179.72383 * 3 2 1 5 5 C 1.47201 * 126.81507 * 180.25238 * 4 3 2 6 6 O 1.21623 * 119.99846 * 180.15804 * 5 4 3 7 7 N 1.34773 * 120.00294 * 0.16499 * 5 4 3 8 8 C 1.39174 * 120.00317 * 174.39142 * 7 5 4 9 9 C 1.39706 * 119.57492 * 341.00872 * 8 7 5 10 10 C 1.38643 * 119.49135 * 179.74485 * 9 8 7 11 11 C 1.38353 * 118.67302 * 0.52074 * 10 9 8 12 12 C 1.40583 * 119.13497 * 359.74755 * 11 10 9 13 13 C 1.41328 * 119.78541 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00345 * 6.34089 * 13 12 11 15 15 C 1.40025 * 119.99893 * 186.34260 * 13 12 11 16 16 N 1.30745 * 119.99919 * 353.65103 * 15 13 12 17 17 Si 1.86800 * 120.00341 * 173.65322 * 15 13 12 18 18 H 1.48500 * 109.47039 * 94.97979 * 17 15 13 19 19 H 1.48493 * 109.47393 * 214.98608 * 17 15 13 20 20 H 1.48508 * 109.47036 * 334.98607 * 17 15 13 21 21 N 1.31913 * 119.58110 * 161.28287 * 8 7 5 22 22 C 1.46605 * 106.36563 * 0.39264 * 4 3 2 23 23 C 1.48315 * 126.51758 * 179.87227 * 22 4 3 24 24 C 1.46734 * 127.12163 * 144.70628 * 23 22 4 25 25 C 1.34353 * 106.02665 * 179.97438 * 24 23 22 26 26 O 1.34162 * 109.00302 * 359.97438 * 25 24 23 27 27 C 1.34085 * 110.75462 * 0.02562 * 26 25 24 28 28 N 1.31359 * 106.96622 * 359.60350 * 22 4 3 29 29 H 1.08998 * 109.47029 * 270.00193 * 1 2 3 30 30 H 1.09003 * 109.47114 * 29.99638 * 1 2 3 31 31 H 1.08999 * 109.47632 * 149.99924 * 1 2 3 32 32 H 1.07998 * 126.05891 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99809 * 354.39928 * 7 5 4 34 34 H 1.08000 * 120.25133 * 0.02693 * 9 8 7 35 35 H 1.08003 * 120.66364 * 180.25046 * 10 9 8 36 36 H 1.08006 * 120.43164 * 179.77107 * 11 10 9 37 37 H 0.97003 * 119.99950 * 179.97438 * 16 15 13 38 38 H 1.07999 * 126.98392 * 359.70405 * 24 23 22 39 39 H 1.08007 * 125.49929 * 180.02562 * 25 24 23 40 40 H 1.07994 * 125.77096 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2371 1.0965 0.0000 4 6 3.5554 0.6864 0.0063 5 6 4.7476 1.5497 0.0138 6 8 5.8579 1.0532 0.0160 7 7 4.6090 2.8903 0.0184 8 6 5.7301 3.7055 0.1432 9 6 6.9165 3.1729 0.6535 10 6 8.0338 3.9851 0.7721 11 6 7.9346 5.3107 0.3886 12 6 6.7109 5.7886 -0.1121 13 6 6.5941 7.1404 -0.5074 14 1 7.4669 7.7764 -0.5216 15 6 5.3466 7.6554 -0.8807 16 7 4.3148 6.8589 -0.9836 17 14 5.1564 9.4802 -1.2319 18 1 5.2962 9.7207 -2.6906 19 1 3.8161 9.9339 -0.7816 20 1 6.2059 10.2366 -0.5027 21 7 5.6572 4.9725 -0.2166 22 6 3.5321 -0.7794 0.0007 23 6 4.7099 -1.6809 0.0017 24 6 4.8302 -2.9800 0.6732 25 6 6.0663 -3.4276 0.3962 26 8 6.6951 -2.5263 -0.3734 27 6 5.9002 -1.4750 -0.6198 28 7 2.2697 -1.1427 0.0005 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.8893 2.1189 -0.0004 33 1 3.7277 3.2870 -0.0653 34 1 6.9643 2.1352 0.9489 35 1 8.9618 3.5921 1.1604 36 1 8.7862 5.9697 0.4724 37 1 3.4506 7.2157 -1.2418 38 1 4.0794 -3.4737 1.2722 39 1 6.4858 -4.3626 0.7374 40 1 6.1621 -0.6107 -1.2120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536674666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:03 Heat of formation + Delta-G solvation = 89.603713 kcal Electronic energy + Delta-G solvation = -27842.100942 eV Core-core repulsion = 23818.271152 eV Total energy + Delta-G solvation = -4023.829790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.27242 -42.19018 -41.01501 -39.30173 -36.02137 -35.14659 -35.00752 -33.06549 -32.31795 -31.99031 -30.63881 -30.53228 -27.85360 -27.26228 -24.99284 -23.50961 -23.30473 -22.97195 -22.10525 -21.04065 -20.50074 -19.36101 -19.24609 -18.24735 -17.75042 -17.13034 -16.89573 -16.64420 -16.53819 -16.32081 -16.05910 -15.96066 -15.29773 -15.19454 -14.71544 -14.55495 -14.18405 -13.95155 -13.78944 -13.73710 -13.64029 -13.39687 -13.06397 -12.89802 -12.84747 -12.61961 -12.54083 -12.02975 -11.83069 -11.54934 -11.25840 -11.00605 -10.59449 -10.26673 -9.94903 -9.81232 -9.61296 -9.26419 -8.91134 -8.28847 -6.47054 0.28523 0.44228 0.93988 1.12544 1.19311 1.34855 1.45056 1.54969 1.60079 1.85070 2.12307 2.21341 2.26884 2.42296 2.91796 3.23675 3.44487 3.89069 3.95345 4.02290 4.10733 4.16595 4.35425 4.40186 4.44343 4.54481 4.60437 4.69382 4.71478 4.91192 4.93713 4.98161 5.04089 5.20366 5.26635 5.29421 5.51094 5.66515 5.70619 5.81538 5.98428 6.11083 6.20042 6.30084 6.42272 6.59101 6.81202 6.98079 7.27928 8.12853 8.47809 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.003170 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.780562 B = 8829.794566 C =10673.184755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.355 5.355 3 C 0.132 3.868 4 C -0.315 4.315 5 C 0.596 3.404 6 O -0.547 6.547 7 N -0.638 5.638 8 C 0.353 3.647 9 C -0.324 4.324 10 C -0.048 4.048 11 C -0.309 4.309 12 C 0.247 3.753 13 C -0.467 4.467 14 H 0.089 0.911 15 C 0.028 3.972 16 N -0.751 5.751 17 Si 0.986 3.014 18 H -0.265 1.265 19 H -0.266 1.266 20 H -0.259 1.259 21 N -0.531 5.531 22 C 0.193 3.807 23 C -0.159 4.159 24 C -0.206 4.206 25 C -0.033 4.033 26 O -0.190 6.190 27 C 0.033 3.967 28 N -0.304 5.304 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.225 0.775 33 H 0.413 0.587 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.280 0.720 38 H 0.165 0.835 39 H 0.248 0.752 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.571 -13.492 1.614 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.133 5.133 3 C -0.020 4.020 4 C -0.330 4.330 5 C 0.387 3.613 6 O -0.426 6.426 7 N -0.282 5.282 8 C 0.117 3.883 9 C -0.348 4.348 10 C -0.073 4.073 11 C -0.332 4.332 12 C 0.120 3.880 13 C -0.499 4.499 14 H 0.107 0.893 15 C -0.194 4.194 16 N -0.373 5.373 17 Si 0.807 3.193 18 H -0.190 1.190 19 H -0.190 1.190 20 H -0.183 1.183 21 N -0.251 5.251 22 C 0.025 3.975 23 C -0.163 4.163 24 C -0.225 4.225 25 C -0.099 4.099 26 O -0.086 6.086 27 C -0.037 4.037 28 N -0.125 5.125 29 H 0.115 0.885 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.241 0.759 33 H 0.250 0.750 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.182 0.818 39 H 0.264 0.736 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.591 -14.593 1.158 18.672 hybrid contribution 0.678 1.438 0.243 1.608 sum -10.912 -13.155 1.401 17.150 Atomic orbital electron populations 1.22497 0.70336 1.06957 1.05649 1.48551 1.08752 1.02389 1.53613 1.23527 0.89270 0.95194 0.93983 1.21026 0.92717 0.92506 1.26736 1.17424 0.88418 0.80536 0.74969 1.90592 1.27015 1.74254 1.50782 1.42938 1.09251 1.05117 1.70940 1.18781 0.86721 0.89802 0.92975 1.21841 0.94504 1.02351 1.16115 1.21157 0.97630 0.93010 0.95496 1.21885 0.99541 0.96866 1.14879 1.18660 0.86723 0.93236 0.89365 1.19912 0.96123 0.94197 1.39661 0.89287 1.26902 0.94865 1.04550 0.93052 1.70180 1.00876 1.37799 1.28444 0.85137 0.78866 0.76164 0.79163 1.19022 1.19042 1.18259 1.68077 1.31967 1.01567 1.23478 1.20934 0.90673 0.89868 0.95999 1.19178 0.92885 0.96830 1.07384 1.22963 0.99282 0.94768 1.05522 1.24682 0.92446 0.96087 0.96666 1.83934 1.42211 1.26371 1.56054 1.24416 0.88507 0.90045 1.00767 1.77294 1.00987 1.07930 1.26322 0.88508 0.85762 0.88274 0.75877 0.74962 0.84776 0.85415 0.87077 0.90943 0.81779 0.73617 0.77943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 11.39 127.77 1.46 2.22 16 2 N -0.36 -7.34 3.95 -367.89 -1.45 -8.80 16 3 C 0.13 2.92 10.94 84.30 0.92 3.84 16 4 C -0.31 -9.86 6.31 -18.78 -0.12 -9.97 16 5 C 0.60 22.84 7.64 86.60 0.66 23.50 16 6 O -0.55 -23.55 9.84 -4.10 -0.04 -23.59 16 7 N -0.64 -25.78 5.39 -311.53 -1.68 -27.46 16 8 C 0.35 17.64 7.51 133.29 1.00 18.64 16 9 C -0.32 -16.02 8.83 22.72 0.20 -15.81 16 10 C -0.05 -2.31 10.15 22.39 0.23 -2.09 16 11 C -0.31 -15.79 9.83 22.87 0.22 -15.57 16 12 C 0.25 13.80 6.54 40.19 0.26 14.06 16 13 C -0.47 -25.11 9.13 23.46 0.21 -24.90 16 14 H 0.09 4.50 7.86 -2.91 -0.02 4.48 16 15 C 0.03 1.40 5.49 85.29 0.47 1.87 16 16 N -0.75 -38.15 11.49 21.84 0.25 -37.90 16 17 Si 0.99 36.85 29.56 68.60 2.03 38.88 16 18 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 N -0.53 -29.23 7.92 -186.40 -1.48 -30.70 16 22 C 0.19 6.17 7.34 44.08 0.32 6.50 16 23 C -0.16 -5.07 6.07 -18.93 -0.11 -5.19 16 24 C -0.21 -5.22 11.15 23.60 0.26 -4.96 16 25 C -0.03 -0.72 12.04 66.93 0.81 0.08 16 26 O -0.19 -5.41 10.55 0.96 0.01 -5.40 16 27 C 0.03 1.07 10.28 67.27 0.69 1.77 16 28 N -0.30 -8.59 12.50 -44.51 -0.56 -9.15 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.12 0.41 8.13 -2.39 -0.02 0.39 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.22 3.12 7.49 -2.91 -0.02 3.10 16 33 H 0.41 14.42 7.80 -92.71 -0.72 13.70 16 34 H 0.13 6.58 5.33 -3.14 -0.02 6.56 16 35 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 36 H 0.11 5.21 8.06 -2.91 -0.02 5.18 16 37 H 0.28 12.61 8.29 -92.71 -0.77 11.84 16 38 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.25 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.20 7.03 6.36 -2.91 -0.02 7.02 16 Total: -1.00 -76.53 352.95 4.97 -71.56 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.40 Total: 38.55 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 7.49 Total: -6.00 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -4.92 Total: -114.02 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.03 Total: -28.98 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Total: -76.53 4.97 -71.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536674666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.167 kcal (2) G-P(sol) polarization free energy of solvation -76.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds