Wall clock time and date at job start Tue Mar 31 2020 20:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36256 * 126.29859 * 2 1 4 4 N 1.30134 * 110.05124 * 179.85353 * 3 2 1 5 5 C 1.35706 * 109.49850 * 0.41910 * 4 3 2 6 6 C 1.39482 * 134.42943 * 179.68383 * 5 4 3 7 7 N 1.31765 * 120.63166 * 180.02562 * 6 5 4 8 8 C 1.31946 * 122.60599 * 359.97438 * 7 6 5 9 9 C 1.39392 * 121.01220 * 0.02562 * 8 7 6 10 10 C 1.47502 * 120.75329 * 179.97438 * 9 8 7 11 11 O 1.21600 * 120.00073 * 172.55821 * 10 9 8 12 12 N 1.34778 * 120.00386 * 352.56041 * 10 9 8 13 13 C 1.39844 * 120.00255 * 182.43106 * 12 10 9 14 14 C 1.38986 * 120.03573 * 218.10744 * 13 12 10 15 15 C 1.38154 * 120.06173 * 179.71696 * 14 13 12 16 16 C 1.38163 * 120.14400 * 0.55540 * 15 14 13 17 17 C 1.38915 * 120.07402 * 359.71729 * 16 15 14 18 18 O 1.35755 * 120.03301 * 179.97438 * 17 16 15 19 19 C 1.34828 * 116.99855 * 358.95146 * 18 17 16 20 20 H 1.07993 * 120.00187 * 359.66946 * 19 18 17 21 21 C 1.38655 * 119.99553 * 179.67279 * 19 18 17 22 22 N 1.31560 * 120.00016 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99864 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47180 * 89.99949 * 23 21 19 25 25 H 1.48496 * 109.47405 * 210.00410 * 23 21 19 26 26 H 1.48502 * 109.47135 * 330.00385 * 23 21 19 27 27 C 1.38731 * 120.03991 * 38.37788 * 13 12 10 28 28 C 1.36919 * 126.30013 * 180.31520 * 2 1 3 29 29 H 1.08997 * 109.46945 * 259.21524 * 1 2 3 30 30 H 1.08996 * 109.47376 * 139.21572 * 1 2 3 31 31 H 1.09000 * 109.47073 * 19.21674 * 1 2 3 32 32 H 1.08001 * 124.97859 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.68233 * 0.04404 * 6 5 4 34 34 H 1.07996 * 119.49581 * 179.97438 * 8 7 6 35 35 H 0.97006 * 119.99881 * 2.42032 * 12 10 9 36 36 H 1.08000 * 119.96436 * 359.97143 * 14 13 12 37 37 H 1.08001 * 119.92628 * 180.27539 * 15 14 13 38 38 H 1.07997 * 119.96657 * 179.74247 * 16 15 14 39 39 H 0.97004 * 119.99163 * 180.02562 * 22 21 19 40 40 H 1.07994 * 120.07222 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0981 0.0000 4 7 3.5210 0.7341 0.0031 5 6 3.5979 -0.6208 -0.0040 6 6 4.6478 -1.5391 -0.0103 7 7 4.4066 -2.8345 -0.0172 8 6 3.1838 -3.3301 -0.0181 9 6 2.0695 -2.4926 -0.0122 10 6 0.7050 -3.0528 -0.0138 11 8 -0.2539 -2.3185 0.1278 12 7 0.5208 -4.3785 -0.1721 13 6 -0.7743 -4.9033 -0.2245 14 6 -1.0556 -6.1234 0.3787 15 6 -2.3362 -6.6395 0.3322 16 6 -3.3385 -5.9507 -0.3234 17 6 -3.0626 -4.7334 -0.9332 18 8 -4.0480 -4.0575 -1.5776 19 6 -5.2667 -4.6333 -1.6074 20 1 -5.4225 -5.5925 -1.1362 21 6 -6.3201 -3.9939 -2.2430 22 7 -6.1305 -2.8252 -2.8166 23 14 -8.0086 -4.7919 -2.2850 24 1 -8.7894 -4.3611 -1.0976 25 1 -8.7202 -4.3800 -3.5215 26 1 -7.8584 -6.2692 -2.2692 27 6 -1.7787 -4.2093 -0.8835 28 6 2.2755 -1.1034 -0.0061 29 1 -0.3633 -0.1923 1.0095 30 1 -0.3634 -0.7781 -0.6712 31 1 -0.3633 0.9704 -0.3382 32 1 1.9249 2.1210 -0.0004 33 1 5.6681 -1.1850 -0.0091 34 1 3.0440 -4.4009 -0.0243 35 1 1.2868 -4.9687 -0.2497 36 1 -0.2731 -6.6665 0.8877 37 1 -2.5533 -7.5857 0.8055 38 1 -4.3377 -6.3588 -0.3615 39 1 -6.8676 -2.3778 -3.2609 40 1 -1.5619 -3.2629 -1.3565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001540997993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:29 Heat of formation + Delta-G solvation = 77.151008 kcal Electronic energy + Delta-G solvation = -27924.254193 eV Core-core repulsion = 23899.884413 eV Total energy + Delta-G solvation = -4024.369780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.72879 -40.31597 -38.92117 -38.50158 -36.68406 -34.47833 -34.20945 -32.33812 -32.02773 -30.36677 -29.52088 -28.46364 -27.27760 -25.45715 -24.97227 -23.17412 -22.93039 -21.84500 -21.17476 -20.21810 -18.55895 -18.05391 -17.65328 -17.54211 -17.06507 -16.35392 -15.75492 -15.50344 -15.24638 -15.14570 -14.93418 -14.74543 -14.26171 -14.11771 -13.86256 -13.77278 -13.62341 -12.99484 -12.86075 -12.64545 -12.49826 -12.34018 -11.80955 -11.55190 -11.25042 -11.06442 -10.88028 -10.85439 -10.64739 -10.50930 -10.33485 -9.83190 -9.59460 -9.29368 -9.17745 -8.88843 -8.59468 -7.83720 -7.28499 -6.49858 -4.08630 0.08994 1.10154 1.87511 2.23924 2.29493 2.36601 2.93311 2.99306 3.10055 3.11051 3.15238 3.63249 3.79620 3.91715 4.02704 4.13989 4.47496 4.53718 4.62914 4.72554 4.79704 5.06492 5.10954 5.22686 5.29085 5.43506 5.54064 5.70486 5.79711 5.81817 6.00101 6.06712 6.10573 6.18790 6.25641 6.58230 6.72927 6.79070 6.91637 6.97696 7.27120 7.34716 7.36859 7.49066 7.63587 7.67758 7.94772 8.15336 8.95509 9.64723 10.67984 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016578 B = 0.002840 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.583326 B = 9857.449014 C =11309.858980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.469 5.469 3 C 0.262 3.738 4 N -0.482 5.482 5 C -0.017 4.017 6 C 0.198 3.802 7 N -0.491 5.491 8 C 0.134 3.866 9 C -0.171 4.171 10 C 0.558 3.442 11 O -0.512 6.512 12 N -0.659 5.659 13 C 0.174 3.826 14 C -0.231 4.231 15 C -0.058 4.058 16 C -0.242 4.242 17 C 0.166 3.834 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.182 4.182 28 C 0.125 3.875 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.221 0.779 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.405 0.595 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.270 0.730 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.131 1.773 5.717 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.155 5.155 3 C -0.024 4.024 4 N -0.201 5.201 5 C -0.139 4.139 6 C 0.033 3.967 7 N -0.200 5.200 8 C -0.018 4.018 9 C -0.180 4.180 10 C 0.347 3.653 11 O -0.390 6.390 12 N -0.304 5.304 13 C 0.082 3.918 14 C -0.252 4.252 15 C -0.076 4.076 16 C -0.262 4.262 17 C 0.112 3.888 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.203 4.203 28 C 0.004 3.996 29 H 0.101 0.899 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.237 0.763 33 H 0.187 0.813 34 H 0.182 0.818 35 H 0.242 0.758 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.496 2.628 5.551 17.602 hybrid contribution -2.024 -0.559 0.031 2.100 sum 14.472 2.069 5.583 15.648 Atomic orbital electron populations 1.22788 0.73169 1.04581 1.06285 1.45395 1.09095 1.04617 1.56408 1.25658 0.84936 0.93788 0.97985 1.70489 1.18425 1.09737 1.21459 1.20178 0.92709 0.91769 1.09249 1.22306 0.98232 0.86204 0.89993 1.67684 1.23120 1.13920 1.15308 1.22715 0.86183 0.99600 0.93256 1.19861 0.95041 0.90439 1.12661 1.18095 0.88400 0.82216 0.76585 1.90800 1.42676 1.57078 1.48409 1.43277 1.07744 1.07534 1.71816 1.17088 0.83217 0.93941 0.97570 1.20312 0.97615 0.98247 1.09023 1.20528 0.92030 0.98210 0.96873 1.21204 1.00643 0.97752 1.06595 1.19075 0.88952 0.90302 0.90512 1.83977 1.17203 1.43233 1.63188 1.21355 0.83363 1.04878 1.37254 0.88904 1.25295 0.99434 0.95896 0.95856 1.70048 1.32712 1.13830 1.32954 0.85703 0.80305 0.79149 0.78231 1.19847 1.20235 1.19138 1.19916 0.90874 1.02817 1.06731 1.18694 0.91648 0.88706 1.00599 0.89933 0.85863 0.90331 0.76258 0.81257 0.81774 0.75841 0.87196 0.86898 0.85334 0.91986 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 9.28 59.84 0.56 1.41 16 2 N -0.47 -5.67 3.18 -122.87 -0.39 -6.07 16 3 C 0.26 2.64 12.49 -89.56 -1.12 1.52 16 4 N -0.48 -5.85 11.28 -12.00 -0.14 -5.99 16 5 C -0.02 -0.22 7.27 -84.73 -0.62 -0.84 16 6 C 0.20 2.13 11.25 -17.12 -0.19 1.94 16 7 N -0.49 -5.43 10.30 -12.64 -0.13 -5.56 16 8 C 0.13 1.42 10.70 -17.07 -0.18 1.24 16 9 C -0.17 -2.20 5.89 -104.86 -0.62 -2.81 16 10 C 0.56 8.26 7.50 -12.48 -0.09 8.17 16 11 O -0.51 -8.99 9.17 5.28 0.05 -8.95 16 12 N -0.66 -9.00 5.28 -10.83 -0.06 -9.06 16 13 C 0.17 3.05 6.19 -83.74 -0.52 2.53 16 14 C -0.23 -3.73 9.97 -39.34 -0.39 -4.13 16 15 C -0.06 -1.00 10.03 -39.64 -0.40 -1.40 16 16 C -0.24 -5.10 9.17 -39.36 -0.36 -5.46 16 17 C 0.17 3.98 6.65 -39.13 -0.26 3.72 16 18 O -0.17 -4.90 9.76 0.04 0.00 -4.90 16 19 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 20 H 0.09 2.34 5.18 -52.49 -0.27 2.07 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 23 Si 0.94 20.18 29.55 -169.99 -5.02 15.15 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 27 C -0.18 -3.91 8.59 -39.20 -0.34 -4.24 16 28 C 0.12 1.67 6.81 -83.81 -0.57 1.10 16 29 H 0.08 1.04 7.77 -51.93 -0.40 0.63 16 30 H 0.12 1.84 5.42 -52.97 -0.29 1.55 16 31 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.22 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.17 1.19 6.47 -52.49 -0.34 0.85 16 35 H 0.41 3.92 6.93 -40.82 -0.28 3.64 16 36 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.13 2.70 5.61 -52.49 -0.29 2.40 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.12 2.78 6.70 -52.49 -0.35 2.43 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -34.32 343.02 -8.14 -42.46 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.48 Total: 8.68 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -4.91 Total: -6.76 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.04 Total: -50.85 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.05 Total: -13.85 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.32 -8.14 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540997993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.612 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds