Wall clock time and date at job start Tue Mar 31 2020 20:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36256 * 126.29859 * 2 1 4 4 N 1.30134 * 110.05124 * 179.85353 * 3 2 1 5 5 C 1.35706 * 109.49850 * 0.41910 * 4 3 2 6 6 C 1.39482 * 134.42943 * 179.68383 * 5 4 3 7 7 N 1.31765 * 120.63166 * 180.02562 * 6 5 4 8 8 C 1.31946 * 122.60599 * 359.97438 * 7 6 5 9 9 C 1.39392 * 121.01220 * 0.02562 * 8 7 6 10 10 C 1.47502 * 120.75329 * 179.97438 * 9 8 7 11 11 O 1.21600 * 120.00073 * 172.55821 * 10 9 8 12 12 N 1.34778 * 120.00386 * 352.56041 * 10 9 8 13 13 C 1.39844 * 120.00255 * 182.43106 * 12 10 9 14 14 C 1.38986 * 120.03573 * 218.10744 * 13 12 10 15 15 C 1.38154 * 120.06173 * 179.71696 * 14 13 12 16 16 C 1.38163 * 120.14400 * 0.55540 * 15 14 13 17 17 C 1.38915 * 120.07402 * 359.71729 * 16 15 14 18 18 O 1.35755 * 120.03301 * 179.97438 * 17 16 15 19 19 C 1.34828 * 116.99855 * 358.95146 * 18 17 16 20 20 H 1.07993 * 120.00187 * 359.66946 * 19 18 17 21 21 C 1.38655 * 119.99553 * 179.67279 * 19 18 17 22 22 N 1.31560 * 120.00016 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99864 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47180 * 89.99949 * 23 21 19 25 25 H 1.48496 * 109.47405 * 210.00410 * 23 21 19 26 26 H 1.48502 * 109.47135 * 330.00385 * 23 21 19 27 27 C 1.38731 * 120.03991 * 38.37788 * 13 12 10 28 28 C 1.36919 * 126.30013 * 180.31520 * 2 1 3 29 29 H 1.08997 * 109.46945 * 259.21524 * 1 2 3 30 30 H 1.08996 * 109.47376 * 139.21572 * 1 2 3 31 31 H 1.09000 * 109.47073 * 19.21674 * 1 2 3 32 32 H 1.08001 * 124.97859 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.68233 * 0.04404 * 6 5 4 34 34 H 1.07996 * 119.49581 * 179.97438 * 8 7 6 35 35 H 0.97006 * 119.99881 * 2.42032 * 12 10 9 36 36 H 1.08000 * 119.96436 * 359.97143 * 14 13 12 37 37 H 1.08001 * 119.92628 * 180.27539 * 15 14 13 38 38 H 1.07997 * 119.96657 * 179.74247 * 16 15 14 39 39 H 0.97004 * 119.99163 * 180.02562 * 22 21 19 40 40 H 1.07994 * 120.07222 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0981 0.0000 4 7 3.5210 0.7341 0.0031 5 6 3.5979 -0.6208 -0.0040 6 6 4.6478 -1.5391 -0.0103 7 7 4.4066 -2.8345 -0.0172 8 6 3.1838 -3.3301 -0.0181 9 6 2.0695 -2.4926 -0.0122 10 6 0.7050 -3.0528 -0.0138 11 8 -0.2539 -2.3185 0.1278 12 7 0.5208 -4.3785 -0.1721 13 6 -0.7743 -4.9033 -0.2245 14 6 -1.0556 -6.1234 0.3787 15 6 -2.3362 -6.6395 0.3322 16 6 -3.3385 -5.9507 -0.3234 17 6 -3.0626 -4.7334 -0.9332 18 8 -4.0480 -4.0575 -1.5776 19 6 -5.2667 -4.6333 -1.6074 20 1 -5.4225 -5.5925 -1.1362 21 6 -6.3201 -3.9939 -2.2430 22 7 -6.1305 -2.8252 -2.8166 23 14 -8.0086 -4.7919 -2.2850 24 1 -8.7894 -4.3611 -1.0976 25 1 -8.7202 -4.3800 -3.5215 26 1 -7.8584 -6.2692 -2.2692 27 6 -1.7787 -4.2093 -0.8835 28 6 2.2755 -1.1034 -0.0061 29 1 -0.3633 -0.1923 1.0095 30 1 -0.3634 -0.7781 -0.6712 31 1 -0.3633 0.9704 -0.3382 32 1 1.9249 2.1210 -0.0004 33 1 5.6681 -1.1850 -0.0091 34 1 3.0440 -4.4009 -0.0243 35 1 1.2868 -4.9687 -0.2497 36 1 -0.2731 -6.6665 0.8877 37 1 -2.5533 -7.5857 0.8055 38 1 -4.3377 -6.3588 -0.3615 39 1 -6.8676 -2.3778 -3.2609 40 1 -1.5619 -3.2629 -1.3565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001540997993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:29 Heat of formation + Delta-G solvation = 53.825520 kcal Electronic energy + Delta-G solvation = -27925.265662 eV Core-core repulsion = 23899.884413 eV Total energy + Delta-G solvation = -4025.381249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.61781 -41.60136 -40.40628 -39.55087 -38.26828 -35.76436 -35.21113 -34.27642 -33.03484 -31.37730 -31.01363 -29.89345 -28.23687 -27.35707 -26.03217 -24.17048 -24.04905 -23.28535 -22.55577 -21.31599 -20.11072 -19.27575 -18.86691 -18.64727 -18.36907 -17.35497 -17.10079 -16.76390 -16.59853 -16.32628 -16.18670 -15.90565 -15.76277 -15.49076 -15.48580 -14.79027 -14.70108 -14.48314 -14.26494 -13.74122 -13.62085 -13.47065 -13.41598 -13.09692 -12.87281 -12.64488 -12.37268 -12.13293 -11.80861 -11.69393 -11.41720 -11.24590 -11.12223 -10.77291 -10.53906 -10.09619 -9.52047 -9.36355 -8.90912 -8.47788 -6.16269 -0.80949 0.17343 0.42482 0.69478 1.29524 1.34731 1.44525 1.49794 1.52523 1.82153 1.89266 2.17803 2.70299 2.82526 2.97399 3.10925 3.18693 3.33466 3.46522 3.66514 3.76749 3.85496 4.02876 4.11323 4.26425 4.35152 4.37970 4.41058 4.49377 4.62571 4.71316 4.82850 4.94924 5.05402 5.11212 5.18688 5.27122 5.39320 5.42020 5.62492 5.72465 5.90299 6.01839 6.16603 6.31012 6.48694 6.76699 6.96616 7.01678 7.77702 8.75739 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016578 B = 0.002840 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.583326 B = 9857.449014 C =11309.858980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.478 5.478 3 C 0.270 3.730 4 N -0.500 5.500 5 C -0.033 4.033 6 C 0.206 3.794 7 N -0.496 5.496 8 C 0.150 3.850 9 C -0.191 4.191 10 C 0.556 3.444 11 O -0.545 6.545 12 N -0.646 5.646 13 C 0.184 3.816 14 C -0.201 4.201 15 C -0.049 4.049 16 C -0.253 4.253 17 C 0.128 3.872 18 O -0.233 6.233 19 C -0.413 4.413 20 H 0.106 0.894 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.250 1.250 27 C -0.203 4.203 28 C 0.098 3.902 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.264 0.736 33 H 0.198 0.802 34 H 0.200 0.800 35 H 0.428 0.572 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.272 0.728 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.371 -0.519 7.434 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.165 5.165 3 C -0.015 4.015 4 N -0.220 5.220 5 C -0.155 4.155 6 C 0.041 3.959 7 N -0.206 5.206 8 C -0.002 4.002 9 C -0.200 4.200 10 C 0.346 3.654 11 O -0.424 6.424 12 N -0.293 5.293 13 C 0.090 3.910 14 C -0.221 4.221 15 C -0.068 4.068 16 C -0.273 4.273 17 C 0.077 3.923 18 O -0.139 6.139 19 C -0.489 4.489 20 H 0.123 0.877 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.173 1.173 27 C -0.224 4.224 28 C -0.023 4.023 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.279 0.721 33 H 0.215 0.785 34 H 0.216 0.784 35 H 0.269 0.731 36 H 0.181 0.819 37 H 0.176 0.824 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.841 0.289 7.298 20.207 hybrid contribution -2.318 0.109 -0.355 2.347 sum 16.524 0.398 6.943 17.927 Atomic orbital electron populations 1.22546 0.73508 1.05101 1.04667 1.45535 1.09019 1.05103 1.56809 1.26556 0.84182 0.94862 0.95894 1.70498 1.19375 1.09549 1.22537 1.20488 0.92747 0.92280 1.09944 1.22814 0.99128 0.85959 0.88024 1.67827 1.22999 1.13976 1.15790 1.23237 0.85286 1.00870 0.90774 1.19785 0.94309 0.90663 1.15206 1.18499 0.88991 0.82191 0.75732 1.90835 1.44022 1.57924 1.49660 1.43129 1.07026 1.07672 1.71449 1.17198 0.83832 0.94012 0.95922 1.20930 0.98422 0.96795 1.05937 1.21038 0.91316 0.99218 0.95190 1.21352 1.01743 0.97058 1.07136 1.19611 0.89083 0.91861 0.91773 1.83945 1.18300 1.45416 1.66240 1.21885 0.83811 1.05579 1.37617 0.87658 1.26625 1.03874 0.96451 0.95205 1.70207 1.34219 1.16154 1.35469 0.84570 0.74259 0.78814 0.78470 1.18885 1.19736 1.17292 1.19962 0.91533 1.02649 1.08270 1.19124 0.92542 0.89416 1.01206 0.91228 0.89297 0.87128 0.72077 0.78517 0.78364 0.73142 0.81876 0.82355 0.85905 0.91913 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.06 9.28 127.77 1.19 3.24 16 2 N -0.48 -11.61 3.18 -542.66 -1.73 -13.34 16 3 C 0.27 5.12 12.49 179.98 2.25 7.36 16 4 N -0.50 -11.54 11.28 -191.89 -2.16 -13.71 16 5 C -0.03 -0.80 7.27 39.46 0.29 -0.52 16 6 C 0.21 4.00 11.25 85.00 0.96 4.96 16 7 N -0.50 -9.68 10.30 -193.90 -2.00 -11.68 16 8 C 0.15 2.79 10.70 84.95 0.91 3.70 16 9 C -0.19 -4.74 5.89 -20.02 -0.12 -4.86 16 10 C 0.56 16.41 7.50 86.69 0.65 17.07 16 11 O -0.55 -20.20 9.17 -4.03 -0.04 -20.23 16 12 N -0.65 -16.38 5.28 -306.43 -1.62 -18.00 16 13 C 0.18 6.16 6.19 38.16 0.24 6.40 16 14 C -0.20 -5.58 9.97 22.43 0.22 -5.36 16 15 C -0.05 -1.53 10.03 22.23 0.22 -1.31 16 16 C -0.25 -10.66 9.17 22.41 0.21 -10.45 16 17 C 0.13 6.45 6.65 22.56 0.15 6.60 16 18 O -0.23 -14.25 9.76 -22.77 -0.22 -14.47 16 19 C -0.41 -24.08 9.49 67.92 0.64 -23.43 16 20 H 0.11 5.55 5.18 -2.91 -0.02 5.54 16 21 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 22 N -0.92 -57.11 13.67 21.61 0.30 -56.82 16 23 Si 1.02 42.68 29.55 68.60 2.03 44.71 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 27 C -0.20 -9.10 8.59 22.52 0.19 -8.91 16 28 C 0.10 2.62 6.81 39.50 0.27 2.89 16 29 H 0.07 1.88 7.77 -2.39 -0.02 1.86 16 30 H 0.09 2.92 5.42 -18.82 -0.10 2.82 16 31 H 0.11 1.94 8.11 -2.39 -0.02 1.92 16 32 H 0.26 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.20 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.20 2.05 6.47 -2.91 -0.02 2.03 16 35 H 0.43 6.65 6.93 -92.70 -0.64 6.01 16 36 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.12 5.22 5.61 -2.91 -0.02 5.20 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.10 4.82 6.70 -2.91 -0.02 4.80 16 Total: -1.00 -83.81 343.02 3.69 -80.12 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.40 Total: 26.95 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 8.73 Total: -3.54 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -7.21 Total: -113.54 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.26 Total: -34.71 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -83.81 3.69 -80.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540997993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.946 kcal (2) G-P(sol) polarization free energy of solvation -83.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds