Wall clock time and date at job start Tue Mar 31 2020 21:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35679 * 117.00135 * 2 1 4 4 C 1.38704 * 120.13301 * 0.02906 * 3 2 1 5 5 C 1.38053 * 120.09663 * 179.97438 * 4 3 2 6 6 C 1.38639 * 120.37927 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 119.86400 * 180.02562 * 6 5 4 8 8 C 1.37895 * 120.27514 * 359.76141 * 6 5 4 9 9 C 1.39714 * 119.88943 * 0.51417 * 8 6 5 10 10 C 1.47536 * 120.18350 * 179.74263 * 9 8 6 11 11 O 1.21592 * 120.00173 * 179.72397 * 10 9 8 12 12 N 1.34777 * 120.00030 * 359.72679 * 10 9 8 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47035 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47369 * 64.99599 * 14 13 12 16 16 N 1.46501 * 109.46932 * 304.99709 * 14 13 12 17 17 C 1.36940 * 119.99958 * 154.99652 * 16 14 13 18 18 H 1.08000 * 119.99617 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99883 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00182 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99665 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46938 * 60.00589 * 21 19 17 23 23 H 1.48506 * 109.46909 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47358 * 300.00570 * 21 19 17 25 25 C 1.52999 * 109.46954 * 184.99888 * 14 13 12 26 26 C 1.53001 * 117.49597 * 248.74464 * 25 14 13 27 27 C 1.53001 * 117.49395 * 180.08482 * 25 14 13 28 28 H 1.09002 * 109.46870 * 299.99258 * 1 2 3 29 29 H 1.08998 * 109.47436 * 59.99688 * 1 2 3 30 30 H 1.09007 * 109.46758 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.95142 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.81110 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.06105 * 180.25426 * 8 6 5 34 34 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 36 36 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 37 37 H 0.96998 * 120.00221 * 335.00050 * 16 14 13 38 38 H 0.96996 * 120.00088 * 179.97438 * 20 19 17 39 39 H 1.08995 * 115.55198 * 34.41570 * 25 14 13 40 40 H 1.08998 * 117.49706 * 359.97438 * 26 25 14 41 41 H 1.08998 * 117.50025 * 145.02616 * 26 25 14 42 42 H 1.09002 * 117.49660 * 214.97547 * 27 25 14 43 43 H 1.08995 * 117.50108 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2923 2.3739 0.0006 5 6 1.9198 3.6036 0.0011 6 6 3.3038 3.6844 0.0016 7 17 4.0791 5.2377 0.0030 8 6 4.0673 2.5361 0.0065 9 6 3.4441 1.2857 0.0001 10 6 4.2546 0.0529 -0.0004 11 8 3.7087 -1.0336 -0.0009 12 7 5.6001 0.1310 -0.0003 13 6 6.4049 -1.0932 -0.0014 14 6 7.8904 -0.7269 -0.0017 15 1 8.1396 -0.2187 0.9298 16 7 8.1744 0.1600 -1.1327 17 6 9.2421 1.0158 -1.0804 18 1 9.8750 1.0368 -0.2055 19 6 9.5115 1.8557 -2.1523 20 7 8.7405 1.8298 -3.2187 21 14 10.9684 3.0227 -2.0812 22 1 12.2204 2.2418 -1.9138 23 1 11.0382 3.8047 -3.3417 24 1 10.8053 3.9487 -0.9319 25 6 8.7296 -1.9999 -0.1286 26 6 9.5551 -2.4258 1.0871 27 6 10.2515 -1.8439 -0.1456 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 0.2136 2.3190 0.0007 32 1 1.3292 4.5078 0.0012 33 1 5.1451 2.6031 0.0110 34 1 6.0356 0.9978 -0.0003 35 1 6.1752 -1.6798 0.8881 36 1 6.1751 -1.6783 -0.8919 37 1 7.6062 0.1409 -1.9186 38 1 8.9286 2.4170 -3.9675 39 1 8.2975 -2.7883 -0.7448 40 1 9.5007 -1.7989 1.9771 41 1 9.6665 -3.4945 1.2705 42 1 10.8207 -2.5301 -0.7728 43 1 10.6549 -0.8344 -0.0669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566728791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:14 Heat of formation + Delta-G solvation = -30.926751 kcal Electronic energy + Delta-G solvation = -26846.673055 eV Core-core repulsion = 22918.724166 eV Total energy + Delta-G solvation = -3927.948889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68864 -40.17233 -38.93297 -38.67952 -37.13984 -36.07491 -35.14074 -33.13155 -32.23685 -31.01916 -29.64509 -28.12160 -25.93721 -25.03165 -23.74166 -23.04811 -22.95807 -21.63008 -21.00271 -19.73392 -19.09607 -18.25685 -17.71053 -16.93659 -16.76672 -16.60371 -16.53741 -16.08997 -15.97404 -15.81430 -15.31418 -15.04961 -14.88452 -14.76963 -14.33194 -14.19866 -13.65795 -13.54557 -13.03845 -12.95337 -12.89901 -12.77330 -12.64832 -12.41783 -12.30034 -12.23680 -12.01839 -11.98833 -11.70725 -11.66329 -11.06575 -10.97927 -10.81571 -10.72579 -10.33393 -9.98223 -9.23147 -8.97935 -7.86203 -5.13927 -0.32562 0.09050 1.11938 1.51031 1.51638 1.57095 1.77264 2.19397 2.27598 2.59465 2.64484 3.09327 3.48777 3.55622 3.61325 3.80656 3.89192 4.00640 4.06875 4.18836 4.29944 4.34671 4.36572 4.40797 4.42206 4.53973 4.61184 4.64412 4.70007 4.77142 4.87078 4.91490 5.01572 5.06053 5.17144 5.17277 5.37650 5.41753 5.47826 5.53447 5.63595 6.30769 6.32763 6.57835 7.22979 7.41387 8.11931 8.37981 9.36255 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.003949 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.598491 B = 7087.997258 C = 9446.023851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.309 6.309 3 C 0.179 3.821 4 C -0.197 4.197 5 C -0.032 4.032 6 C -0.091 4.091 7 Cl -0.066 7.066 8 C -0.040 4.040 9 C -0.184 4.184 10 C 0.555 3.445 11 O -0.563 6.563 12 N -0.710 5.710 13 C 0.130 3.870 14 C 0.197 3.803 15 H 0.058 0.942 16 N -0.723 5.723 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.066 4.066 20 N -0.965 5.965 21 Si 0.957 3.043 22 H -0.283 1.283 23 H -0.303 1.303 24 H -0.278 1.278 25 C -0.173 4.173 26 C -0.161 4.161 27 C -0.173 4.173 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.182 0.818 32 H 0.174 0.826 33 H 0.137 0.863 34 H 0.407 0.593 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.372 0.628 38 H 0.247 0.753 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.708 1.049 10.039 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.220 6.220 3 C 0.130 3.870 4 C -0.215 4.215 5 C -0.050 4.050 6 C -0.118 4.118 7 Cl -0.037 7.037 8 C -0.059 4.059 9 C -0.188 4.188 10 C 0.343 3.657 11 O -0.443 6.443 12 N -0.362 5.362 13 C 0.005 3.995 14 C 0.088 3.912 15 H 0.076 0.924 16 N -0.363 5.363 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.258 4.258 20 N -0.616 5.616 21 Si 0.787 3.213 22 H -0.209 1.209 23 H -0.230 1.230 24 H -0.205 1.205 25 C -0.194 4.194 26 C -0.199 4.199 27 C -0.210 4.210 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.199 0.801 32 H 0.191 0.809 33 H 0.154 0.846 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.204 0.796 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.779 0.299 10.108 19.591 hybrid contribution 1.163 1.192 -0.885 1.886 sum -15.616 1.491 9.223 18.198 Atomic orbital electron populations 1.23537 0.76089 1.05815 1.03124 1.86374 1.23633 1.25718 1.86297 1.19302 0.90561 0.86150 0.90997 1.21524 1.02140 0.89747 1.08103 1.21375 0.91466 0.99520 0.92681 1.20750 0.93816 0.86464 1.10726 1.98383 1.81409 1.26702 1.97218 1.21113 1.00565 0.89787 0.94460 1.19262 0.91866 0.92985 1.14682 1.18214 0.82282 0.88766 0.76448 1.90752 1.72301 1.29688 1.51565 1.45895 1.05412 1.10962 1.73887 1.21493 0.90101 0.86250 1.01638 1.20151 0.90389 0.89234 0.91411 0.92433 1.42550 1.33034 1.43315 1.17359 1.19406 1.04105 1.11505 1.00187 0.90539 1.25319 1.01449 1.02374 0.96696 1.69797 1.41593 1.42984 1.07192 0.85466 0.80331 0.79313 0.76179 1.20944 1.22974 1.20465 1.22908 0.94172 0.99898 1.02465 1.23035 1.03444 1.01564 0.91855 1.22730 0.94962 1.01703 1.01633 0.90284 0.90674 0.87054 0.80120 0.80878 0.84575 0.75562 0.90127 0.93043 0.79569 0.94414 0.88840 0.88589 0.87503 0.89618 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.31 -8.38 8.57 -69.04 -0.59 -8.98 16 3 C 0.18 4.70 6.70 22.84 0.15 4.86 16 4 C -0.20 -3.47 9.03 22.34 0.20 -3.27 16 5 C -0.03 -0.56 9.81 22.32 0.22 -0.35 16 6 C -0.09 -2.18 6.31 22.28 0.14 -2.04 16 7 Cl -0.07 -1.59 28.94 -2.72 -0.08 -1.67 16 8 C -0.04 -1.14 9.31 22.55 0.21 -0.93 16 9 C -0.18 -5.74 5.89 -20.01 -0.12 -5.86 16 10 C 0.55 20.42 7.76 86.70 0.67 21.09 16 11 O -0.56 -23.59 15.16 16.92 0.26 -23.33 16 12 N -0.71 -25.26 5.34 -466.24 -2.49 -27.75 16 13 C 0.13 4.54 5.22 86.38 0.45 4.99 16 14 C 0.20 7.29 2.70 44.99 0.12 7.41 16 15 H 0.06 2.11 7.84 -2.39 -0.02 2.10 16 16 N -0.72 -33.43 4.54 -322.93 -1.47 -34.90 16 17 C -0.22 -11.20 8.63 84.03 0.73 -10.48 16 18 H 0.08 3.75 6.91 -2.91 -0.02 3.73 16 19 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 20 N -0.96 -56.92 13.06 21.65 0.28 -56.64 16 21 Si 0.96 44.76 29.55 68.60 2.03 46.78 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.17 -5.86 5.36 -10.79 -0.06 -5.92 16 26 C -0.16 -4.48 10.18 30.62 0.31 -4.17 16 27 C -0.17 -5.95 9.78 30.62 0.30 -5.65 16 28 H 0.08 0.75 7.66 -2.39 -0.02 0.73 16 29 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 30 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.18 1.70 6.30 -2.91 -0.02 1.68 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.14 4.13 6.40 -2.91 -0.02 4.11 16 34 H 0.41 14.60 6.17 -92.71 -0.57 14.03 16 35 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.37 19.24 7.80 -92.71 -0.72 18.52 16 38 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 39 H 0.09 3.12 8.11 -2.39 -0.02 3.11 16 40 H 0.10 2.51 8.05 -2.39 -0.02 2.49 16 41 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.08 3.18 6.23 -2.39 -0.01 3.16 16 Total: -1.00 -68.25 374.66 2.62 -65.63 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.23 Total: 43.05 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.91 Total: -2.20 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -3.67 Total: -119.29 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.34 Total: -32.31 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -68.25 2.62 -65.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566728791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.705 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds