Wall clock time and date at job start Tue Mar 31 2020 20:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47387 * 2 1 4 4 C 1.36934 * 119.99541 * 275.30816 * 3 2 1 5 5 H 1.07999 * 120.00249 * 37.58082 * 4 3 2 6 6 C 1.38819 * 119.99742 * 217.57550 * 4 3 2 7 7 N 1.31619 * 120.00140 * 21.43054 * 6 4 3 8 8 Si 1.86805 * 119.99803 * 201.42800 * 6 4 3 9 9 H 1.48499 * 109.46951 * 90.00507 * 8 6 4 10 10 H 1.48502 * 109.46685 * 210.00072 * 8 6 4 11 11 H 1.48497 * 109.47367 * 330.00073 * 8 6 4 12 12 C 1.46501 * 120.00073 * 95.31054 * 3 2 1 13 13 C 1.52998 * 109.46751 * 270.00068 * 12 3 2 14 14 N 1.46498 * 109.47165 * 180.02562 * 13 12 3 15 15 C 1.34771 * 120.00353 * 179.72663 * 14 13 12 16 16 O 1.21279 * 119.99998 * 0.26660 * 15 14 13 17 17 C 1.50693 * 120.00345 * 180.27406 * 15 14 13 18 18 H 1.09008 * 110.66632 * 55.69637 * 17 15 14 19 19 C 1.54717 * 110.74895 * 292.48367 * 17 15 14 20 20 C 1.51640 * 101.91132 * 267.03684 * 19 17 15 21 21 C 1.37740 * 132.17016 * 164.30027 * 20 19 17 22 22 C 1.38447 * 119.97248 * 180.33086 * 21 20 19 23 23 Cl 1.73596 * 120.13380 * 180.02562 * 22 21 20 24 24 C 1.38393 * 119.73907 * 359.97438 * 22 21 20 25 25 C 1.37927 * 120.33638 * 359.84997 * 24 22 21 26 26 C 1.38878 * 107.03557 * 344.32082 * 20 19 17 27 27 O 1.36615 * 111.30579 * 359.32906 * 26 20 19 28 28 H 1.09003 * 109.47295 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47334 * 300.00592 * 1 2 3 30 30 H 1.09001 * 109.46964 * 59.99922 * 1 2 3 31 31 H 1.09003 * 109.47334 * 239.99408 * 2 1 3 32 32 H 1.09001 * 109.46964 * 120.00078 * 2 1 3 33 33 H 0.96994 * 120.00046 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46652 * 150.00233 * 12 3 2 35 35 H 1.08998 * 109.47051 * 29.99495 * 12 3 2 36 36 H 1.08998 * 109.47526 * 59.99683 * 13 12 3 37 37 H 1.09003 * 109.47121 * 299.99944 * 13 12 3 38 38 H 0.97004 * 119.99888 * 359.97438 * 14 13 12 39 39 H 1.08994 * 110.93588 * 25.19098 * 19 17 15 40 40 H 1.08998 * 110.94322 * 148.87890 * 19 17 15 41 41 H 1.07994 * 120.01631 * 0.31984 * 21 20 19 42 42 H 1.07996 * 119.83224 * 179.83055 * 24 22 21 43 43 H 1.08001 * 119.87580 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6491 8 14 3.0995 4.2793 -2.6586 9 1 2.5378 5.5068 -2.0396 10 1 4.4551 4.5693 -3.1910 11 1 2.2168 3.8356 -3.7673 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7382 1.8365 14 7 1.4976 3.3902 3.0994 15 6 0.5666 4.0820 3.7857 16 8 -0.5664 4.1608 3.3602 17 6 0.9332 4.7579 5.0817 18 1 1.7735 5.4371 4.9371 19 6 1.2568 3.7106 6.1736 20 6 -0.0879 3.5424 6.8541 21 6 -0.5776 2.5797 7.7090 22 6 -1.8744 2.6723 8.1848 23 17 -2.4957 1.4618 9.2628 24 6 -2.6732 3.7344 7.7984 25 6 -2.1826 4.7008 6.9454 26 6 -0.8783 4.6156 6.4643 27 8 -0.1975 5.4562 5.6298 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.0492 3.4025 -0.7835 34 1 3.1617 2.7641 1.0858 35 1 2.7254 1.2833 1.9721 36 1 0.3541 2.0069 2.0138 37 1 0.7904 3.4876 1.1276 38 1 2.4037 3.3271 3.4400 39 1 1.5879 2.7728 5.7279 40 1 2.0016 4.0929 6.8716 41 1 0.0496 1.7529 8.0078 42 1 -3.6859 3.8066 8.1665 43 1 -2.8126 5.5262 6.6484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567338567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:50 Heat of formation + Delta-G solvation = -28.273866 kcal Electronic energy + Delta-G solvation = -26668.065731 eV Core-core repulsion = 22740.231880 eV Total energy + Delta-G solvation = -3927.833851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68511 -39.12507 -37.81517 -36.44553 -36.26241 -34.28581 -33.05572 -31.93641 -30.42167 -30.13597 -29.29792 -27.50243 -24.93149 -24.05140 -22.79204 -22.08541 -21.79108 -20.58165 -20.18970 -18.07039 -17.37148 -17.15174 -16.61043 -16.46141 -15.46017 -15.17894 -15.14387 -14.59897 -14.38443 -14.04903 -13.94600 -13.71203 -13.56054 -13.48937 -13.17781 -12.74582 -12.62902 -12.50150 -12.43290 -12.15918 -11.89310 -11.61609 -11.55778 -11.19210 -11.16149 -10.99043 -10.82111 -10.71162 -10.54447 -10.13911 -9.94723 -9.88850 -9.60289 -9.28539 -8.68632 -8.53538 -8.31395 -6.68649 -5.89317 -3.48030 0.83884 0.93508 1.85676 2.60205 2.84480 3.30813 3.32140 3.39433 3.39700 3.42715 4.01665 4.18577 4.41344 4.47938 4.67385 4.79102 4.84063 4.91643 5.21283 5.22376 5.27180 5.34256 5.48444 5.55450 5.68919 5.88628 5.93289 6.00600 6.02779 6.09489 6.10737 6.33649 6.35581 6.44253 6.63473 6.72023 6.77139 6.87192 6.93752 7.11935 7.45597 7.73475 7.75834 8.37239 8.43185 9.09006 9.70625 10.28510 11.10892 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002579 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.400568 B =10852.792498 C =11708.801466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.713 5.713 15 C 0.490 3.510 16 O -0.526 6.526 17 C 0.061 3.939 18 H 0.144 0.856 19 C -0.097 4.097 20 C -0.162 4.162 21 C -0.058 4.058 22 C -0.066 4.066 23 Cl -0.069 7.069 24 C -0.074 4.074 25 C -0.121 4.121 26 C 0.122 3.878 27 O -0.271 6.271 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.255 0.745 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 0.959 19.972 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.366 5.366 15 C 0.273 3.727 16 O -0.402 6.402 17 C 0.001 3.999 18 H 0.162 0.838 19 C -0.135 4.135 20 C -0.164 4.164 21 C -0.077 4.077 22 C -0.093 4.093 23 Cl -0.040 7.040 24 C -0.093 4.093 25 C -0.140 4.140 26 C 0.077 3.923 27 O -0.183 6.183 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.168 1.192 19.625 20.927 hybrid contribution 0.389 0.567 -0.469 0.833 sum -6.778 1.759 19.156 20.396 Atomic orbital electron populations 1.22389 0.99886 0.99133 1.01386 1.20883 0.91760 0.86920 0.98931 1.43616 1.76012 1.08311 1.02066 1.19042 1.04801 1.21245 0.93960 0.92022 1.25189 0.94127 1.01199 0.98165 1.69989 1.03145 1.37263 1.42587 0.86379 0.76968 0.82524 0.81478 1.21191 1.21660 1.20131 1.21057 0.94452 0.96955 0.86489 1.22544 1.01300 0.96570 0.82382 1.46082 1.12983 1.52737 1.24751 1.20691 0.86219 0.79878 0.85902 1.90736 1.20243 1.60138 1.69043 1.23427 0.88888 0.95198 0.92351 0.83818 1.21799 0.95186 1.00245 0.96231 1.20593 0.96249 0.97503 1.02007 1.20070 0.93767 0.98127 0.95689 1.20597 0.94933 0.93875 0.99879 1.98363 1.87238 1.55181 1.63259 1.20750 0.99888 0.92096 0.96534 1.20204 0.92041 1.01301 1.00460 1.19734 0.92459 0.89530 0.90623 1.87077 1.39416 1.33919 1.57843 0.94402 0.93731 0.93084 0.93512 0.94728 0.93488 0.88331 0.95263 0.92880 0.91606 0.76828 0.87920 0.87472 0.84561 0.84053 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 10.21 37.16 0.38 -2.71 16 2 C 0.14 2.89 6.44 -4.04 -0.03 2.87 16 3 N -0.58 -13.73 2.43 -173.24 -0.42 -14.15 16 4 C -0.26 -6.87 9.45 -15.06 -0.14 -7.02 16 5 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -24.12 11.47 55.49 0.64 -23.49 16 8 Si 0.90 21.08 29.61 -169.99 -5.03 16.05 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 C 0.14 2.94 5.45 -4.04 -0.02 2.91 16 13 C 0.10 1.89 6.00 -4.04 -0.02 1.87 16 14 N -0.71 -10.98 5.48 -60.30 -0.33 -11.31 16 15 C 0.49 7.86 7.05 -10.99 -0.08 7.78 16 16 O -0.53 -10.95 16.50 -13.51 -0.22 -11.18 16 17 C 0.06 0.72 4.10 -26.98 -0.11 0.61 16 18 H 0.14 1.21 8.14 -51.92 -0.42 0.79 16 19 C -0.10 -0.89 6.64 -26.52 -0.18 -1.06 16 20 C -0.16 -1.84 6.26 -104.10 -0.65 -2.49 16 21 C -0.06 -0.60 9.82 -39.69 -0.39 -0.99 16 22 C -0.07 -0.68 6.33 -39.45 -0.25 -0.93 16 23 Cl -0.07 -0.65 28.97 -51.86 -1.50 -2.15 16 24 C -0.07 -0.73 9.81 -39.64 -0.39 -1.12 16 25 C -0.12 -1.37 10.06 -39.31 -0.40 -1.76 16 26 C 0.12 1.58 6.88 -38.96 -0.27 1.31 16 27 O -0.27 -3.78 10.45 -40.80 -0.43 -4.20 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.83 6.64 -51.93 -0.34 0.48 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.10 2.35 5.52 -51.93 -0.29 2.06 16 35 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 36 H 0.05 1.07 6.64 -51.93 -0.34 0.73 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.40 4.83 8.47 -40.82 -0.35 4.49 16 39 H 0.10 0.87 7.85 -51.93 -0.41 0.46 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 43 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -31.98 375.68 -10.16 -42.14 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.90 Total: 3.09 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.63 Total: -0.46 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.12 Total: -48.95 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.65 Total: -15.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.98 -10.16 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567338567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.867 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds