Wall clock time and date at job start Tue Mar 31 2020 20:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47387 * 2 1 4 4 C 1.36934 * 119.99541 * 275.30816 * 3 2 1 5 5 H 1.07999 * 120.00249 * 37.58082 * 4 3 2 6 6 C 1.38819 * 119.99742 * 217.57550 * 4 3 2 7 7 N 1.31619 * 120.00140 * 21.43054 * 6 4 3 8 8 Si 1.86805 * 119.99803 * 201.42800 * 6 4 3 9 9 H 1.48499 * 109.46951 * 90.00507 * 8 6 4 10 10 H 1.48502 * 109.46685 * 210.00072 * 8 6 4 11 11 H 1.48497 * 109.47367 * 330.00073 * 8 6 4 12 12 C 1.46501 * 120.00073 * 95.31054 * 3 2 1 13 13 C 1.52998 * 109.46751 * 270.00068 * 12 3 2 14 14 N 1.46498 * 109.47165 * 180.02562 * 13 12 3 15 15 C 1.34771 * 120.00353 * 179.72663 * 14 13 12 16 16 O 1.21279 * 119.99998 * 0.26660 * 15 14 13 17 17 C 1.50693 * 120.00345 * 180.27406 * 15 14 13 18 18 H 1.09008 * 110.66632 * 55.69637 * 17 15 14 19 19 C 1.54717 * 110.74895 * 292.48367 * 17 15 14 20 20 C 1.51640 * 101.91132 * 267.03684 * 19 17 15 21 21 C 1.37740 * 132.17016 * 164.30027 * 20 19 17 22 22 C 1.38447 * 119.97248 * 180.33086 * 21 20 19 23 23 Cl 1.73596 * 120.13380 * 180.02562 * 22 21 20 24 24 C 1.38393 * 119.73907 * 359.97438 * 22 21 20 25 25 C 1.37927 * 120.33638 * 359.84997 * 24 22 21 26 26 C 1.38878 * 107.03557 * 344.32082 * 20 19 17 27 27 O 1.36615 * 111.30579 * 359.32906 * 26 20 19 28 28 H 1.09003 * 109.47295 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47334 * 300.00592 * 1 2 3 30 30 H 1.09001 * 109.46964 * 59.99922 * 1 2 3 31 31 H 1.09003 * 109.47334 * 239.99408 * 2 1 3 32 32 H 1.09001 * 109.46964 * 120.00078 * 2 1 3 33 33 H 0.96994 * 120.00046 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46652 * 150.00233 * 12 3 2 35 35 H 1.08998 * 109.47051 * 29.99495 * 12 3 2 36 36 H 1.08998 * 109.47526 * 59.99683 * 13 12 3 37 37 H 1.09003 * 109.47121 * 299.99944 * 13 12 3 38 38 H 0.97004 * 119.99888 * 359.97438 * 14 13 12 39 39 H 1.08994 * 110.93588 * 25.19098 * 19 17 15 40 40 H 1.08998 * 110.94322 * 148.87890 * 19 17 15 41 41 H 1.07994 * 120.01631 * 0.31984 * 21 20 19 42 42 H 1.07996 * 119.83224 * 179.83055 * 24 22 21 43 43 H 1.08001 * 119.87580 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6491 8 14 3.0995 4.2793 -2.6586 9 1 2.5378 5.5068 -2.0396 10 1 4.4551 4.5693 -3.1910 11 1 2.2168 3.8356 -3.7673 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7382 1.8365 14 7 1.4976 3.3902 3.0994 15 6 0.5666 4.0820 3.7857 16 8 -0.5664 4.1608 3.3602 17 6 0.9332 4.7579 5.0817 18 1 1.7735 5.4371 4.9371 19 6 1.2568 3.7106 6.1736 20 6 -0.0879 3.5424 6.8541 21 6 -0.5776 2.5797 7.7090 22 6 -1.8744 2.6723 8.1848 23 17 -2.4957 1.4618 9.2628 24 6 -2.6732 3.7344 7.7984 25 6 -2.1826 4.7008 6.9454 26 6 -0.8783 4.6156 6.4643 27 8 -0.1975 5.4562 5.6298 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.0492 3.4025 -0.7835 34 1 3.1617 2.7641 1.0858 35 1 2.7254 1.2833 1.9721 36 1 0.3541 2.0069 2.0138 37 1 0.7904 3.4876 1.1276 38 1 2.4037 3.3271 3.4400 39 1 1.5879 2.7728 5.7279 40 1 2.0016 4.0929 6.8716 41 1 0.0496 1.7529 8.0078 42 1 -3.6859 3.8066 8.1665 43 1 -2.8126 5.5262 6.6484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567338567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:49 Heat of formation + Delta-G solvation = -46.657236 kcal Electronic energy + Delta-G solvation = -26668.862894 eV Core-core repulsion = 22740.231880 eV Total energy + Delta-G solvation = -3928.631014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.60095 -40.34869 -38.73980 -38.04986 -37.15518 -35.75694 -33.94494 -33.82067 -31.68120 -30.96839 -30.61242 -29.09298 -26.37961 -25.42694 -23.73918 -23.26975 -22.83702 -22.17093 -21.61689 -19.26823 -18.48670 -18.21046 -18.05263 -17.31412 -17.03478 -16.71906 -16.37216 -15.98467 -15.59291 -15.48828 -15.19291 -14.93766 -14.61718 -14.45403 -14.23364 -14.12335 -13.90876 -13.74042 -13.53800 -13.32412 -13.25743 -13.04376 -12.78482 -12.65350 -12.39805 -12.37996 -12.31406 -12.06849 -12.02922 -11.75671 -11.68815 -11.50883 -10.90165 -10.55869 -10.12727 -10.04749 -9.18096 -8.60731 -7.87191 -5.49667 0.01462 0.13899 1.07764 1.42071 1.43183 1.47661 1.53974 1.82186 2.26571 2.49024 2.51482 3.19905 3.24190 3.35858 3.54205 3.73310 3.82740 4.01707 4.09006 4.15464 4.29913 4.40184 4.44310 4.46155 4.61508 4.66916 4.73687 4.77379 4.80693 4.83242 4.92382 5.07150 5.10756 5.19521 5.20249 5.27552 5.31228 5.35725 5.54571 5.65566 5.73868 5.90219 6.43372 6.51029 7.12107 7.17238 7.81869 8.33661 9.08718 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002579 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.400568 B =10852.792498 C =11708.801466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.271 4.271 5 H 0.049 0.951 6 C -0.026 4.026 7 N -0.908 5.908 8 Si 0.949 3.051 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.146 3.854 13 C 0.119 3.881 14 N -0.701 5.701 15 C 0.487 3.513 16 O -0.581 6.581 17 C 0.065 3.935 18 H 0.181 0.819 19 C -0.088 4.088 20 C -0.169 4.169 21 C -0.063 4.063 22 C -0.072 4.072 23 Cl -0.061 7.061 24 C -0.075 4.075 25 C -0.134 4.134 26 C 0.087 3.913 27 O -0.292 6.292 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.027 0.973 38 H 0.417 0.583 39 H 0.112 0.888 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 0.388 21.718 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.319 5.319 4 C -0.401 4.401 5 H 0.067 0.933 6 C -0.224 4.224 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.216 1.216 10 H -0.214 1.214 11 H -0.199 1.199 12 C 0.019 3.981 13 C -0.007 4.007 14 N -0.355 5.355 15 C 0.273 3.727 16 O -0.460 6.460 17 C 0.005 3.995 18 H 0.198 0.802 19 C -0.124 4.124 20 C -0.170 4.170 21 C -0.082 4.082 22 C -0.098 4.098 23 Cl -0.032 7.032 24 C -0.093 4.093 25 C -0.153 4.153 26 C 0.042 3.958 27 O -0.205 6.205 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.254 0.746 39 H 0.131 0.869 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.180 0.820 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.632 0.605 21.402 22.414 hybrid contribution 0.156 0.677 -0.961 1.186 sum -6.476 1.282 20.441 21.480 Atomic orbital electron populations 1.22224 0.98205 1.00812 1.00240 1.21006 0.92971 0.85468 0.99385 1.43863 1.76347 1.09635 1.02070 1.19141 1.04391 1.21834 0.94777 0.93291 1.25715 0.94022 1.02695 0.99977 1.70063 1.03447 1.37841 1.43747 0.85571 0.76796 0.80172 0.79722 1.21613 1.21385 1.19920 1.20940 0.94165 0.96865 0.86159 1.21964 1.00130 0.95254 0.83350 1.45849 1.14088 1.52240 1.23303 1.21596 0.85188 0.78903 0.87020 1.90708 1.22588 1.62003 1.70713 1.23630 0.89127 0.96401 0.90311 0.80208 1.21914 0.94924 0.99941 0.95654 1.20892 0.97111 0.97001 1.01987 1.20328 0.94041 0.98419 0.95373 1.20792 0.95198 0.94047 0.99798 1.98367 1.87145 1.54766 1.62910 1.20996 1.00838 0.91544 0.95954 1.20469 0.92021 1.02004 1.00791 1.20106 0.93453 0.90588 0.91640 1.87049 1.40352 1.34810 1.58256 0.91253 0.94199 0.94837 0.94473 0.92765 0.93579 0.90600 0.93231 0.93563 0.95463 0.74595 0.86927 0.83730 0.82610 0.81961 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.54 10.21 71.98 0.73 -4.81 16 2 C 0.14 5.50 6.44 86.38 0.56 6.05 16 3 N -0.60 -28.34 2.43 -702.00 -1.71 -30.05 16 4 C -0.27 -14.46 9.45 84.04 0.79 -13.67 16 5 H 0.05 2.68 7.92 -2.91 -0.02 2.66 16 6 C -0.03 -1.37 4.95 84.86 0.42 -0.95 16 7 N -0.91 -49.41 11.47 21.65 0.25 -49.16 16 8 Si 0.95 43.69 29.61 68.60 2.03 45.72 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.15 6.15 5.45 86.38 0.47 6.62 16 13 C 0.12 4.69 6.00 86.38 0.52 5.21 16 14 N -0.70 -20.96 5.48 -463.08 -2.54 -23.50 16 15 C 0.49 15.34 7.05 87.66 0.62 15.96 16 16 O -0.58 -24.72 16.50 15.21 0.25 -24.47 16 17 C 0.06 1.39 4.10 30.43 0.12 1.52 16 18 H 0.18 2.48 8.14 -2.38 -0.02 2.46 16 19 C -0.09 -1.33 6.64 30.73 0.20 -1.13 16 20 C -0.17 -3.51 6.26 -19.53 -0.12 -3.63 16 21 C -0.06 -1.18 9.82 22.20 0.22 -0.96 16 22 C -0.07 -1.36 6.33 22.36 0.14 -1.22 16 23 Cl -0.06 -1.03 28.97 -2.72 -0.08 -1.11 16 24 C -0.07 -1.40 9.81 22.23 0.22 -1.18 16 25 C -0.13 -2.99 10.06 22.45 0.23 -2.76 16 26 C 0.09 2.20 6.88 22.68 0.16 2.36 16 27 O -0.29 -7.97 10.45 -82.45 -0.86 -8.83 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.44 6.64 -2.39 -0.02 1.43 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 32 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 33 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 34 H 0.08 3.62 5.52 -2.39 -0.01 3.60 16 35 H 0.05 1.86 7.86 -2.39 -0.02 1.85 16 36 H 0.05 1.88 6.64 -2.39 -0.02 1.86 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 9.29 8.47 -92.71 -0.79 8.50 16 39 H 0.11 1.51 7.85 -2.39 -0.02 1.49 16 40 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -70.86 375.68 2.87 -67.99 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.25 Total: 15.99 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.28 Total: 7.41 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -4.00 Total: -102.71 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.61 Total: -33.29 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -70.86 2.87 -67.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567338567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.334 kcal (2) G-P(sol) polarization free energy of solvation -70.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds