Wall clock time and date at job start Tue Mar 31 2020 21:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35650 * 116.99963 * 2 1 4 4 C 1.38641 * 120.14537 * 359.97438 * 3 2 1 5 5 C 1.38205 * 120.07293 * 180.02562 * 4 3 2 6 6 Cl 1.73597 * 119.81788 * 179.97438 * 5 4 3 7 7 C 1.38702 * 120.35960 * 359.97438 * 5 4 3 8 8 C 1.37727 * 120.28885 * 0.02562 * 7 5 4 9 9 C 1.39743 * 119.91929 * 359.97438 * 8 7 5 10 10 C 1.47482 * 120.17434 * 180.28110 * 9 8 7 11 11 O 1.21599 * 119.99784 * 179.71971 * 10 9 8 12 12 N 1.34774 * 119.99939 * 359.72278 * 10 9 8 13 13 C 1.46497 * 119.99684 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 10 15 15 N 1.46497 * 109.47301 * 180.02562 * 14 13 12 16 16 C 1.36940 * 119.99908 * 269.99896 * 15 14 13 17 17 H 1.07994 * 119.99786 * 140.54215 * 16 15 14 18 18 C 1.38806 * 119.99934 * 320.53573 * 16 15 14 19 19 N 1.31622 * 120.00310 * 340.28173 * 18 16 15 20 20 Si 1.86803 * 119.99757 * 160.27856 * 18 16 15 21 21 H 1.48494 * 109.47378 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47006 * 120.00440 * 20 18 16 23 23 H 1.48502 * 109.46939 * 239.99722 * 20 18 16 24 24 C 1.46498 * 119.99892 * 89.99945 * 15 14 13 25 25 C 1.52999 * 117.49941 * 183.28545 * 24 15 14 26 26 C 1.53006 * 60.00304 * 252.51395 * 25 24 15 27 27 H 1.09000 * 109.47386 * 299.99937 * 1 2 3 28 28 H 1.09002 * 109.47029 * 60.00199 * 1 2 3 29 29 H 1.09002 * 109.47598 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.96039 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.85416 * 179.97438 * 7 5 4 32 32 H 1.07998 * 120.03703 * 180.02562 * 8 7 5 33 33 H 0.96997 * 119.99794 * 0.02562 * 12 10 9 34 34 H 1.08997 * 109.47150 * 299.99977 * 13 12 10 35 35 H 1.09004 * 109.47335 * 59.99661 * 13 12 10 36 36 H 1.09003 * 109.47124 * 300.00582 * 14 13 12 37 37 H 1.09004 * 109.47100 * 59.99643 * 14 13 12 38 38 H 0.97001 * 119.99781 * 175.01672 * 19 18 16 39 39 H 1.08996 * 115.55341 * 329.00167 * 24 15 14 40 40 H 1.08998 * 117.49687 * 0.02562 * 25 24 15 41 41 H 1.08996 * 117.49924 * 145.02073 * 25 24 15 42 42 H 1.09000 * 117.49274 * 252.51088 * 26 25 24 43 43 H 1.08997 * 117.51712 * 107.47755 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9217 3.6039 -0.0011 6 17 0.9734 5.0580 -0.0024 7 6 3.3064 3.6835 -0.0005 8 6 4.0681 2.5360 0.0000 9 6 3.4445 1.2854 0.0005 10 6 4.2546 0.0531 0.0074 11 8 3.7086 -1.0334 0.0130 12 7 5.6001 0.1312 0.0075 13 6 6.4048 -1.0930 0.0137 14 6 7.8904 -0.7269 0.0118 15 7 8.6951 -1.9510 0.0174 16 6 9.0713 -2.5176 1.2059 17 1 9.0665 -3.5918 1.3175 18 6 9.4591 -1.7113 2.2672 19 7 9.8399 -0.4709 2.0464 20 14 9.4403 -2.3867 4.0087 21 1 8.9763 -3.7971 3.9877 22 1 10.8104 -2.3253 4.5782 23 1 8.5201 -1.5746 4.8447 24 6 9.0972 -2.5690 -1.2486 25 6 9.8708 -3.8871 -1.1769 26 6 10.5913 -2.5981 -1.5772 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2140 2.3188 -0.0014 31 1 3.7894 4.6495 -0.0014 32 1 5.1460 2.6027 0.0008 33 1 6.0356 0.9979 0.0034 34 1 6.1747 -1.6745 0.9064 35 1 6.1753 -1.6832 -0.8735 36 1 8.1202 -0.1455 -0.8812 37 1 8.1202 -0.1364 0.8987 38 1 10.0415 0.1147 2.7930 39 1 8.4021 -2.4375 -2.0777 40 1 10.0801 -4.2947 -0.1879 41 1 9.6844 -4.6232 -1.9589 42 1 10.8789 -2.4862 -2.6227 43 1 11.2749 -2.1571 -0.8518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567448023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:18 Heat of formation + Delta-G solvation = -1.181912 kcal Electronic energy + Delta-G solvation = -26407.518336 eV Core-core repulsion = 22480.859280 eV Total energy + Delta-G solvation = -3926.659056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.72642 -38.81923 -37.87504 -37.07471 -36.55856 -34.70860 -33.21967 -31.64169 -30.61534 -30.53084 -27.90794 -27.22995 -24.65156 -23.71767 -22.57415 -21.70330 -21.25264 -20.34659 -19.76624 -18.70287 -17.32930 -16.76269 -16.19274 -16.04881 -15.56787 -15.50608 -15.16427 -14.98808 -14.75682 -14.49184 -13.99975 -13.90871 -13.58656 -13.38824 -12.75812 -12.75072 -12.61677 -12.21492 -12.04755 -11.90816 -11.63599 -11.55079 -11.32526 -11.10051 -11.05073 -10.75931 -10.71070 -10.32100 -10.14477 -9.85015 -9.62568 -9.56791 -9.27451 -9.26179 -8.63975 -8.53135 -8.39641 -6.60277 -5.85319 -3.51939 0.47071 1.00762 1.68371 2.82345 3.00149 3.31377 3.41159 3.44152 3.49004 3.72907 4.35403 4.41238 4.60715 4.68635 4.80968 4.90580 4.91537 4.94274 5.17058 5.19277 5.27321 5.31501 5.33337 5.65048 5.79712 5.88085 5.91396 6.05363 6.10766 6.20079 6.21661 6.29596 6.51128 6.52351 6.62631 6.86140 6.98182 7.06049 7.09009 7.23611 7.47603 7.76062 7.91702 8.43772 8.59942 9.08484 9.68976 10.26871 11.10008 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.002565 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.470441 B =10914.098990 C =11224.797049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.272 6.272 3 C 0.195 3.805 4 C -0.216 4.216 5 C 0.025 3.975 6 Cl -0.065 7.065 7 C -0.157 4.157 8 C -0.034 4.034 9 C -0.160 4.160 10 C 0.552 3.448 11 O -0.523 6.523 12 N -0.717 5.717 13 C 0.100 3.900 14 C 0.141 3.859 15 N -0.547 5.547 16 C -0.260 4.260 17 H 0.066 0.934 18 C 0.016 3.984 19 N -0.883 5.883 20 Si 0.895 3.105 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.287 1.287 24 C 0.119 3.881 25 C -0.195 4.195 26 C -0.219 4.219 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.395 0.605 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.099 0.901 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.577 10.045 -5.695 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.182 6.182 3 C 0.146 3.854 4 C -0.235 4.235 5 C -0.002 4.002 6 Cl -0.036 7.036 7 C -0.176 4.176 8 C -0.053 4.053 9 C -0.164 4.164 10 C 0.337 3.663 11 O -0.400 6.400 12 N -0.369 5.369 13 C -0.025 4.025 14 C 0.014 3.986 15 N -0.264 5.264 16 C -0.389 4.389 17 H 0.083 0.917 18 C -0.185 4.185 19 N -0.525 5.525 20 Si 0.724 3.276 21 H -0.199 1.199 22 H -0.215 1.215 23 H -0.213 1.213 24 C 0.011 3.989 25 C -0.233 4.233 26 C -0.260 4.260 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.841 9.257 -5.557 20.004 hybrid contribution -0.089 0.514 0.950 1.084 sum -16.930 9.771 -4.607 20.082 Atomic orbital electron populations 1.23219 0.78629 1.04621 1.01219 1.86453 1.20815 1.24633 1.86305 1.18865 0.90873 0.84532 0.91122 1.21040 1.00909 0.90333 1.11245 1.20816 0.91948 0.87185 1.00241 1.98384 1.72426 1.36172 1.96578 1.20887 0.91240 0.99803 1.05691 1.21220 1.00482 0.90014 0.93622 1.19682 0.90932 0.94807 1.10978 1.17862 0.82400 0.88187 0.77814 1.90819 1.71618 1.28512 1.49012 1.46000 1.05455 1.10974 1.74475 1.22347 0.93377 0.85233 1.01526 1.21009 0.85532 0.89816 1.02211 1.43175 1.55633 1.27559 1.00047 1.19088 1.39380 0.91756 0.88695 0.91653 1.25237 0.96992 0.96818 0.99448 1.70062 1.45041 1.06987 1.30375 0.86351 0.77329 0.79051 0.84838 1.19878 1.21546 1.21299 1.21244 0.90488 0.96929 0.90285 1.23023 1.07023 0.91112 1.02126 1.23342 1.00478 1.02627 0.99563 0.92476 0.92493 0.87686 0.83859 0.84063 0.83586 0.77100 0.91455 0.92971 0.94917 0.88350 0.93573 0.89531 0.88417 0.90750 0.91251 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.27 -3.80 8.57 -40.54 -0.35 -4.15 16 3 C 0.20 2.56 6.70 -38.71 -0.26 2.30 16 4 C -0.22 -2.22 8.80 -39.44 -0.35 -2.57 16 5 C 0.03 0.25 6.32 -39.42 -0.25 0.00 16 6 Cl -0.06 -0.56 28.94 -51.86 -1.50 -2.06 16 7 C -0.16 -1.48 9.80 -39.60 -0.39 -1.87 16 8 C -0.03 -0.37 9.53 -39.21 -0.37 -0.74 16 9 C -0.16 -2.22 5.89 -104.84 -0.62 -2.83 16 10 C 0.55 9.58 7.76 -12.49 -0.10 9.48 16 11 O -0.52 -11.06 15.16 -16.61 -0.25 -11.31 16 12 N -0.72 -11.83 5.51 -61.37 -0.34 -12.17 16 13 C 0.10 1.99 6.00 -4.04 -0.02 1.96 16 14 C 0.14 3.04 5.45 -4.04 -0.02 3.02 16 15 N -0.55 -13.02 2.75 -165.66 -0.46 -13.47 16 16 C -0.26 -6.78 8.47 -15.06 -0.13 -6.91 16 17 H 0.07 1.74 6.74 -52.49 -0.35 1.38 16 18 C 0.02 0.42 4.98 -17.43 -0.09 0.33 16 19 N -0.88 -23.98 11.50 55.49 0.64 -23.34 16 20 Si 0.90 21.07 29.60 -169.99 -5.03 16.04 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.12 2.51 6.56 -67.93 -0.45 2.07 16 25 C -0.19 -3.83 9.80 -26.73 -0.26 -4.09 16 26 C -0.22 -4.42 10.36 -26.72 -0.28 -4.69 16 27 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.14 1.15 6.30 -52.48 -0.33 0.82 16 31 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.15 1.25 6.40 -52.49 -0.34 0.91 16 33 H 0.39 5.34 6.50 -40.82 -0.27 5.07 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.10 2.36 5.59 -51.93 -0.29 2.07 16 38 H 0.25 6.67 8.32 -40.82 -0.34 6.33 16 39 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 40 H 0.10 2.10 6.46 -51.93 -0.34 1.76 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -31.38 374.33 -9.88 -41.25 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.64 Total: 6.97 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.59 Total: -3.41 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.15 Total: -48.98 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.60 Total: -15.46 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.38 -9.88 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567448023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.073 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds