Wall clock time and date at job start Tue Mar 31 2020 21:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35650 * 116.99963 * 2 1 4 4 C 1.38641 * 120.14537 * 359.97438 * 3 2 1 5 5 C 1.38205 * 120.07293 * 180.02562 * 4 3 2 6 6 Cl 1.73597 * 119.81788 * 179.97438 * 5 4 3 7 7 C 1.38702 * 120.35960 * 359.97438 * 5 4 3 8 8 C 1.37727 * 120.28885 * 0.02562 * 7 5 4 9 9 C 1.39743 * 119.91929 * 359.97438 * 8 7 5 10 10 C 1.47482 * 120.17434 * 180.28110 * 9 8 7 11 11 O 1.21599 * 119.99784 * 179.71971 * 10 9 8 12 12 N 1.34774 * 119.99939 * 359.72278 * 10 9 8 13 13 C 1.46497 * 119.99684 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 10 15 15 N 1.46497 * 109.47301 * 180.02562 * 14 13 12 16 16 C 1.36940 * 119.99908 * 269.99896 * 15 14 13 17 17 H 1.07994 * 119.99786 * 140.54215 * 16 15 14 18 18 C 1.38806 * 119.99934 * 320.53573 * 16 15 14 19 19 N 1.31622 * 120.00310 * 340.28173 * 18 16 15 20 20 Si 1.86803 * 119.99757 * 160.27856 * 18 16 15 21 21 H 1.48494 * 109.47378 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47006 * 120.00440 * 20 18 16 23 23 H 1.48502 * 109.46939 * 239.99722 * 20 18 16 24 24 C 1.46498 * 119.99892 * 89.99945 * 15 14 13 25 25 C 1.52999 * 117.49941 * 183.28545 * 24 15 14 26 26 C 1.53006 * 60.00304 * 252.51395 * 25 24 15 27 27 H 1.09000 * 109.47386 * 299.99937 * 1 2 3 28 28 H 1.09002 * 109.47029 * 60.00199 * 1 2 3 29 29 H 1.09002 * 109.47598 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.96039 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.85416 * 179.97438 * 7 5 4 32 32 H 1.07998 * 120.03703 * 180.02562 * 8 7 5 33 33 H 0.96997 * 119.99794 * 0.02562 * 12 10 9 34 34 H 1.08997 * 109.47150 * 299.99977 * 13 12 10 35 35 H 1.09004 * 109.47335 * 59.99661 * 13 12 10 36 36 H 1.09003 * 109.47124 * 300.00582 * 14 13 12 37 37 H 1.09004 * 109.47100 * 59.99643 * 14 13 12 38 38 H 0.97001 * 119.99781 * 175.01672 * 19 18 16 39 39 H 1.08996 * 115.55341 * 329.00167 * 24 15 14 40 40 H 1.08998 * 117.49687 * 0.02562 * 25 24 15 41 41 H 1.08996 * 117.49924 * 145.02073 * 25 24 15 42 42 H 1.09000 * 117.49274 * 252.51088 * 26 25 24 43 43 H 1.08997 * 117.51712 * 107.47755 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9217 3.6039 -0.0011 6 17 0.9734 5.0580 -0.0024 7 6 3.3064 3.6835 -0.0005 8 6 4.0681 2.5360 0.0000 9 6 3.4445 1.2854 0.0005 10 6 4.2546 0.0531 0.0074 11 8 3.7086 -1.0334 0.0130 12 7 5.6001 0.1312 0.0075 13 6 6.4048 -1.0930 0.0137 14 6 7.8904 -0.7269 0.0118 15 7 8.6951 -1.9510 0.0174 16 6 9.0713 -2.5176 1.2059 17 1 9.0665 -3.5918 1.3175 18 6 9.4591 -1.7113 2.2672 19 7 9.8399 -0.4709 2.0464 20 14 9.4403 -2.3867 4.0087 21 1 8.9763 -3.7971 3.9877 22 1 10.8104 -2.3253 4.5782 23 1 8.5201 -1.5746 4.8447 24 6 9.0972 -2.5690 -1.2486 25 6 9.8708 -3.8871 -1.1769 26 6 10.5913 -2.5981 -1.5772 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2140 2.3188 -0.0014 31 1 3.7894 4.6495 -0.0014 32 1 5.1460 2.6027 0.0008 33 1 6.0356 0.9979 0.0034 34 1 6.1747 -1.6745 0.9064 35 1 6.1753 -1.6832 -0.8735 36 1 8.1202 -0.1455 -0.8812 37 1 8.1202 -0.1364 0.8987 38 1 10.0415 0.1147 2.7930 39 1 8.4021 -2.4375 -2.0777 40 1 10.0801 -4.2947 -0.1879 41 1 9.6844 -4.6232 -1.9589 42 1 10.8789 -2.4862 -2.6227 43 1 11.2749 -2.1571 -0.8518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567448023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:17 Heat of formation + Delta-G solvation = -18.723466 kcal Electronic energy + Delta-G solvation = -26408.278995 eV Core-core repulsion = 22480.859280 eV Total energy + Delta-G solvation = -3927.419715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70060 -40.08722 -38.79800 -38.69513 -37.35530 -36.26985 -34.96531 -32.98374 -32.09325 -31.35820 -29.35895 -28.17202 -26.39389 -24.91013 -23.60816 -23.11956 -22.81670 -21.66631 -21.49399 -19.68029 -18.54331 -17.93195 -17.72438 -17.24037 -16.91593 -16.77062 -16.34103 -16.22206 -16.19941 -15.80628 -15.59899 -14.85395 -14.62610 -14.52778 -14.44445 -14.18610 -13.75425 -13.57550 -13.26309 -12.98305 -12.92852 -12.81567 -12.63448 -12.47900 -12.38875 -12.11535 -12.04167 -11.92601 -11.86272 -11.64871 -11.34728 -11.00562 -10.85411 -10.50780 -10.16567 -9.96543 -9.38182 -8.52500 -7.82315 -5.53121 -0.44043 0.19308 0.91889 1.41813 1.47021 1.55571 1.74632 2.13259 2.24131 2.49530 2.64996 3.15421 3.41210 3.52742 3.58651 3.75361 3.87534 3.96212 4.23254 4.30780 4.31850 4.33795 4.38367 4.41495 4.47680 4.53282 4.61807 4.69193 4.78832 4.86319 4.96278 5.03344 5.04634 5.06139 5.23961 5.33641 5.41739 5.47730 5.57349 5.66897 5.74431 6.25418 6.45559 6.62159 7.13459 7.27916 7.79879 8.32056 9.08218 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.002565 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.470441 B =10914.098990 C =11224.797049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.182 3.818 4 C -0.210 4.210 5 C 0.027 3.973 6 Cl -0.048 7.048 7 C -0.152 4.152 8 C -0.027 4.027 9 C -0.189 4.189 10 C 0.550 3.450 11 O -0.570 6.570 12 N -0.709 5.709 13 C 0.123 3.877 14 C 0.150 3.850 15 N -0.565 5.565 16 C -0.264 4.264 17 H 0.054 0.946 18 C -0.025 4.025 19 N -0.905 5.905 20 Si 0.946 3.054 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.287 1.287 24 C 0.099 3.901 25 C -0.185 4.185 26 C -0.210 4.210 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.410 0.590 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.626 11.652 -6.651 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.221 6.221 3 C 0.133 3.867 4 C -0.230 4.230 5 C 0.000 4.000 6 Cl -0.019 7.019 7 C -0.171 4.171 8 C -0.046 4.046 9 C -0.194 4.194 10 C 0.339 3.661 11 O -0.450 6.450 12 N -0.362 5.362 13 C -0.004 4.004 14 C 0.023 3.977 15 N -0.283 5.283 16 C -0.394 4.394 17 H 0.072 0.928 18 C -0.223 4.223 19 N -0.548 5.548 20 Si 0.775 3.225 21 H -0.198 1.198 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.009 4.009 25 C -0.223 4.223 26 C -0.251 4.251 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.130 0.870 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.182 0.818 33 H 0.247 0.753 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.889 10.893 -6.526 21.938 hybrid contribution 0.154 0.068 1.193 1.205 sum -17.736 10.961 -5.333 21.520 Atomic orbital electron populations 1.23503 0.76333 1.05760 1.02887 1.86400 1.23451 1.25711 1.86511 1.19065 0.90868 0.85192 0.91571 1.21193 1.01856 0.89529 1.10382 1.21003 0.92436 0.87617 0.98921 1.98398 1.72065 1.35083 1.96376 1.21182 0.91141 1.00402 1.04346 1.21403 1.01506 0.89134 0.92557 1.19536 0.91219 0.94146 1.14450 1.18420 0.82365 0.88984 0.76372 1.90781 1.72398 1.30586 1.51222 1.45801 1.05369 1.10637 1.74351 1.21829 0.92870 0.86104 0.99569 1.20873 0.85963 0.89087 1.01754 1.43374 1.56362 1.28098 1.00464 1.19155 1.38752 0.91437 0.90073 0.92813 1.25764 0.97383 0.97222 1.01968 1.70138 1.46165 1.07670 1.30869 0.85558 0.76962 0.78416 0.81611 1.19807 1.21586 1.21390 1.21540 0.91515 0.97895 0.89910 1.23034 1.05924 0.91351 1.02021 1.23240 0.98882 1.02488 1.00467 0.90878 0.90611 0.87005 0.81699 0.81386 0.81803 0.75275 0.94924 0.93418 0.93278 0.90643 0.93736 0.87168 0.90784 0.87288 0.87911 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.31 -8.74 8.57 -68.72 -0.59 -9.33 16 3 C 0.18 4.67 6.70 22.84 0.15 4.83 16 4 C -0.21 -3.92 8.80 22.36 0.20 -3.72 16 5 C 0.03 0.47 6.32 22.37 0.14 0.61 16 6 Cl -0.05 -0.69 28.94 -2.72 -0.08 -0.77 16 7 C -0.15 -2.44 9.80 22.26 0.22 -2.22 16 8 C -0.03 -0.53 9.53 22.51 0.21 -0.32 16 9 C -0.19 -5.20 5.89 -20.01 -0.12 -5.32 16 10 C 0.55 19.57 7.76 86.68 0.67 20.24 16 11 O -0.57 -25.15 15.16 16.90 0.26 -24.90 16 12 N -0.71 -23.67 5.51 -466.32 -2.57 -26.24 16 13 C 0.12 4.98 6.00 86.38 0.52 5.50 16 14 C 0.15 6.52 5.45 86.38 0.47 6.99 16 15 N -0.57 -27.18 2.75 -678.03 -1.86 -29.04 16 16 C -0.26 -14.08 8.47 84.03 0.71 -13.37 16 17 H 0.05 2.94 6.74 -2.91 -0.02 2.92 16 18 C -0.02 -1.34 4.98 84.86 0.42 -0.91 16 19 N -0.91 -49.99 11.50 21.65 0.25 -49.74 16 20 Si 0.95 44.13 29.60 68.60 2.03 46.16 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 24 C 0.10 4.09 6.56 44.99 0.30 4.38 16 25 C -0.19 -7.07 9.80 30.60 0.30 -6.77 16 26 C -0.21 -8.21 10.36 30.60 0.32 -7.89 16 27 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 28 H 0.08 0.90 7.66 -2.39 -0.02 0.88 16 29 H 0.11 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.17 2.22 6.30 -2.91 -0.02 2.20 16 31 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 32 H 0.16 2.47 6.40 -2.91 -0.02 2.45 16 33 H 0.41 10.93 6.50 -92.71 -0.60 10.32 16 34 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 37 H 0.08 3.69 5.59 -2.38 -0.01 3.68 16 38 H 0.25 13.48 8.32 -92.71 -0.77 12.71 16 39 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 40 H 0.07 3.19 6.46 -2.39 -0.02 3.17 16 41 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -70.07 374.33 3.51 -66.56 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.45 Total: 24.01 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.63 Total: 3.28 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -4.18 Total: -105.02 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.33 Total: -34.23 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -70.07 3.51 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567448023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.839 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds