Wall clock time and date at job start Tue Mar 31 2020 20:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00477 * 2 1 4 4 C 1.53003 * 109.47103 * 269.99937 * 3 2 1 5 5 H 1.09000 * 109.46939 * 305.00302 * 4 3 2 6 6 O 1.42907 * 109.46997 * 64.99907 * 4 3 2 7 7 C 1.52996 * 109.47301 * 184.99639 * 4 3 2 8 8 N 1.46498 * 109.47059 * 179.97438 * 7 4 3 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 C 1.34775 * 119.99510 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99604 * 180.02562 * 17 2 1 19 19 C 1.50699 * 120.00202 * 359.97438 * 17 2 1 20 20 H 1.09000 * 112.83186 * 50.33445 * 19 17 2 21 21 C 1.53531 * 113.58683 * 181.44513 * 19 17 2 22 22 C 1.51600 * 87.24873 * 114.59346 * 21 19 17 23 23 C 1.39214 * 92.76246 * 0.04152 * 22 21 19 24 24 C 1.38214 * 119.65546 * 180.08224 * 23 22 21 25 25 C 1.38144 * 120.43196 * 359.92642 * 24 23 22 26 26 C 1.38184 * 119.97316 * 0.02562 * 25 24 23 27 27 C 1.38258 * 119.93736 * 0.02562 * 26 25 24 28 28 Cl 1.73597 * 119.84723 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.47118 * 89.99693 * 1 2 3 30 30 H 1.08998 * 109.47760 * 210.00514 * 1 2 3 31 31 H 1.09008 * 109.47080 * 330.00441 * 1 2 3 32 32 H 1.08992 * 109.47604 * 149.99756 * 3 2 1 33 33 H 1.09003 * 109.46647 * 29.99412 * 3 2 1 34 34 H 0.96694 * 114.00447 * 59.99736 * 6 4 3 35 35 H 1.09004 * 109.47066 * 60.00027 * 7 4 3 36 36 H 1.08994 * 109.46974 * 300.00175 * 7 4 3 37 37 H 0.97001 * 120.00384 * 0.02562 * 8 7 4 38 38 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 39 39 H 1.09003 * 113.58504 * 229.18783 * 21 19 17 40 40 H 1.09001 * 113.58420 * 359.92293 * 21 19 17 41 41 H 1.07993 * 119.74642 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.01398 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.03165 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9642 0.9129 -1.9815 6 8 1.2061 1.9935 -2.0814 7 6 3.3239 2.9679 -1.4444 8 7 3.5686 3.3904 -2.8256 9 6 4.3246 4.5042 -3.0772 10 1 4.7441 5.0685 -2.2575 11 6 4.5517 4.9078 -4.3858 12 7 4.0399 4.2203 -5.3847 13 14 5.5835 6.4266 -4.7290 14 1 6.9463 6.2357 -4.1709 15 1 5.6744 6.6423 -6.1955 16 1 4.9496 7.6097 -4.0936 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0010 19 6 1.3852 -2.4723 0.0017 20 1 0.6181 -2.5184 -0.7713 21 6 2.2961 -3.7076 0.0377 22 6 1.7163 -4.0049 1.4065 23 6 0.8895 -2.8854 1.3737 24 6 0.0591 -2.6169 2.4454 25 6 0.0442 -3.4523 3.5455 26 6 0.8636 -4.5645 3.5790 27 6 1.6979 -4.8392 2.5112 28 17 2.7268 -6.2366 2.5560 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5138 32 1 3.1499 1.1383 0.5138 33 1 1.6084 2.0283 0.5138 34 1 0.6956 2.6949 -1.6543 35 1 4.2747 2.7519 -0.9571 36 1 2.8122 3.7652 -0.9054 37 1 3.1915 2.8837 -3.5619 38 1 4.1989 4.5021 -6.2992 39 1 2.0457 -4.4562 -0.7141 40 1 3.3588 -3.4655 0.0559 41 1 -0.5826 -1.7486 2.4217 42 1 -0.6077 -3.2363 4.3791 43 1 0.8530 -5.2180 4.4387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571597522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:55 Heat of formation + Delta-G solvation = -11.765674 kcal Electronic energy + Delta-G solvation = -26355.418415 eV Core-core repulsion = 22428.300412 eV Total energy + Delta-G solvation = -3927.118002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42939 -39.48300 -37.55257 -36.84165 -35.56639 -35.26916 -33.98607 -31.41846 -31.02009 -29.69832 -28.16990 -26.84404 -26.27615 -24.64891 -22.96736 -22.21441 -21.28103 -21.05378 -19.13315 -17.74888 -17.27679 -17.13457 -16.61552 -16.12903 -15.90698 -15.43507 -15.32190 -14.87113 -14.45303 -14.39312 -13.86835 -13.74256 -13.46047 -13.32171 -13.05047 -13.00678 -12.70213 -12.57699 -12.38420 -12.27558 -12.03639 -11.85064 -11.76006 -11.51372 -11.18505 -11.06971 -10.92403 -10.78899 -10.67888 -10.22016 -10.15123 -9.82070 -9.67242 -9.08852 -9.03458 -8.86859 -8.55706 -6.89596 -5.72309 -3.01796 0.69695 0.75745 1.81059 2.38517 2.80217 3.16358 3.45977 3.49935 3.51449 3.66535 3.85770 4.06087 4.33655 4.50470 4.58161 4.76692 4.77646 4.85377 4.91269 5.03513 5.06071 5.14891 5.18067 5.28287 5.32988 5.48064 5.57454 5.59818 5.66975 5.68719 5.73902 5.76980 5.88064 5.99536 6.07523 6.24739 6.32403 6.40712 6.55878 6.75617 7.21050 7.70450 8.00868 8.04102 8.45982 9.57184 10.15237 10.51135 11.50036 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024648 B = 0.002073 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.739636 B =13500.926427 C =14071.858587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.602 5.602 3 C 0.086 3.914 4 C 0.087 3.913 5 H 0.100 0.900 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.529 3.471 18 O -0.527 6.527 19 C -0.064 4.064 20 H 0.126 0.874 21 C -0.054 4.054 22 C -0.109 4.109 23 C -0.108 4.108 24 C -0.084 4.084 25 C -0.107 4.107 26 C -0.106 4.106 27 C -0.009 4.009 28 Cl -0.074 7.074 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.367 0.633 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.389 0.611 38 H 0.256 0.744 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 -19.285 19.571 30.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.334 5.334 3 C -0.037 4.037 4 C 0.026 3.974 5 H 0.118 0.882 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.316 3.684 18 O -0.403 6.403 19 C -0.085 4.085 20 H 0.144 0.856 21 C -0.091 4.091 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.102 4.102 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.036 4.036 28 Cl -0.045 7.045 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.213 0.787 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.223 0.777 38 H 0.065 0.935 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.333 -19.735 19.198 30.168 hybrid contribution 0.202 1.082 0.029 1.101 sum -12.131 -18.653 19.227 29.407 Atomic orbital electron populations 1.21905 0.79247 1.02684 1.02789 1.47632 1.07160 1.05692 1.72895 1.22290 0.98405 0.84312 0.98664 1.22538 0.85184 0.98165 0.91470 0.88184 1.86611 1.32309 1.59023 1.57478 1.21212 0.96364 0.92912 0.89748 1.42231 1.61958 1.32025 1.00771 1.19177 1.23946 1.02479 0.91806 0.91334 1.24765 1.01200 0.99396 0.95588 1.69676 1.49110 1.40798 0.98260 0.86253 0.80154 0.82789 0.76879 1.21251 1.21663 1.21301 1.19929 0.87673 0.84558 0.76267 1.90737 1.13525 1.86857 1.49180 1.21545 0.98484 0.93864 0.94584 0.85600 1.21867 1.01681 0.94377 0.91148 1.22132 0.98244 0.94683 0.95913 1.21747 0.97175 0.96460 0.95455 1.20427 0.98173 0.99754 0.91892 1.20958 0.99245 0.94143 0.98143 1.20969 0.95715 0.98446 0.97324 1.20332 0.97039 0.90892 0.95317 1.98378 1.66844 1.40775 1.98541 0.91426 0.91434 0.90949 0.88844 0.90082 0.78730 0.95538 0.96329 0.77663 0.93458 0.87869 0.86635 0.85509 0.84420 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 9.77 59.85 0.58 1.18 16 2 N -0.60 -6.89 2.84 -181.57 -0.52 -7.40 16 3 C 0.09 1.11 5.11 -4.04 -0.02 1.08 16 4 C 0.09 1.44 3.30 -26.73 -0.09 1.35 16 5 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 6 O -0.55 -8.90 12.64 -35.23 -0.45 -9.35 16 7 C 0.13 2.55 5.92 -4.04 -0.02 2.53 16 8 N -0.73 -19.03 5.49 -59.91 -0.33 -19.36 16 9 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 13 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.53 6.89 7.21 -10.99 -0.08 6.81 16 18 O -0.53 -8.94 15.28 5.55 0.08 -8.86 16 19 C -0.06 -0.62 3.00 -92.22 -0.28 -0.89 16 20 H 0.13 0.95 7.91 -51.93 -0.41 0.54 16 21 C -0.05 -0.52 7.77 -27.18 -0.21 -0.74 16 22 C -0.11 -1.09 7.27 -103.76 -0.75 -1.84 16 23 C -0.11 -0.98 6.18 -103.83 -0.64 -1.62 16 24 C -0.08 -0.62 9.63 -39.62 -0.38 -1.01 16 25 C -0.11 -0.70 10.04 -39.64 -0.40 -1.10 16 26 C -0.11 -0.80 9.82 -39.59 -0.39 -1.19 16 27 C -0.01 -0.09 6.32 -39.50 -0.25 -0.34 16 28 Cl -0.07 -0.69 28.94 -51.86 -1.50 -2.19 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.41 4.89 -51.93 -0.25 0.16 16 31 H 0.07 0.45 7.89 -51.92 -0.41 0.04 16 32 H 0.09 1.32 7.42 -51.93 -0.39 0.94 16 33 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 34 H 0.37 4.68 9.05 45.56 0.41 5.09 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.39 11.00 7.54 -40.82 -0.31 10.69 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.12 1.33 7.04 -51.93 -0.37 0.97 16 41 H 0.13 0.67 7.26 -52.49 -0.38 0.29 16 42 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -35.55 375.83 -9.53 -45.09 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.02 Total: 10.27 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.18 Total: -3.41 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.12 Total: -55.01 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.36 Total: -18.21 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.55 -9.53 -45.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571597522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.320 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds