Wall clock time and date at job start Tue Mar 31 2020 20:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34489 * 126.47489 * 2 1 4 4 N 1.30856 * 109.16548 * 180.28723 * 3 2 1 5 5 C 1.33320 * 109.68320 * 359.72931 * 4 3 2 6 6 C 1.36664 * 107.78664 * 359.97438 * 5 4 3 7 7 C 1.46758 * 126.84581 * 180.02562 * 6 5 4 8 8 O 1.21681 * 119.99882 * 184.84974 * 7 6 5 9 9 N 1.34784 * 120.00101 * 4.84544 * 7 6 5 10 10 C 1.46497 * 119.99706 * 174.46555 * 9 7 6 11 11 H 1.08996 * 112.85629 * 23.80860 * 10 9 7 12 12 C 1.53789 * 113.61210 * 155.00374 * 10 9 7 13 13 C 1.53780 * 87.08030 * 89.19877 * 12 10 9 14 14 H 1.09004 * 113.61436 * 270.80008 * 13 12 10 15 15 N 1.46496 * 113.61381 * 139.98287 * 13 12 10 16 16 C 1.34783 * 120.00134 * 154.99886 * 15 13 12 17 17 O 1.21284 * 119.99822 * 359.97438 * 16 15 13 18 18 C 1.50695 * 119.99916 * 179.97438 * 16 15 13 19 19 S 1.81007 * 109.46980 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99960 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99975 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00335 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00544 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99384 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47536 * 90.00005 * 24 22 20 26 26 H 1.48504 * 109.46558 * 209.99894 * 24 22 20 27 27 H 1.48497 * 109.47435 * 329.99399 * 24 22 20 28 28 C 1.53778 * 87.08284 * 25.43432 * 13 12 10 29 29 H 1.09000 * 109.46915 * 270.20108 * 1 2 3 30 30 H 1.09003 * 109.46978 * 30.20227 * 1 2 3 31 31 H 1.08996 * 109.47256 * 150.19664 * 1 2 3 32 32 H 1.08004 * 125.41829 * 0.02562 * 3 2 1 33 33 H 1.08003 * 126.10651 * 180.02562 * 5 4 3 34 34 H 0.96999 * 119.99762 * 354.47080 * 9 7 6 35 35 H 1.09004 * 113.60801 * 334.65118 * 12 10 9 36 36 H 1.08997 * 113.61584 * 203.74798 * 12 10 9 37 37 H 0.97001 * 120.00226 * 334.99714 * 15 13 12 38 38 H 1.08997 * 109.47346 * 300.00362 * 18 16 15 39 39 H 1.09000 * 109.47116 * 60.00217 * 18 16 15 40 40 H 0.97000 * 120.00186 * 180.02562 * 23 22 20 41 41 H 1.08994 * 113.61485 * 89.11238 * 28 13 12 42 42 H 1.09001 * 113.61637 * 220.01820 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2646 1.0815 0.0000 4 7 3.5138 0.6921 -0.0062 5 6 3.5691 -0.6399 -0.0045 6 6 2.2862 -1.1109 0.0038 7 6 1.8649 -2.5167 0.0090 8 8 0.6839 -2.7982 -0.0728 9 7 2.7860 -3.4960 0.1042 10 6 2.3605 -4.8920 0.2316 11 1 1.3602 -5.0675 -0.1642 12 6 3.4064 -5.9029 -0.2676 13 6 3.9805 -5.8942 1.1590 14 1 4.7417 -5.1304 1.3187 15 7 4.3939 -7.2172 1.6332 16 6 5.3366 -7.3258 2.5904 17 8 5.8431 -6.3282 3.0586 18 6 5.7614 -8.6867 3.0786 19 16 7.0326 -8.5006 4.3537 20 6 7.3359 -10.1943 4.7328 21 1 6.7900 -10.9696 4.2158 22 6 8.2757 -10.5323 5.6967 23 7 8.5020 -11.7975 5.9803 24 14 9.2184 -9.1912 6.5925 25 1 8.4736 -8.7941 7.8143 26 1 10.5603 -9.7001 6.9742 27 1 9.3710 -8.0134 5.7010 28 6 2.5789 -5.4790 1.6362 29 1 -0.3633 0.0036 1.0277 30 1 -0.3633 0.8882 -0.5170 31 1 -0.3633 -0.8917 -0.5107 32 1 1.9289 2.1080 0.0004 33 1 4.4673 -1.2397 -0.0080 34 1 3.7307 -3.2764 0.0885 35 1 4.0869 -5.4940 -1.0146 36 1 2.9809 -6.8625 -0.5612 37 1 3.9891 -8.0151 1.2585 38 1 4.9002 -9.2078 3.4969 39 1 6.1647 -9.2621 2.2453 40 1 9.1585 -12.0336 6.6542 41 1 1.9272 -6.3226 1.8630 42 1 2.5912 -4.7280 2.4261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578446718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:19 Heat of formation + Delta-G solvation = -14.318347 kcal Electronic energy + Delta-G solvation = -25415.396712 eV Core-core repulsion = 21522.504475 eV Total energy + Delta-G solvation = -3892.892237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.23227 -41.46121 -40.33304 -38.94724 -35.51666 -34.88094 -34.66559 -33.70632 -31.14451 -30.45150 -28.01567 -27.85924 -26.74420 -25.77973 -24.07746 -22.48036 -21.93749 -21.23742 -20.69344 -19.81323 -19.00333 -17.93498 -17.73807 -17.14540 -17.07630 -16.93854 -16.91188 -16.45519 -15.89073 -15.66768 -15.60185 -15.11183 -14.97907 -14.85914 -14.63583 -14.35634 -13.98195 -13.86375 -13.60812 -13.51729 -13.37938 -13.33887 -13.19954 -13.00613 -12.60917 -11.93268 -11.87340 -11.63560 -11.49599 -11.16818 -10.99177 -10.93774 -10.76802 -10.52209 -10.27074 -10.00981 -9.66308 -8.98463 -8.51113 -6.21545 0.22106 1.00688 1.31681 1.44326 1.47513 1.57315 1.57432 1.78803 2.20994 2.24266 2.25892 2.30139 2.73470 2.87210 3.38436 3.47395 3.57513 3.77433 3.86647 3.91393 3.94001 4.04238 4.04860 4.26782 4.35099 4.40576 4.49271 4.56230 4.68684 4.74212 4.77403 4.87397 4.99731 5.01566 5.10328 5.36825 5.42934 5.60461 5.71153 6.05835 6.11982 6.33792 6.52001 6.83965 6.94286 7.03405 7.23635 8.61149 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.001894 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.459816 B =14780.652024 C =15636.810305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.433 5.433 3 C 0.217 3.783 4 N -0.534 5.534 5 C 0.038 3.962 6 C -0.114 4.114 7 C 0.600 3.400 8 O -0.574 6.574 9 N -0.692 5.692 10 C 0.129 3.871 11 H 0.110 0.890 12 C -0.128 4.128 13 C 0.115 3.885 14 H 0.099 0.901 15 N -0.700 5.700 16 C 0.536 3.464 17 O -0.563 6.563 18 C -0.113 4.113 19 S -0.178 6.178 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.264 1.264 26 H -0.260 1.260 27 H -0.236 1.236 28 C -0.163 4.163 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.252 0.748 33 H 0.195 0.805 34 H 0.414 0.586 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.419 0.581 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.277 0.723 41 H 0.107 0.893 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.671 22.595 -18.338 34.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.112 5.112 3 C -0.065 4.065 4 N -0.252 5.252 5 C -0.116 4.116 6 C -0.231 4.231 7 C 0.388 3.612 8 O -0.455 6.455 9 N -0.342 5.342 10 C 0.023 3.977 11 H 0.128 0.872 12 C -0.167 4.167 13 C 0.009 3.991 14 H 0.117 0.883 15 N -0.353 5.353 16 C 0.321 3.679 17 O -0.441 6.441 18 C -0.264 4.264 19 S 0.048 5.952 20 C -0.676 4.676 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.184 1.184 27 H -0.160 1.160 28 C -0.203 4.203 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.105 0.895 32 H 0.268 0.732 33 H 0.212 0.788 34 H 0.252 0.748 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.257 0.743 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.121 24.402 -17.532 35.088 hybrid contribution -0.423 -2.040 0.223 2.096 sum -18.545 22.361 -17.308 33.816 Atomic orbital electron populations 1.22461 0.73788 1.06498 1.04963 1.45520 1.09314 1.05470 1.50930 1.25998 0.84835 0.94984 1.00661 1.70195 1.20679 1.12567 1.21807 1.23048 0.95785 0.91571 1.01233 1.20763 0.92179 0.89004 1.21162 1.16869 0.85247 0.83700 0.75350 1.90766 1.18047 1.84395 1.52300 1.45267 1.09947 1.05584 1.73419 1.21663 1.00208 0.79422 0.96425 0.87158 1.23700 0.97137 1.00670 0.95151 1.22723 0.95480 0.85192 0.95658 0.88270 1.45709 1.40156 1.10082 1.39332 1.19982 0.78977 0.89627 0.79281 1.90689 1.56051 1.39518 1.57871 1.23295 1.02439 0.98467 1.02159 1.84727 1.50183 1.10419 1.49835 1.22469 1.27415 0.91040 1.26679 0.91909 1.25564 0.96579 0.97551 0.96352 1.70012 1.34624 1.17831 1.33000 0.85870 0.79287 0.80682 0.80552 1.18829 1.18397 1.16006 1.23991 0.97368 1.01500 0.97419 0.89682 0.85797 0.89535 0.73171 0.78809 0.74845 0.88518 0.85508 0.74322 0.86931 0.86675 0.91401 0.87425 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.74 127.77 1.37 1.92 16 2 N -0.43 -6.05 3.17 -539.81 -1.71 -7.76 16 3 C 0.22 2.68 12.52 180.33 2.26 4.94 16 4 N -0.53 -9.90 11.20 -199.56 -2.24 -12.13 16 5 C 0.04 0.65 11.37 84.10 0.96 1.61 16 6 C -0.11 -2.01 6.91 40.01 0.28 -1.73 16 7 C 0.60 11.26 7.78 86.47 0.67 11.93 16 8 O -0.57 -13.67 14.44 -4.29 -0.06 -13.73 16 9 N -0.69 -9.62 5.25 -443.91 -2.33 -11.95 16 10 C 0.13 1.66 4.35 45.52 0.20 1.86 16 11 H 0.11 1.56 7.41 -2.39 -0.02 1.55 16 12 C -0.13 -1.18 7.58 31.12 0.24 -0.94 16 13 C 0.11 1.92 4.12 45.52 0.19 2.11 16 14 H 0.10 2.06 7.46 -2.38 -0.02 2.04 16 15 N -0.70 -14.01 5.35 -440.04 -2.36 -16.37 16 16 C 0.54 17.11 7.85 87.65 0.69 17.80 16 17 O -0.56 -22.90 15.46 -3.04 -0.05 -22.95 16 18 C -0.11 -4.04 6.16 71.23 0.44 -3.60 16 19 S -0.18 -8.86 18.55 -56.49 -1.05 -9.91 16 20 C -0.53 -30.48 10.04 67.95 0.68 -29.80 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 22 C 0.04 2.63 5.50 84.86 0.47 3.09 16 23 N -0.92 -55.58 13.97 21.65 0.30 -55.28 16 24 Si 0.91 44.87 27.74 68.60 1.90 46.77 16 25 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 28 C -0.16 -2.61 7.68 31.12 0.24 -2.37 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.09 1.12 6.40 -2.39 -0.02 1.11 16 32 H 0.25 0.64 8.06 -2.91 -0.02 0.62 16 33 H 0.20 2.27 7.46 -2.91 -0.02 2.25 16 34 H 0.41 4.28 7.65 -92.71 -0.71 3.57 16 35 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.13 0.66 8.12 -2.39 -0.02 0.64 16 37 H 0.42 5.51 8.73 -92.71 -0.81 4.70 16 38 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 39 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 40 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -84.67 373.32 0.60 -84.06 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.48 Total: 12.43 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 8.67 Total: 6.81 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -8.33 Total: -103.49 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.11 Total: -36.67 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -84.67 0.60 -84.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578446718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.745 kcal (2) G-P(sol) polarization free energy of solvation -84.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds