Wall clock time and date at job start Tue Mar 31 2020 21:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99833 * 2 1 4 4 C 1.38632 * 120.02788 * 0.02562 * 3 2 1 5 5 C 1.38641 * 119.89121 * 180.02562 * 4 3 2 6 6 O 1.35894 * 120.02833 * 179.97438 * 5 4 3 7 7 C 1.42905 * 116.99770 * 0.02562 * 6 5 4 8 8 C 1.38771 * 119.94196 * 359.97438 * 5 4 3 9 9 C 1.38171 * 120.05785 * 0.02937 * 8 5 4 10 10 C 1.50704 * 119.94584 * 179.97438 * 9 8 5 11 11 H 1.09000 * 109.46964 * 24.99494 * 10 9 8 12 12 O 1.45205 * 109.47152 * 144.99654 * 10 9 8 13 13 C 1.34225 * 116.99943 * 209.99855 * 12 10 9 14 14 O 1.20825 * 120.00047 * 0.02562 * 13 12 10 15 15 C 1.50698 * 119.99990 * 179.97438 * 13 12 10 16 16 C 1.53006 * 109.47184 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47184 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99944 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46926 * 60.00512 * 21 19 17 23 23 H 1.48506 * 109.46961 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47227 * 300.00303 * 21 19 17 25 25 C 1.50698 * 109.47175 * 264.99618 * 10 9 8 26 26 O 1.20824 * 120.00308 * 245.00274 * 25 10 9 27 27 O 1.34230 * 119.99798 * 64.99785 * 25 10 9 28 28 C 1.38176 * 120.11201 * 0.22579 * 9 8 5 29 29 H 1.08997 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47004 * 299.99771 * 1 2 3 31 31 H 1.08998 * 109.47047 * 60.00008 * 1 2 3 32 32 H 1.08001 * 120.05526 * 0.04355 * 4 3 2 33 33 H 1.09002 * 109.46764 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47244 * 300.00422 * 7 6 5 35 35 H 1.09005 * 109.46702 * 60.00282 * 7 6 5 36 36 H 1.08007 * 119.96694 * 179.97438 * 8 5 4 37 37 H 1.09001 * 109.46665 * 60.00348 * 15 13 12 38 38 H 1.08993 * 109.47304 * 299.99904 * 15 13 12 39 39 H 1.09001 * 109.46801 * 300.00442 * 16 15 13 40 40 H 1.09001 * 109.46998 * 60.00038 * 16 15 13 41 41 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 42 42 H 0.96699 * 116.99731 * 180.02562 * 27 25 10 43 43 H 1.08002 * 119.97672 * 179.72733 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3739 0.0005 5 6 1.9238 3.6077 0.0000 6 8 1.1869 4.7495 0.0000 7 6 -0.2348 4.6041 0.0011 8 6 3.3098 3.6757 -0.0005 9 6 4.0596 2.5151 -0.0012 10 6 5.5647 2.5918 -0.0023 11 1 5.8804 3.5406 0.4317 12 8 6.1058 1.4966 0.7825 13 6 7.2765 1.7116 1.4029 14 8 7.8305 2.7798 1.2942 15 6 7.8992 0.6212 2.2360 16 6 9.2189 1.1214 2.8269 17 6 9.8420 0.0308 3.6595 18 1 9.3465 -0.9240 3.7571 19 6 11.0451 0.2513 4.2958 20 7 11.6487 1.4137 4.1766 21 14 11.8178 -1.1010 5.3273 22 1 12.0758 -2.2884 4.4736 23 1 13.0992 -0.6157 5.8999 24 1 10.8930 -1.4739 6.4276 25 6 6.0716 2.4937 -1.4181 26 8 6.7388 1.5449 -1.7565 27 8 5.7818 3.4603 -2.3032 28 6 3.4318 1.2842 -0.0059 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3189 0.0017 33 1 -0.7007 5.5896 0.0015 34 1 -0.5446 4.0555 -0.8883 35 1 -0.5432 4.0565 0.8917 36 1 3.8028 4.6366 -0.0014 37 1 8.0893 -0.2506 1.6099 38 1 7.2198 0.3477 3.0432 39 1 9.8982 1.3946 2.0194 40 1 9.0293 1.9934 3.4529 41 1 12.4949 1.5689 4.6246 42 1 6.1287 3.3532 -3.1994 43 1 4.0200 0.3784 -0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607185038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:24 Heat of formation + Delta-G solvation = -224.678356 kcal Electronic energy + Delta-G solvation = -28982.668934 eV Core-core repulsion = 24573.316429 eV Total energy + Delta-G solvation = -4409.352505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24888 -40.56504 -39.60233 -39.16009 -37.43105 -36.40139 -35.84442 -33.59400 -32.10005 -31.05595 -30.66964 -28.73469 -27.61970 -26.99338 -25.91557 -23.16640 -22.76124 -22.21563 -20.97617 -19.86219 -19.08076 -18.22493 -17.58112 -17.33124 -17.19736 -16.38041 -16.34886 -16.31846 -15.99290 -15.87602 -15.85177 -15.27110 -15.17989 -15.03318 -14.45418 -13.74648 -13.66979 -13.51684 -13.00674 -12.81614 -12.62112 -12.46675 -12.23886 -12.08425 -11.98242 -11.71289 -11.57553 -11.51703 -11.41487 -11.22151 -11.00704 -10.91734 -10.65078 -10.35613 -10.04570 -10.02596 -9.59916 -9.18443 -9.00527 -8.35514 -8.30416 -5.99553 -4.04406 0.78833 1.16375 2.00753 2.28387 2.67998 2.86930 2.92255 3.10082 3.35195 3.39478 3.41632 3.53922 4.16319 4.46237 4.47620 4.60789 4.64905 4.70612 4.74348 4.78229 4.83078 4.84833 5.00609 5.03379 5.08210 5.16212 5.24874 5.35897 5.52852 5.85321 5.90845 6.12174 6.13970 6.16060 6.22930 6.32308 6.48759 6.79178 6.83558 7.12452 7.67231 7.71044 7.74187 7.99285 8.14475 8.36492 9.02116 9.59472 11.11482 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.002484 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.724049 B =11268.300369 C =11911.893276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.164 3.836 4 C -0.286 4.286 5 C 0.164 3.836 6 O -0.311 6.311 7 C 0.027 3.973 8 C -0.157 4.157 9 C -0.015 4.015 10 C 0.141 3.859 11 H 0.135 0.865 12 O -0.328 6.328 13 C 0.461 3.539 14 O -0.499 6.499 15 C -0.100 4.100 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.474 3.526 26 O -0.489 6.489 27 O -0.507 6.507 28 C -0.151 4.151 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.414 0.586 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.990 4.166 -12.045 30.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.118 3.882 4 C -0.306 4.306 5 C 0.118 3.882 6 O -0.224 6.224 7 C -0.068 4.068 8 C -0.176 4.176 9 C -0.016 4.016 10 C 0.084 3.916 11 H 0.152 0.848 12 O -0.246 6.246 13 C 0.305 3.695 14 O -0.385 6.385 15 C -0.138 4.138 16 C -0.004 4.004 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.724 3.276 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C 0.313 3.687 26 O -0.374 6.374 27 O -0.319 6.319 28 C -0.170 4.170 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.273 0.727 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -27.491 4.395 -11.732 30.211 hybrid contribution 0.226 -0.646 -0.115 0.694 sum -27.265 3.749 -11.847 29.963 Atomic orbital electron populations 1.23089 0.78330 1.04237 1.01212 1.86137 1.21398 1.26414 1.88245 1.18601 0.91732 0.83754 0.94126 1.21317 1.00592 0.91969 1.16673 1.18465 0.90746 0.84550 0.94420 1.86106 1.19174 1.28688 1.88395 1.23088 0.78377 1.04081 1.01303 1.20013 0.90462 0.98780 1.08365 1.18546 0.90929 0.92775 0.99352 1.20395 0.90363 0.94550 0.86283 0.84756 1.86807 1.38825 1.40723 1.58245 1.25092 0.77225 0.90441 0.76774 1.90644 1.60869 1.27106 1.59849 1.21834 1.00071 0.94535 0.97315 1.19042 0.88200 0.96950 0.96205 1.21103 1.05870 0.99325 1.30360 0.92274 1.25017 0.97025 0.95652 0.96617 1.69983 1.17001 1.22511 1.43313 0.86590 0.78509 0.82000 0.80491 1.20144 1.21276 1.20146 1.23310 0.77292 0.79876 0.88175 1.90780 1.35426 1.32395 1.78847 1.84484 1.73146 1.48777 1.25523 1.20245 0.91330 0.98710 1.06725 0.87924 0.92589 0.92721 0.84574 0.87950 0.92662 0.92589 0.84060 0.88444 0.88537 0.95508 0.95468 0.92786 0.72711 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.22 10.50 -19.42 -0.20 -3.42 16 3 C 0.16 1.84 6.68 -39.24 -0.26 1.58 16 4 C -0.29 -2.71 8.02 -39.29 -0.32 -3.03 16 5 C 0.16 1.71 6.68 -39.24 -0.26 1.45 16 6 O -0.31 -2.91 10.50 -19.41 -0.20 -3.11 16 7 C 0.03 0.14 9.81 101.05 0.99 1.13 16 8 C -0.16 -1.79 9.61 -39.41 -0.38 -2.17 16 9 C -0.02 -0.20 4.98 -104.67 -0.52 -0.72 16 10 C 0.14 2.09 2.67 -29.03 -0.08 2.01 16 11 H 0.14 1.92 7.06 -51.93 -0.37 1.55 16 12 O -0.33 -5.67 8.57 -45.89 -0.39 -6.07 16 13 C 0.46 9.32 7.92 36.00 0.29 9.61 16 14 O -0.50 -11.35 15.20 -18.75 -0.29 -11.63 16 15 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 16 C 0.03 0.88 4.26 -27.88 -0.12 0.77 16 17 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.47 7.04 7.61 36.00 0.27 7.31 16 26 O -0.49 -8.85 17.27 -25.39 -0.44 -9.29 16 27 O -0.51 -5.52 13.41 -39.26 -0.53 -6.05 16 28 C -0.15 -1.94 9.29 -39.40 -0.37 -2.31 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.14 0.90 4.54 -52.49 -0.24 0.66 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.22 7.66 -51.93 -0.40 -0.17 16 35 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 36 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 38 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.41 2.64 9.10 45.56 0.41 3.05 16 43 H 0.15 1.96 7.63 -52.49 -0.40 1.56 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -36.76 379.12 -5.63 -42.39 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.68 Total: 0.39 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.33 Total: 0.91 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -2.05 Total: -39.57 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.76 -5.63 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607185038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.286 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds