Wall clock time and date at job start Tue Mar 31 2020 20:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34664 * 125.80040 * 2 1 4 4 C 1.37872 * 107.39322 * 180.15712 * 3 2 1 5 5 C 1.47672 * 126.37584 * 179.83469 * 4 3 2 6 6 C 1.36623 * 125.65578 * 179.71545 * 5 4 3 7 7 C 1.39743 * 107.13255 * 180.02562 * 6 5 4 8 8 C 1.37908 * 106.77342 * 359.97438 * 7 6 5 9 9 C 1.46240 * 125.96526 * 179.97438 * 8 7 6 10 10 O 1.21747 * 120.00425 * 0.02606 * 9 8 7 11 11 N 1.34781 * 119.99557 * 180.02562 * 9 8 7 12 12 C 1.39111 * 119.99745 * 174.84709 * 11 9 8 13 13 C 1.39721 * 119.57642 * 185.32371 * 12 11 9 14 14 C 1.38644 * 119.49405 * 180.02562 * 13 12 11 15 15 C 1.38358 * 118.66927 * 359.97438 * 14 13 12 16 16 C 1.40570 * 119.14217 * 0.02562 * 15 14 13 17 17 C 1.41330 * 119.78713 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.40028 * 119.99895 * 180.02562 * 17 16 15 20 20 N 1.30745 * 120.00078 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99772 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47166 * 89.99898 * 21 19 17 23 23 H 1.48502 * 109.47125 * 209.99890 * 21 19 17 24 24 H 1.48497 * 109.47311 * 329.99676 * 21 19 17 25 25 N 1.31928 * 119.58415 * 5.04761 * 12 11 9 26 26 O 1.34334 * 125.64645 * 359.71834 * 5 4 3 27 27 C 1.41176 * 107.25238 * 359.57490 * 4 3 2 28 28 N 1.30538 * 108.09570 * 0.26095 * 27 4 3 29 29 H 1.08993 * 109.47065 * 270.28978 * 1 2 3 30 30 H 1.09000 * 109.46752 * 30.29198 * 1 2 3 31 31 H 1.09002 * 109.46989 * 150.29182 * 1 2 3 32 32 H 1.07996 * 126.30639 * 0.02562 * 3 2 1 33 33 H 1.08002 * 126.43371 * 359.73428 * 6 5 4 34 34 H 1.07999 * 126.61401 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99968 * 354.84748 * 11 9 8 36 36 H 1.08000 * 120.25738 * 359.97293 * 13 12 11 37 37 H 1.07996 * 120.66479 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.42415 * 179.97438 * 15 14 13 39 39 H 0.96995 * 119.99850 * 179.97438 * 20 19 17 40 40 H 1.08001 * 125.95277 * 180.26153 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2527 1.0922 0.0000 4 6 3.5609 0.6569 -0.0036 5 6 4.7673 1.5084 -0.0084 6 6 6.0581 1.0608 -0.0064 7 6 6.8846 2.1876 -0.0119 8 6 6.0553 3.2894 -0.0176 9 6 6.4845 4.6874 -0.0240 10 8 7.6711 4.9600 -0.0251 11 7 5.5664 5.6741 -0.0287 12 6 5.9711 7.0012 0.0734 13 6 5.0094 8.0091 0.1802 14 6 5.4146 9.3312 0.2813 15 6 6.7692 9.6127 0.2738 16 6 7.6877 8.5543 0.1638 17 6 9.0746 8.8263 0.1553 18 1 9.4257 9.8447 0.2327 19 6 9.9935 7.7754 0.0454 20 7 9.5685 6.5425 -0.0489 21 14 11.8265 8.1350 0.0334 22 1 12.3444 8.1125 1.4249 23 1 12.5280 7.1036 -0.7725 24 1 12.0643 9.4745 -0.5618 25 7 7.2580 7.2915 0.0737 26 8 4.7774 2.8517 -0.0153 27 6 3.5325 -0.7546 0.0042 28 7 2.2838 -1.1350 0.0063 29 1 -0.3633 0.0052 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9209 2.1199 0.0004 33 1 6.3795 0.0297 0.0029 34 1 7.9646 2.1943 -0.0116 35 1 4.6235 5.4589 -0.1033 36 1 3.9584 7.7605 0.1830 37 1 4.6874 10.1253 0.3651 38 1 7.1163 10.6325 0.3506 39 1 10.2050 5.8147 -0.1254 40 1 4.3938 -1.4062 0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625015093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:46 Heat of formation + Delta-G solvation = 124.273067 kcal Electronic energy + Delta-G solvation = -27396.607388 eV Core-core repulsion = 23374.280975 eV Total energy + Delta-G solvation = -4022.326414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.39068 -41.32189 -39.14682 -37.38100 -34.26910 -33.97534 -33.11979 -32.66324 -31.51734 -30.34373 -29.49043 -28.58187 -26.86077 -25.55353 -23.61824 -22.33087 -21.79170 -21.24311 -20.54088 -20.47344 -19.51166 -18.27024 -17.60217 -16.84101 -16.22843 -16.13508 -15.72090 -15.47159 -14.75611 -14.67017 -14.46088 -14.01546 -13.80216 -13.56979 -13.36616 -13.25085 -13.16091 -13.02937 -12.78749 -12.64433 -12.23464 -12.06685 -11.90170 -11.22438 -11.16138 -10.95596 -10.66036 -10.48583 -10.07435 -9.95803 -9.88079 -9.76789 -9.47115 -9.35745 -9.04269 -7.99327 -7.69225 -7.28874 -6.99534 -6.15882 -4.40912 0.95859 1.60783 2.03033 2.19383 2.82443 2.84315 3.05178 3.12012 3.18267 3.20453 3.27385 3.79531 4.03353 4.04368 4.06576 4.46858 4.62522 4.70067 4.90889 4.92667 4.96210 5.06787 5.18769 5.23622 5.37790 5.88893 5.97187 6.00074 6.02928 6.11923 6.21192 6.46245 6.48797 6.57917 6.63437 6.79250 6.83258 7.06476 7.21879 7.26841 7.54118 7.59201 7.79528 8.01970 8.16893 8.42081 8.70436 9.01804 9.11739 10.20835 10.47210 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.002633 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.221529 B =10633.253370 C =12197.194937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 C 0.084 3.916 4 C -0.177 4.177 5 C 0.088 3.912 6 C -0.211 4.211 7 C -0.126 4.126 8 C -0.063 4.063 9 C 0.558 3.442 10 O -0.383 6.383 11 N -0.656 5.656 12 C 0.371 3.629 13 C -0.354 4.354 14 C -0.036 4.036 15 C -0.303 4.303 16 C 0.271 3.729 17 C -0.423 4.423 18 H 0.083 0.917 19 C 0.058 3.942 20 N -0.659 5.659 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 N -0.475 5.475 26 O -0.164 6.164 27 C 0.083 3.917 28 N -0.297 5.297 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.185 0.815 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.403 0.597 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.273 0.727 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.077 -14.219 -0.315 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.148 5.148 3 C -0.065 4.065 4 C -0.188 4.188 5 C 0.035 3.965 6 C -0.230 4.230 7 C -0.147 4.147 8 C -0.116 4.116 9 C 0.340 3.660 10 O -0.247 6.247 11 N -0.302 5.302 12 C 0.133 3.867 13 C -0.380 4.380 14 C -0.060 4.060 15 C -0.326 4.326 16 C 0.146 3.854 17 C -0.454 4.454 18 H 0.101 0.899 19 C -0.171 4.171 20 N -0.277 5.277 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.188 1.188 25 N -0.194 5.194 26 O -0.060 6.060 27 C -0.103 4.103 28 N -0.117 5.117 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.202 0.798 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.683 -15.775 -0.388 20.886 hybrid contribution 0.156 1.295 0.054 1.305 sum -13.526 -14.480 -0.335 19.818 Atomic orbital electron populations 1.21968 0.73484 1.04938 1.03836 1.48326 1.07072 1.03711 1.55648 1.23060 0.90323 0.93767 0.99341 1.18020 0.89267 0.91925 1.19620 1.19625 0.93113 0.79897 1.03886 1.21490 0.90981 1.00082 1.10478 1.22006 1.01026 0.89999 1.01620 1.23139 0.80307 0.95824 1.12290 1.16892 0.87234 0.81161 0.80748 1.91361 1.13308 1.79370 1.40705 1.43226 1.09606 1.04629 1.72772 1.18541 0.91780 0.82287 0.94095 1.20479 0.96729 0.93227 1.27530 1.20564 0.95177 0.94525 0.95766 1.21628 0.93322 0.98906 1.18746 1.18375 0.93447 0.85648 0.87965 1.19591 0.89433 0.94371 1.41963 0.89869 1.26180 1.00591 0.95199 0.95161 1.70287 1.34989 0.98652 1.23819 0.86486 0.83104 0.79266 0.78919 1.19636 1.20271 1.18769 1.68678 1.09884 1.20433 1.20414 1.84059 1.29784 1.21099 1.71090 1.23893 0.95222 0.92979 0.98224 1.77212 1.01549 1.08044 1.24920 0.90297 0.89022 0.88941 0.79781 0.83006 0.82209 0.76286 0.89005 0.88524 0.88470 0.91487 0.79115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.45 59.85 0.69 1.10 16 2 N -0.37 -3.21 3.99 -67.55 -0.27 -3.48 16 3 C 0.08 0.78 11.51 -16.44 -0.19 0.59 16 4 C -0.18 -1.96 6.12 -105.06 -0.64 -2.61 16 5 C 0.09 1.16 7.16 -36.31 -0.26 0.90 16 6 C -0.21 -2.70 10.56 -39.60 -0.42 -3.12 16 7 C -0.13 -1.97 10.65 -39.14 -0.42 -2.39 16 8 C -0.06 -1.10 7.15 -36.49 -0.26 -1.36 16 9 C 0.56 11.98 7.73 -13.04 -0.10 11.88 16 10 O -0.38 -9.79 12.61 5.15 0.06 -9.72 16 11 N -0.66 -13.59 5.37 -12.71 -0.07 -13.66 16 12 C 0.37 9.17 7.43 -155.09 -1.15 8.01 16 13 C -0.35 -7.97 9.96 -38.88 -0.39 -8.36 16 14 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 15 C -0.30 -7.60 9.83 -38.66 -0.38 -7.98 16 16 C 0.27 7.60 6.55 -85.00 -0.56 7.04 16 17 C -0.42 -11.59 9.14 -37.74 -0.34 -11.93 16 18 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 19 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 20 N -0.66 -18.17 8.98 55.55 0.50 -17.67 16 21 Si 0.90 19.19 29.56 -169.99 -5.02 14.17 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 24 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 25 N -0.48 -13.39 5.73 -10.28 -0.06 -13.45 16 26 O -0.16 -2.48 10.42 3.44 0.04 -2.45 16 27 C 0.08 0.83 11.76 -16.99 -0.20 0.63 16 28 N -0.30 -3.16 12.51 30.85 0.39 -2.77 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.19 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.16 2.42 8.06 -52.49 -0.42 1.99 16 35 H 0.40 6.74 8.45 -40.82 -0.34 6.39 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 39 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 40 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -34.98 358.56 -8.27 -43.25 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.12 Total: 7.76 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -5.12 Total: -7.39 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.49 Total: -51.03 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.10 Total: -12.17 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.98 -8.27 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625015093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.525 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds