Wall clock time and date at job start Tue Mar 31 2020 20:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34664 * 125.80040 * 2 1 4 4 C 1.37872 * 107.39322 * 180.15712 * 3 2 1 5 5 C 1.47672 * 126.37584 * 179.83469 * 4 3 2 6 6 C 1.36623 * 125.65578 * 179.71545 * 5 4 3 7 7 C 1.39743 * 107.13255 * 180.02562 * 6 5 4 8 8 C 1.37908 * 106.77342 * 359.97438 * 7 6 5 9 9 C 1.46240 * 125.96526 * 179.97438 * 8 7 6 10 10 O 1.21747 * 120.00425 * 0.02606 * 9 8 7 11 11 N 1.34781 * 119.99557 * 180.02562 * 9 8 7 12 12 C 1.39111 * 119.99745 * 174.84709 * 11 9 8 13 13 C 1.39721 * 119.57642 * 185.32371 * 12 11 9 14 14 C 1.38644 * 119.49405 * 180.02562 * 13 12 11 15 15 C 1.38358 * 118.66927 * 359.97438 * 14 13 12 16 16 C 1.40570 * 119.14217 * 0.02562 * 15 14 13 17 17 C 1.41330 * 119.78713 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.40028 * 119.99895 * 180.02562 * 17 16 15 20 20 N 1.30745 * 120.00078 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99772 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47166 * 89.99898 * 21 19 17 23 23 H 1.48502 * 109.47125 * 209.99890 * 21 19 17 24 24 H 1.48497 * 109.47311 * 329.99676 * 21 19 17 25 25 N 1.31928 * 119.58415 * 5.04761 * 12 11 9 26 26 O 1.34334 * 125.64645 * 359.71834 * 5 4 3 27 27 C 1.41176 * 107.25238 * 359.57490 * 4 3 2 28 28 N 1.30538 * 108.09570 * 0.26095 * 27 4 3 29 29 H 1.08993 * 109.47065 * 270.28978 * 1 2 3 30 30 H 1.09000 * 109.46752 * 30.29198 * 1 2 3 31 31 H 1.09002 * 109.46989 * 150.29182 * 1 2 3 32 32 H 1.07996 * 126.30639 * 0.02562 * 3 2 1 33 33 H 1.08002 * 126.43371 * 359.73428 * 6 5 4 34 34 H 1.07999 * 126.61401 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99968 * 354.84748 * 11 9 8 36 36 H 1.08000 * 120.25738 * 359.97293 * 13 12 11 37 37 H 1.07996 * 120.66479 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.42415 * 179.97438 * 15 14 13 39 39 H 0.96995 * 119.99850 * 179.97438 * 20 19 17 40 40 H 1.08001 * 125.95277 * 180.26153 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2527 1.0922 0.0000 4 6 3.5609 0.6569 -0.0036 5 6 4.7673 1.5084 -0.0084 6 6 6.0581 1.0608 -0.0064 7 6 6.8846 2.1876 -0.0119 8 6 6.0553 3.2894 -0.0176 9 6 6.4845 4.6874 -0.0240 10 8 7.6711 4.9600 -0.0251 11 7 5.5664 5.6741 -0.0287 12 6 5.9711 7.0012 0.0734 13 6 5.0094 8.0091 0.1802 14 6 5.4146 9.3312 0.2813 15 6 6.7692 9.6127 0.2738 16 6 7.6877 8.5543 0.1638 17 6 9.0746 8.8263 0.1553 18 1 9.4257 9.8447 0.2327 19 6 9.9935 7.7754 0.0454 20 7 9.5685 6.5425 -0.0489 21 14 11.8265 8.1350 0.0334 22 1 12.3444 8.1125 1.4249 23 1 12.5280 7.1036 -0.7725 24 1 12.0643 9.4745 -0.5618 25 7 7.2580 7.2915 0.0737 26 8 4.7774 2.8517 -0.0153 27 6 3.5325 -0.7546 0.0042 28 7 2.2838 -1.1350 0.0063 29 1 -0.3633 0.0052 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9209 2.1199 0.0004 33 1 6.3795 0.0297 0.0029 34 1 7.9646 2.1943 -0.0116 35 1 4.6235 5.4589 -0.1033 36 1 3.9584 7.7605 0.1830 37 1 4.6874 10.1253 0.3651 38 1 7.1163 10.6325 0.3506 39 1 10.2050 5.8147 -0.1254 40 1 4.3938 -1.4062 0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625015093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:44 Heat of formation + Delta-G solvation = 102.421002 kcal Electronic energy + Delta-G solvation = -27397.554965 eV Core-core repulsion = 23374.280975 eV Total energy + Delta-G solvation = -4023.273990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.52323 -42.07057 -40.88426 -39.18376 -36.04342 -34.96866 -34.63842 -33.80939 -32.49154 -32.21421 -31.13170 -29.67928 -27.78370 -27.29027 -24.96379 -23.52515 -23.25101 -22.77216 -21.65564 -21.39695 -20.91239 -19.87268 -18.90430 -18.04933 -17.97261 -17.35724 -16.48628 -16.39998 -16.37582 -16.27163 -15.66404 -15.62208 -15.38302 -15.15346 -14.69831 -14.22556 -14.07590 -13.97311 -13.90883 -13.70297 -13.62458 -13.58612 -13.06689 -12.88583 -12.72435 -12.55631 -12.32547 -11.95016 -11.77199 -11.57585 -11.09371 -11.07796 -10.89897 -10.60501 -10.48386 -9.91602 -9.17930 -8.92035 -8.65116 -8.05584 -6.41650 -0.13153 0.71913 0.97261 1.20051 1.32477 1.38956 1.41783 1.53876 1.56462 1.69659 2.14158 2.27943 2.28983 2.43223 3.00852 3.36232 3.75609 3.87234 3.97064 4.04612 4.08361 4.22412 4.37651 4.43613 4.51889 4.60339 4.69785 4.71557 4.73013 4.83834 4.93383 4.96109 5.02524 5.05638 5.28012 5.40578 5.51479 5.66652 5.76813 5.85861 5.91468 5.95749 6.15503 6.34539 6.54537 6.65709 6.81467 7.06024 7.46018 8.30862 8.57269 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.002633 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.221529 B =10633.253370 C =12197.194937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.365 5.365 3 C 0.096 3.904 4 C -0.211 4.211 5 C 0.110 3.890 6 C -0.215 4.215 7 C -0.117 4.117 8 C -0.101 4.101 9 C 0.556 3.444 10 O -0.436 6.436 11 N -0.647 5.647 12 C 0.348 3.652 13 C -0.343 4.343 14 C -0.033 4.033 15 C -0.325 4.325 16 C 0.235 3.765 17 C -0.463 4.463 18 H 0.088 0.912 19 C 0.010 3.990 20 N -0.694 5.694 21 Si 0.977 3.023 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.255 1.255 25 N -0.510 5.510 26 O -0.165 6.165 27 C 0.088 3.912 28 N -0.324 5.324 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.209 0.791 33 H 0.187 0.813 34 H 0.157 0.843 35 H 0.421 0.579 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.272 0.728 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.392 -15.318 -0.279 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.144 5.144 3 C -0.054 4.054 4 C -0.223 4.223 5 C 0.056 3.944 6 C -0.234 4.234 7 C -0.138 4.138 8 C -0.153 4.153 9 C 0.340 3.660 10 O -0.303 6.303 11 N -0.295 5.295 12 C 0.110 3.890 13 C -0.368 4.368 14 C -0.057 4.057 15 C -0.348 4.348 16 C 0.110 3.890 17 C -0.493 4.493 18 H 0.106 0.894 19 C -0.215 4.215 20 N -0.314 5.314 21 Si 0.798 3.202 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.179 1.179 25 N -0.229 5.229 26 O -0.061 6.061 27 C -0.098 4.098 28 N -0.144 5.144 29 H 0.110 0.890 30 H 0.135 0.865 31 H 0.116 0.884 32 H 0.226 0.774 33 H 0.204 0.796 34 H 0.175 0.825 35 H 0.258 0.742 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -16.088 -16.896 -0.354 23.333 hybrid contribution 0.490 1.493 0.051 1.573 sum -15.599 -15.402 -0.304 21.923 Atomic orbital electron populations 1.22364 0.71043 1.06538 1.05227 1.48735 1.08482 1.03064 1.54086 1.23495 0.89965 0.94949 0.97018 1.18121 0.89201 0.92265 1.22743 1.20130 0.94299 0.79149 1.00773 1.21812 0.90211 1.00866 1.10520 1.22217 1.01173 0.90650 0.99727 1.22285 0.81691 0.94163 1.17136 1.17293 0.86783 0.82564 0.79345 1.91341 1.15176 1.80704 1.43112 1.43178 1.10593 1.03404 1.72311 1.19043 0.91589 0.84301 0.94051 1.20956 0.98317 0.92749 1.24799 1.21048 0.94980 0.95838 0.93883 1.21826 0.94403 0.98799 1.19749 1.18891 0.94659 0.86687 0.88771 1.19919 0.90197 0.95071 1.44150 0.89394 1.27060 1.05396 0.94725 0.94316 1.70488 1.36390 0.99439 1.25041 0.85292 0.76657 0.79249 0.78999 1.19101 1.19794 1.17899 1.68637 1.11965 1.20865 1.21484 1.84008 1.28435 1.22217 1.71463 1.24300 0.95832 0.92767 0.96920 1.77198 1.02043 1.09227 1.25943 0.88982 0.86487 0.88382 0.77418 0.79563 0.82543 0.74202 0.85021 0.84238 0.87458 0.91737 0.76843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.45 127.77 1.46 1.93 16 2 N -0.37 -5.32 3.99 -367.62 -1.47 -6.79 16 3 C 0.10 1.51 11.51 84.17 0.97 2.47 16 4 C -0.21 -4.18 6.12 -20.15 -0.12 -4.31 16 5 C 0.11 2.72 7.16 24.39 0.17 2.89 16 6 C -0.21 -5.17 10.56 22.26 0.24 -4.93 16 7 C -0.12 -3.68 10.65 22.56 0.24 -3.44 16 8 C -0.10 -3.58 7.15 24.27 0.17 -3.41 16 9 C 0.56 24.87 7.73 86.32 0.67 25.53 16 10 O -0.44 -23.63 12.61 -4.50 -0.06 -23.68 16 11 N -0.65 -27.24 5.37 -312.33 -1.68 -28.92 16 12 C 0.35 17.45 7.43 133.31 0.99 18.44 16 13 C -0.34 -14.91 9.96 22.73 0.23 -14.68 16 14 C -0.03 -1.46 10.15 22.40 0.23 -1.23 16 15 C -0.32 -16.47 9.83 22.87 0.22 -16.25 16 16 C 0.24 13.75 6.55 40.19 0.26 14.01 16 17 C -0.46 -26.50 9.14 23.47 0.21 -26.29 16 18 H 0.09 4.69 7.85 -2.91 -0.02 4.67 16 19 C 0.01 0.57 5.50 85.29 0.47 1.03 16 20 N -0.69 -40.44 8.98 21.84 0.20 -40.24 16 21 Si 0.98 40.98 29.56 68.60 2.03 43.01 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 25 N -0.51 -29.94 5.73 -186.43 -1.07 -31.01 16 26 O -0.16 -4.84 10.42 -10.61 -0.11 -4.95 16 27 C 0.09 1.52 11.76 85.61 1.01 2.53 16 28 N -0.32 -6.11 12.51 -56.30 -0.70 -6.82 16 29 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.16 4.92 8.06 -2.91 -0.02 4.90 16 35 H 0.42 13.85 8.45 -92.71 -0.78 13.06 16 36 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 38 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 39 H 0.27 14.86 8.29 -92.71 -0.77 14.09 16 40 H 0.22 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -80.78 358.56 4.88 -75.90 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.32 Total: 29.20 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 7.42 Total: -5.69 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -4.72 Total: -113.77 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.17 Total: -28.64 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -80.78 4.88 -75.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625015093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.322 kcal (2) G-P(sol) polarization free energy of solvation -80.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds