Wall clock time and date at job start Tue Mar 31 2020 20:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35998 * 126.28923 * 2 1 4 4 N 1.30217 * 110.17588 * 180.02562 * 3 2 1 5 5 C 1.35437 * 109.57926 * 0.02562 * 4 3 2 6 6 C 1.39902 * 133.80949 * 180.02562 * 5 4 3 7 7 C 1.36981 * 118.35931 * 179.97438 * 6 5 4 8 8 C 1.39748 * 119.59820 * 0.02562 * 7 6 5 9 9 C 1.47938 * 119.42655 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00076 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99922 * 179.97438 * 9 8 7 12 12 C 1.39829 * 119.99977 * 174.78099 * 11 9 8 13 13 C 1.38983 * 120.04163 * 326.13277 * 12 11 9 14 14 C 1.38151 * 120.06539 * 179.74213 * 13 12 11 15 15 C 1.38174 * 120.14085 * 0.55210 * 14 13 12 16 16 C 1.38916 * 120.07483 * 359.70516 * 15 14 13 17 17 O 1.35748 * 120.03116 * 179.97438 * 16 15 14 18 18 C 1.34836 * 116.99738 * 185.91973 * 17 16 15 19 19 H 1.07994 * 120.00067 * 5.40083 * 18 17 16 20 20 C 1.38647 * 119.99591 * 185.39815 * 18 17 16 21 21 N 1.31555 * 120.00291 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99868 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47180 * 60.00066 * 22 20 18 24 24 H 1.48503 * 109.47280 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47177 * 300.00179 * 22 20 18 26 26 C 1.38733 * 120.03515 * 146.40425 * 12 11 9 27 27 N 1.32657 * 121.14304 * 359.97438 * 8 7 6 28 28 C 1.31892 * 121.36460 * 359.97438 * 27 8 7 29 29 H 1.09000 * 109.47408 * 89.97855 * 1 2 3 30 30 H 1.09005 * 109.47123 * 209.97712 * 1 2 3 31 31 H 1.09005 * 109.47593 * 329.97818 * 1 2 3 32 32 H 1.08001 * 124.91279 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.81490 * 359.97172 * 6 5 4 34 34 H 1.08002 * 120.19699 * 179.71996 * 7 6 5 35 35 H 0.97000 * 119.99722 * 354.78967 * 11 9 8 36 36 H 1.08006 * 119.96702 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.92895 * 180.25438 * 14 13 12 38 38 H 1.08001 * 119.96327 * 179.71754 * 15 14 13 39 39 H 0.97004 * 119.99971 * 180.02562 * 21 20 18 40 40 H 1.08004 * 120.07470 * 359.95853 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0962 0.0000 4 7 3.5209 0.7348 -0.0005 5 6 3.6028 -0.6171 -0.0015 6 6 4.6691 -1.5228 -0.0019 7 6 4.3847 -2.8627 -0.0024 8 6 3.0527 -3.2856 -0.0030 9 6 2.7498 -4.7337 -0.0030 10 8 3.6558 -5.5440 -0.0029 11 7 1.4694 -5.1543 -0.0030 12 6 1.1816 -6.5182 -0.1131 13 6 1.9966 -7.3415 -0.8810 14 6 1.7157 -8.6901 -0.9858 15 6 0.6179 -9.2227 -0.3374 16 6 -0.2037 -8.4041 0.4273 17 8 -1.2822 -8.9281 1.0636 18 6 -2.1060 -8.0615 1.6868 19 1 -1.9428 -6.9982 1.5922 20 6 -3.1626 -8.5356 2.4492 21 7 -3.3611 -9.8309 2.5649 22 14 -4.3042 -7.3350 3.3121 23 1 -4.9538 -6.4583 2.3046 24 1 -5.3444 -8.0892 4.0568 25 1 -3.5219 -6.5030 4.2613 26 6 0.0789 -7.0501 0.5395 27 7 2.0552 -2.4111 -0.0026 28 6 2.2815 -1.1117 -0.0011 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 1.9219 2.1186 -0.0004 33 1 5.6912 -1.1740 -0.0019 34 1 5.1850 -3.5879 -0.0073 35 1 0.7476 -4.5109 0.0732 36 1 2.8529 -6.9275 -1.3925 37 1 2.3529 -9.3287 -1.5797 38 1 0.3985 -10.2765 -0.4250 39 1 -4.1006 -10.1626 3.0979 40 1 -0.5582 -6.4119 1.1338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630259891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:43 Heat of formation + Delta-G solvation = 69.238709 kcal Electronic energy + Delta-G solvation = -27284.015490 eV Core-core repulsion = 23259.302608 eV Total energy + Delta-G solvation = -4024.712883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.76431 -40.41785 -38.96369 -38.09371 -36.40716 -35.00141 -34.27709 -32.31236 -32.20843 -30.58904 -29.26544 -28.46665 -27.59842 -25.49793 -25.10044 -23.60898 -22.12343 -21.81406 -21.26018 -20.28842 -18.58772 -18.25909 -17.77956 -17.57399 -17.08210 -16.57698 -15.61109 -15.33229 -15.24244 -15.02681 -14.90953 -14.45603 -14.22417 -14.00215 -13.79928 -13.61683 -13.56569 -13.30711 -13.06976 -12.93960 -12.69025 -12.32857 -11.77703 -11.58173 -11.40545 -11.23021 -11.17700 -10.98114 -10.83168 -10.48861 -10.20192 -9.75030 -9.59449 -9.41872 -9.14039 -8.91823 -8.81650 -7.74237 -7.16951 -6.45783 -4.05546 0.08217 0.87449 1.84833 1.90410 2.24619 2.39097 2.86941 3.07309 3.10108 3.12268 3.14512 3.57682 3.63095 3.80885 3.94706 4.12282 4.36900 4.57129 4.59383 4.67128 4.71674 4.85623 5.06283 5.09071 5.18021 5.27086 5.49156 5.64596 5.74045 5.76511 5.97876 6.06313 6.16308 6.23062 6.26478 6.42195 6.61645 6.93040 6.95883 7.09021 7.24229 7.27600 7.30315 7.40981 7.68910 7.78613 7.98156 8.21303 8.99443 9.69757 10.72219 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.002929 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.996666 B = 9556.623460 C =11650.609400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.483 5.483 3 C 0.282 3.718 4 N -0.492 5.492 5 C 0.023 3.977 6 C -0.026 4.026 7 C -0.123 4.123 8 C 0.124 3.876 9 C 0.572 3.428 10 O -0.507 6.507 11 N -0.647 5.647 12 C 0.178 3.822 13 C -0.205 4.205 14 C -0.062 4.062 15 C -0.198 4.198 16 C 0.168 3.832 17 O -0.175 6.175 18 C -0.392 4.392 19 H 0.089 0.911 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.939 3.061 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.253 4.253 27 N -0.451 5.451 28 C 0.234 3.766 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.224 0.776 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.415 0.585 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.271 0.729 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.952 21.861 -5.710 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.176 5.176 3 C -0.004 4.004 4 N -0.211 5.211 5 C -0.099 4.099 6 C -0.054 4.054 7 C -0.147 4.147 8 C -0.025 4.025 9 C 0.357 3.643 10 O -0.381 6.381 11 N -0.291 5.291 12 C 0.085 3.915 13 C -0.225 4.225 14 C -0.081 4.081 15 C -0.218 4.218 16 C 0.114 3.886 17 O -0.079 6.079 18 C -0.469 4.469 19 H 0.107 0.893 20 C -0.164 4.164 21 N -0.497 5.497 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.274 4.274 27 N -0.167 5.167 28 C -0.003 4.003 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.240 0.760 33 H 0.168 0.832 34 H 0.177 0.823 35 H 0.252 0.748 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.001 21.180 -5.567 23.677 hybrid contribution -1.048 0.995 0.580 1.557 sum 7.953 22.175 -4.987 24.080 Atomic orbital electron populations 1.22118 0.74762 1.05358 1.04132 1.45096 1.08001 1.04398 1.60057 1.25543 0.84915 0.93204 0.96740 1.70459 1.18192 1.10466 1.21978 1.19872 0.93279 0.91503 1.05218 1.20464 0.98534 0.90591 0.95796 1.21580 0.97062 0.96167 0.99842 1.20879 0.89366 0.92340 0.99917 1.17716 0.83214 0.86173 0.77229 1.90832 1.45415 1.53542 1.48261 1.43281 1.07963 1.07413 1.70472 1.17410 0.95925 0.81825 0.96349 1.20546 1.02920 0.93949 1.05132 1.20526 0.95629 0.94230 0.97733 1.20268 0.97912 0.99763 1.03876 1.19079 0.87653 0.90730 0.91169 1.84023 1.29489 1.35229 1.59113 1.21220 1.07106 0.89165 1.29383 0.89318 1.25264 0.97570 0.96853 0.96738 1.70025 1.29774 1.12112 1.37784 0.85813 0.79286 0.79232 0.79265 1.19539 1.20241 1.19588 1.20815 1.02124 0.96324 1.08146 1.66144 1.36881 1.00009 1.13678 1.18823 0.89329 0.87560 1.04586 0.90217 0.88826 0.88972 0.75958 0.83205 0.82252 0.74823 0.86269 0.86487 0.86304 0.91953 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.19 59.85 0.67 1.04 16 2 N -0.48 -3.97 3.20 -124.97 -0.40 -4.37 16 3 C 0.28 1.96 12.49 -89.73 -1.12 0.84 16 4 N -0.49 -5.13 11.27 -11.93 -0.13 -5.26 16 5 C 0.02 0.27 7.25 -84.57 -0.61 -0.35 16 6 C -0.03 -0.27 10.16 -39.41 -0.40 -0.67 16 7 C -0.12 -1.38 9.55 -39.47 -0.38 -1.76 16 8 C 0.12 1.67 6.74 -82.97 -0.56 1.11 16 9 C 0.57 9.15 7.53 -12.29 -0.09 9.05 16 10 O -0.51 -9.22 14.00 5.32 0.07 -9.14 16 11 N -0.65 -10.67 5.32 -10.71 -0.06 -10.72 16 12 C 0.18 3.48 6.26 -83.75 -0.52 2.95 16 13 C -0.20 -3.94 8.65 -39.34 -0.34 -4.28 16 14 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 15 C -0.20 -4.25 9.99 -39.35 -0.39 -4.64 16 16 C 0.17 4.07 6.64 -39.13 -0.26 3.81 16 17 O -0.18 -4.97 9.76 0.04 0.00 -4.97 16 18 C -0.39 -10.85 9.44 30.88 0.29 -10.56 16 19 H 0.09 2.25 5.30 -52.49 -0.28 1.97 16 20 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 22 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.25 -5.53 9.05 -39.20 -0.35 -5.88 16 27 N -0.45 -5.85 9.55 -8.83 -0.08 -5.93 16 28 C 0.23 2.75 8.01 -155.74 -1.25 1.50 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.22 0.37 8.06 -52.49 -0.42 -0.06 16 33 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.16 1.59 7.61 -52.49 -0.40 1.19 16 35 H 0.42 6.04 8.13 -40.82 -0.33 5.70 16 36 H 0.12 2.20 6.45 -52.48 -0.34 1.87 16 37 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.13 2.80 5.71 -52.48 -0.30 2.50 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -35.53 354.29 -9.08 -44.61 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.74 Total: 8.04 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -5.82 Total: -8.40 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.08 Total: -50.68 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.07 Total: -14.11 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.53 -9.08 -44.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630259891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.852 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds