Wall clock time and date at job start Tue Mar 31 2020 20:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35998 * 126.28923 * 2 1 4 4 N 1.30217 * 110.17588 * 180.02562 * 3 2 1 5 5 C 1.35437 * 109.57926 * 0.02562 * 4 3 2 6 6 C 1.39902 * 133.80949 * 180.02562 * 5 4 3 7 7 C 1.36981 * 118.35931 * 179.97438 * 6 5 4 8 8 C 1.39748 * 119.59820 * 0.02562 * 7 6 5 9 9 C 1.47938 * 119.42655 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00076 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99922 * 179.97438 * 9 8 7 12 12 C 1.39829 * 119.99977 * 174.78099 * 11 9 8 13 13 C 1.38983 * 120.04163 * 326.13277 * 12 11 9 14 14 C 1.38151 * 120.06539 * 179.74213 * 13 12 11 15 15 C 1.38174 * 120.14085 * 0.55210 * 14 13 12 16 16 C 1.38916 * 120.07483 * 359.70516 * 15 14 13 17 17 O 1.35748 * 120.03116 * 179.97438 * 16 15 14 18 18 C 1.34836 * 116.99738 * 185.91973 * 17 16 15 19 19 H 1.07994 * 120.00067 * 5.40083 * 18 17 16 20 20 C 1.38647 * 119.99591 * 185.39815 * 18 17 16 21 21 N 1.31555 * 120.00291 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99868 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47180 * 60.00066 * 22 20 18 24 24 H 1.48503 * 109.47280 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47177 * 300.00179 * 22 20 18 26 26 C 1.38733 * 120.03515 * 146.40425 * 12 11 9 27 27 N 1.32657 * 121.14304 * 359.97438 * 8 7 6 28 28 C 1.31892 * 121.36460 * 359.97438 * 27 8 7 29 29 H 1.09000 * 109.47408 * 89.97855 * 1 2 3 30 30 H 1.09005 * 109.47123 * 209.97712 * 1 2 3 31 31 H 1.09005 * 109.47593 * 329.97818 * 1 2 3 32 32 H 1.08001 * 124.91279 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.81490 * 359.97172 * 6 5 4 34 34 H 1.08002 * 120.19699 * 179.71996 * 7 6 5 35 35 H 0.97000 * 119.99722 * 354.78967 * 11 9 8 36 36 H 1.08006 * 119.96702 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.92895 * 180.25438 * 14 13 12 38 38 H 1.08001 * 119.96327 * 179.71754 * 15 14 13 39 39 H 0.97004 * 119.99971 * 180.02562 * 21 20 18 40 40 H 1.08004 * 120.07470 * 359.95853 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0962 0.0000 4 7 3.5209 0.7348 -0.0005 5 6 3.6028 -0.6171 -0.0015 6 6 4.6691 -1.5228 -0.0019 7 6 4.3847 -2.8627 -0.0024 8 6 3.0527 -3.2856 -0.0030 9 6 2.7498 -4.7337 -0.0030 10 8 3.6558 -5.5440 -0.0029 11 7 1.4694 -5.1543 -0.0030 12 6 1.1816 -6.5182 -0.1131 13 6 1.9966 -7.3415 -0.8810 14 6 1.7157 -8.6901 -0.9858 15 6 0.6179 -9.2227 -0.3374 16 6 -0.2037 -8.4041 0.4273 17 8 -1.2822 -8.9281 1.0636 18 6 -2.1060 -8.0615 1.6868 19 1 -1.9428 -6.9982 1.5922 20 6 -3.1626 -8.5356 2.4492 21 7 -3.3611 -9.8309 2.5649 22 14 -4.3042 -7.3350 3.3121 23 1 -4.9538 -6.4583 2.3046 24 1 -5.3444 -8.0892 4.0568 25 1 -3.5219 -6.5030 4.2613 26 6 0.0789 -7.0501 0.5395 27 7 2.0552 -2.4111 -0.0026 28 6 2.2815 -1.1117 -0.0011 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 1.9219 2.1186 -0.0004 33 1 5.6912 -1.1740 -0.0019 34 1 5.1850 -3.5879 -0.0073 35 1 0.7476 -4.5109 0.0732 36 1 2.8529 -6.9275 -1.3925 37 1 2.3529 -9.3287 -1.5797 38 1 0.3985 -10.2765 -0.4250 39 1 -4.1006 -10.1626 3.0979 40 1 -0.5582 -6.4119 1.1338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630259891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:43 Heat of formation + Delta-G solvation = 46.590700 kcal Electronic energy + Delta-G solvation = -27284.997582 eV Core-core repulsion = 23259.302608 eV Total energy + Delta-G solvation = -4025.694974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49000 -41.74670 -40.52680 -39.23309 -38.06111 -35.89163 -35.51951 -34.24611 -33.05726 -31.64796 -30.84676 -30.01069 -28.10686 -27.35526 -26.18637 -24.50229 -23.54537 -23.35583 -21.93573 -21.72173 -20.03201 -19.56194 -18.94742 -18.85977 -18.11930 -17.29836 -17.14877 -16.86891 -16.53080 -16.25075 -15.94866 -15.73988 -15.69387 -15.50415 -15.21653 -14.62338 -14.51939 -14.38589 -14.20063 -14.00520 -13.61879 -13.51806 -13.41387 -13.22792 -12.83076 -12.64455 -12.49480 -12.18095 -12.15556 -11.91722 -11.59197 -11.39060 -11.17384 -10.74523 -10.46470 -9.87845 -9.73220 -9.38386 -8.90522 -8.47090 -6.15986 -0.79233 0.04675 0.39898 0.67840 1.22179 1.33659 1.34557 1.45797 1.51024 1.82558 1.86666 2.17365 2.66605 2.75049 2.83639 3.14636 3.16773 3.40814 3.47849 3.64307 3.82647 4.07688 4.10340 4.17363 4.30637 4.40791 4.42279 4.44079 4.60760 4.65994 4.73013 4.77002 4.89993 5.01380 5.07176 5.09478 5.33655 5.35832 5.42212 5.63226 5.65409 5.82995 6.00491 6.11094 6.25170 6.50535 6.57014 6.89679 6.97044 7.76011 8.75678 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.002929 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.996666 B = 9556.623460 C =11650.609400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.483 5.483 3 C 0.308 3.692 4 N -0.526 5.526 5 C 0.016 3.984 6 C -0.027 4.027 7 C -0.119 4.119 8 C 0.098 3.902 9 C 0.576 3.424 10 O -0.532 6.532 11 N -0.646 5.646 12 C 0.182 3.818 13 C -0.197 4.197 14 C -0.048 4.048 15 C -0.210 4.210 16 C 0.135 3.865 17 O -0.224 6.224 18 C -0.415 4.415 19 H 0.101 0.899 20 C -0.021 4.021 21 N -0.919 5.919 22 Si 1.017 2.983 23 H -0.254 1.254 24 H -0.272 1.272 25 H -0.259 1.259 26 C -0.258 4.258 27 N -0.460 5.460 28 C 0.209 3.791 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.278 0.722 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.423 0.577 36 H 0.134 0.866 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.273 0.727 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 25.749 -6.272 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.175 5.175 3 C 0.023 3.977 4 N -0.246 5.246 5 C -0.106 4.106 6 C -0.054 4.054 7 C -0.143 4.143 8 C -0.050 4.050 9 C 0.363 3.637 10 O -0.407 6.407 11 N -0.290 5.290 12 C 0.088 3.912 13 C -0.218 4.218 14 C -0.067 4.067 15 C -0.229 4.229 16 C 0.084 3.916 17 O -0.130 6.130 18 C -0.491 4.491 19 H 0.118 0.882 20 C -0.219 4.219 21 N -0.557 5.557 22 Si 0.836 3.164 23 H -0.178 1.178 24 H -0.196 1.196 25 H -0.184 1.184 26 C -0.280 4.280 27 N -0.176 5.176 28 C -0.030 4.030 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.149 0.851 32 H 0.293 0.707 33 H 0.194 0.806 34 H 0.186 0.814 35 H 0.261 0.739 36 H 0.151 0.849 37 H 0.177 0.823 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.747 25.105 -6.162 27.627 hybrid contribution -1.060 0.022 0.593 1.214 sum 8.688 25.128 -5.569 27.164 Atomic orbital electron populations 1.22385 0.72773 1.06483 1.05129 1.45454 1.09218 1.03536 1.59300 1.26691 0.83808 0.94656 0.92591 1.70503 1.20188 1.09608 1.24259 1.20250 0.93574 0.92434 1.04341 1.20740 0.99689 0.89933 0.95016 1.21653 0.96254 0.96939 0.99450 1.20491 0.90457 0.90859 1.03165 1.18077 0.82354 0.87351 0.75895 1.90799 1.45885 1.54646 1.49387 1.43265 1.08822 1.06257 1.70656 1.17470 0.94934 0.83409 0.95360 1.20885 1.02687 0.94195 1.04039 1.20944 0.94611 0.94545 0.96551 1.20526 0.98466 0.99984 1.03973 1.19597 0.87803 0.92239 0.91987 1.83988 1.31352 1.36496 1.61183 1.21747 1.07735 0.89895 1.29694 0.88180 1.26574 0.99110 0.98954 0.97224 1.70176 1.31187 1.14585 1.39717 0.84679 0.76790 0.76732 0.78218 1.17831 1.19648 1.18374 1.20814 1.02989 0.95571 1.08582 1.66003 1.36987 1.00827 1.13756 1.19167 0.90625 0.87764 1.05446 0.89279 0.90447 0.85144 0.70685 0.80629 0.81415 0.73858 0.84850 0.82350 0.85926 0.91777 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.19 127.77 1.43 1.91 16 2 N -0.48 -6.59 3.20 -549.30 -1.76 -8.35 16 3 C 0.31 3.08 12.49 180.04 2.25 5.33 16 4 N -0.53 -9.52 11.27 -191.64 -2.16 -11.68 16 5 C 0.02 0.35 7.25 39.69 0.29 0.63 16 6 C -0.03 -0.50 10.16 22.38 0.23 -0.28 16 7 C -0.12 -2.58 9.55 22.34 0.21 -2.36 16 8 C 0.10 2.59 6.74 41.96 0.28 2.87 16 9 C 0.58 18.25 7.53 86.81 0.65 18.90 16 10 O -0.53 -19.02 14.00 -3.87 -0.05 -19.08 16 11 N -0.65 -21.17 5.32 -306.08 -1.63 -22.80 16 12 C 0.18 7.11 6.26 38.16 0.24 7.35 16 13 C -0.20 -7.33 8.65 22.43 0.19 -7.14 16 14 C -0.05 -1.73 10.03 22.23 0.22 -1.51 16 15 C -0.21 -9.09 9.99 22.42 0.22 -8.87 16 16 C 0.14 6.81 6.64 22.56 0.15 6.96 16 17 O -0.22 -13.43 9.76 -22.78 -0.22 -13.65 16 18 C -0.41 -23.95 9.44 67.92 0.64 -23.31 16 19 H 0.10 5.27 5.30 -2.91 -0.02 5.26 16 20 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 21 N -0.92 -56.08 13.67 21.61 0.30 -55.78 16 22 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 23 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 C -0.26 -11.59 9.05 22.52 0.20 -11.39 16 27 N -0.46 -11.64 9.55 -181.85 -1.74 -13.38 16 28 C 0.21 4.59 8.01 134.06 1.07 5.66 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.13 -0.14 8.14 -2.38 -0.02 -0.16 16 32 H 0.28 -0.70 8.06 -2.91 -0.02 -0.73 16 33 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.17 3.21 7.61 -2.91 -0.02 3.19 16 35 H 0.42 12.35 8.13 -92.71 -0.75 11.60 16 36 H 0.13 4.66 6.45 -2.91 -0.02 4.64 16 37 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 38 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 39 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.13 5.63 5.71 -2.91 -0.02 5.61 16 Total: -1.00 -82.23 354.29 3.89 -78.34 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.37 Total: 28.20 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 8.76 Total: -5.95 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -6.99 Total: -112.00 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.28 Total: -32.73 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -82.23 3.89 -78.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630259891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.929 kcal (2) G-P(sol) polarization free energy of solvation -82.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds