Wall clock time and date at job start Tue Mar 31 2020 20:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 119.99887 * 2 1 4 4 O 1.21629 * 120.00088 * 185.73576 * 3 2 1 5 5 C 1.47111 * 119.99985 * 5.73580 * 3 2 1 6 6 C 1.38389 * 127.99680 * 186.69249 * 5 3 2 7 7 C 1.37580 * 111.25944 * 179.82910 * 6 5 3 8 8 N 1.29552 * 117.94604 * 0.50355 * 7 6 5 9 9 S 1.56307 * 110.38682 * 359.71411 * 8 7 6 10 10 C 1.46494 * 120.00419 * 180.02562 * 2 1 3 11 11 H 1.08997 * 110.88056 * 182.38566 * 10 2 1 12 12 C 1.55147 * 110.98889 * 58.54113 * 10 2 1 13 13 C 1.54323 * 103.01880 * 206.25655 * 12 10 2 14 14 N 1.47449 * 107.23273 * 22.28710 * 13 12 10 15 15 C 1.46896 * 111.00015 * 123.25709 * 14 13 12 16 16 C 1.50693 * 109.47309 * 69.87444 * 15 14 13 17 17 O 1.21299 * 120.00021 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00151 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00217 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00084 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00424 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00031 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99704 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47404 * 89.99763 * 23 21 19 25 25 H 1.48497 * 109.47004 * 209.99926 * 23 21 19 26 26 H 1.48501 * 109.46751 * 329.99413 * 23 21 19 27 27 C 1.47852 * 108.56541 * 0.98726 * 14 13 12 28 28 H 1.09002 * 109.46767 * 275.49132 * 1 2 3 29 29 H 1.09001 * 109.47303 * 35.48722 * 1 2 3 30 30 H 1.08997 * 109.47036 * 155.49599 * 1 2 3 31 31 H 1.07999 * 124.36178 * 0.02562 * 6 5 3 32 32 H 1.07991 * 121.02235 * 180.23999 * 7 6 5 33 33 H 1.08997 * 110.70457 * 87.87706 * 12 10 2 34 34 H 1.09001 * 110.85680 * 324.71234 * 12 10 2 35 35 H 1.08995 * 109.88848 * 262.88050 * 13 12 10 36 36 H 1.09001 * 109.88854 * 141.68670 * 13 12 10 37 37 H 1.09006 * 109.46887 * 189.87618 * 15 14 13 38 38 H 1.09004 * 109.46984 * 309.87155 * 15 14 13 39 39 H 0.97001 * 120.00317 * 0.02562 * 18 16 15 40 40 H 0.97006 * 119.99607 * 180.02562 * 22 21 19 41 41 H 1.08991 * 110.36995 * 94.73472 * 27 14 13 42 42 H 1.08999 * 110.36757 * 217.07674 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1699 -0.1053 5 6 1.4088 2.4380 0.1273 6 6 1.9107 3.7233 0.0205 7 6 0.9202 4.6618 0.1964 8 7 -0.2809 4.2394 0.4356 9 16 -0.3137 2.6768 0.4605 10 6 2.1976 -1.2686 -0.0006 11 1 3.2730 -1.0963 0.0419 12 6 1.8208 -2.1273 -1.2366 13 6 2.0929 -3.5680 -0.7549 14 7 2.0454 -3.5523 0.7187 15 6 1.0505 -4.5079 1.2236 16 6 1.5343 -5.9137 0.9777 17 8 2.6027 -6.1012 0.4348 18 7 0.7795 -6.9627 1.3601 19 6 1.2193 -8.2416 1.1360 20 1 2.1706 -8.4086 0.6525 21 6 0.4414 -9.3232 1.5307 22 7 0.8628 -10.5491 1.3154 23 14 -1.2042 -9.0345 2.3662 24 1 -2.2741 -8.9576 1.3393 25 1 -1.4906 -10.1560 3.2965 26 1 -1.1560 -7.7602 3.1273 27 6 1.7339 -2.1776 1.1650 28 1 -0.3633 0.0983 1.0230 29 1 -0.3634 0.8368 -0.5966 30 1 -0.3633 -0.9351 -0.4262 31 1 2.9457 3.9589 -0.1787 32 1 1.1382 5.7180 0.1410 33 1 2.4561 -1.8788 -2.0866 34 1 0.7691 -1.9986 -1.4925 35 1 3.0781 -3.8914 -1.0908 36 1 1.3273 -4.2397 -1.1434 37 1 0.9093 -4.3540 2.2935 38 1 0.1035 -4.3537 0.7063 39 1 -0.0754 -6.8128 1.7933 40 1 0.3195 -11.3041 1.5907 41 1 0.6624 -2.0659 1.3301 42 1 2.2858 -1.9397 2.0743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665637415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:03 Heat of formation + Delta-G solvation = 8.660681 kcal Electronic energy + Delta-G solvation = -26393.198210 eV Core-core repulsion = 22501.302418 eV Total energy + Delta-G solvation = -3891.895792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68778 -39.64221 -38.92049 -37.70721 -35.62146 -33.93924 -32.34453 -31.69843 -31.11882 -28.90938 -27.70720 -27.16448 -25.94636 -24.10972 -22.87232 -21.09185 -20.73673 -19.71161 -19.32353 -18.97553 -18.24442 -17.20650 -16.98943 -16.13915 -15.99097 -15.69889 -15.56320 -14.88609 -14.74932 -14.56469 -14.13573 -13.97634 -13.82281 -13.65005 -13.44713 -13.32321 -13.03642 -12.90230 -12.43331 -12.33721 -11.90929 -11.80953 -11.79787 -11.54317 -11.33720 -11.10989 -10.99946 -10.71018 -10.61012 -10.42454 -10.17910 -9.98183 -9.56805 -9.32806 -9.07892 -8.60313 -8.18497 -8.04823 -6.31286 -3.82658 -0.18095 0.77704 1.43330 1.74867 2.34410 2.63284 3.01063 3.04745 3.13784 3.73352 3.87744 3.96886 4.09434 4.36961 4.42631 4.49199 4.52905 4.60772 4.76707 4.86612 4.92253 5.03849 5.13158 5.16681 5.19927 5.25655 5.35444 5.48133 5.59856 5.63266 5.75363 5.81025 5.86767 5.98375 6.02208 6.08582 6.34646 6.80894 7.05620 7.08043 7.57970 7.61094 8.14157 8.60058 8.95342 9.42184 9.83413 10.81896 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026074 B = 0.002159 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.619757 B =12962.990257 C =13746.384298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.598 5.598 3 C 0.598 3.402 4 O -0.518 6.518 5 C -0.272 4.272 6 C -0.108 4.108 7 C 0.060 3.940 8 N -0.537 5.537 9 S 0.433 5.567 10 C 0.134 3.866 11 H 0.122 0.878 12 C -0.155 4.155 13 C 0.057 3.943 14 N -0.502 5.502 15 C 0.039 3.961 16 C 0.452 3.548 17 O -0.556 6.556 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.034 3.966 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.176 0.824 32 H 0.181 0.819 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.050 0.950 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 28.852 -1.925 29.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.331 5.331 3 C 0.384 3.616 4 O -0.394 6.394 5 C -0.406 4.406 6 C -0.144 4.144 7 C -0.132 4.132 8 N -0.366 5.366 9 S 0.589 5.411 10 C 0.031 3.969 11 H 0.140 0.860 12 C -0.194 4.194 13 C -0.070 4.070 14 N -0.226 5.226 15 C -0.093 4.093 16 C 0.237 3.763 17 O -0.437 6.437 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.163 4.163 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.094 4.094 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.193 0.807 32 H 0.198 0.802 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.832 28.048 -1.706 28.918 hybrid contribution -0.607 0.925 0.113 1.112 sum -7.439 28.972 -1.593 29.954 Atomic orbital electron populations 1.22081 0.79811 1.04055 1.02862 1.47541 1.06787 1.05649 1.73101 1.16754 0.86390 0.81660 0.76790 1.90849 1.12956 1.86448 1.49124 1.26840 1.01989 0.98131 1.13590 1.22152 1.02566 0.89853 0.99828 1.22261 0.86230 1.03018 1.01695 1.72119 1.27066 1.14970 1.22413 1.82097 1.03930 0.98176 1.56917 1.22354 0.98533 0.80920 0.95138 0.85999 1.23242 1.01958 0.96054 0.98152 1.22727 1.03608 0.93857 0.86842 1.63212 1.46692 1.03098 1.09608 1.22123 0.93058 0.92931 1.01177 1.19617 0.86640 0.85181 0.84816 1.90574 1.22552 1.85261 1.45348 1.42205 1.19483 1.06502 1.55093 1.19421 1.07086 0.79347 1.37353 0.86282 1.25041 0.98349 0.94977 0.97890 1.69622 1.38150 0.97774 1.46642 0.86673 0.84238 0.78434 0.80034 1.19718 1.20201 1.19505 1.23371 0.99559 0.88259 0.98261 0.91060 0.90891 0.88624 0.80691 0.80211 0.90054 0.91120 0.89268 0.92117 0.89225 0.93161 0.79802 0.91641 0.93157 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 7.54 59.85 0.45 0.78 16 2 N -0.60 -5.40 2.91 -172.87 -0.50 -5.90 16 3 C 0.60 6.39 7.65 -12.66 -0.10 6.30 16 4 O -0.52 -7.33 16.37 5.25 0.09 -7.25 16 5 C -0.27 -2.31 6.42 -35.93 -0.23 -2.54 16 6 C -0.11 -0.79 10.41 -39.77 -0.41 -1.20 16 7 C 0.06 0.40 11.15 -18.75 -0.21 0.19 16 8 N -0.54 -4.47 11.29 21.64 0.24 -4.22 16 9 S 0.43 2.88 18.80 -107.50 -2.02 0.86 16 10 C 0.13 1.43 3.43 -65.79 -0.23 1.21 16 11 H 0.12 1.55 7.03 -51.93 -0.37 1.19 16 12 C -0.15 -1.62 6.48 -24.90 -0.16 -1.78 16 13 C 0.06 0.82 5.65 -2.83 -0.02 0.80 16 14 N -0.50 -7.53 4.85 -232.68 -1.13 -8.66 16 15 C 0.04 0.61 5.03 -4.98 -0.03 0.59 16 16 C 0.45 9.98 7.43 -10.99 -0.08 9.90 16 17 O -0.56 -14.62 15.12 5.54 0.08 -14.54 16 18 N -0.59 -13.79 5.09 -10.96 -0.06 -13.85 16 19 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 21 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 22 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 23 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 27 C 0.03 0.38 6.25 -2.29 -0.01 0.37 16 28 H 0.07 0.31 7.68 -51.93 -0.40 -0.09 16 29 H 0.07 0.35 5.18 -30.93 -0.16 0.19 16 30 H 0.10 0.48 6.34 -51.93 -0.33 0.15 16 31 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.62 6.38 -51.93 -0.33 0.29 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.06 0.91 7.31 -51.93 -0.38 0.54 16 37 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 38 H 0.05 0.67 7.96 -51.93 -0.41 0.25 16 39 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.05 0.46 6.72 -51.93 -0.35 0.11 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -35.42 354.60 -8.21 -43.63 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.05 Total: 8.09 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.27 Total: 6.99 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.67 Total: -57.43 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.17 Total: -21.79 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.02 Total: 0.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.42 -8.21 -43.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665637415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.291 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds