Wall clock time and date at job start Tue Mar 31 2020 20:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 119.99887 * 2 1 4 4 O 1.21629 * 120.00088 * 185.73576 * 3 2 1 5 5 C 1.47111 * 119.99985 * 5.73580 * 3 2 1 6 6 C 1.38389 * 127.99680 * 186.69249 * 5 3 2 7 7 C 1.37580 * 111.25944 * 179.82910 * 6 5 3 8 8 N 1.29552 * 117.94604 * 0.50355 * 7 6 5 9 9 S 1.56307 * 110.38682 * 359.71411 * 8 7 6 10 10 C 1.46494 * 120.00419 * 180.02562 * 2 1 3 11 11 H 1.08997 * 110.88056 * 182.38566 * 10 2 1 12 12 C 1.55147 * 110.98889 * 58.54113 * 10 2 1 13 13 C 1.54323 * 103.01880 * 206.25655 * 12 10 2 14 14 N 1.47449 * 107.23273 * 22.28710 * 13 12 10 15 15 C 1.46896 * 111.00015 * 123.25709 * 14 13 12 16 16 C 1.50693 * 109.47309 * 69.87444 * 15 14 13 17 17 O 1.21299 * 120.00021 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00151 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00217 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00084 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00424 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00031 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99704 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47404 * 89.99763 * 23 21 19 25 25 H 1.48497 * 109.47004 * 209.99926 * 23 21 19 26 26 H 1.48501 * 109.46751 * 329.99413 * 23 21 19 27 27 C 1.47852 * 108.56541 * 0.98726 * 14 13 12 28 28 H 1.09002 * 109.46767 * 275.49132 * 1 2 3 29 29 H 1.09001 * 109.47303 * 35.48722 * 1 2 3 30 30 H 1.08997 * 109.47036 * 155.49599 * 1 2 3 31 31 H 1.07999 * 124.36178 * 0.02562 * 6 5 3 32 32 H 1.07991 * 121.02235 * 180.23999 * 7 6 5 33 33 H 1.08997 * 110.70457 * 87.87706 * 12 10 2 34 34 H 1.09001 * 110.85680 * 324.71234 * 12 10 2 35 35 H 1.08995 * 109.88848 * 262.88050 * 13 12 10 36 36 H 1.09001 * 109.88854 * 141.68670 * 13 12 10 37 37 H 1.09006 * 109.46887 * 189.87618 * 15 14 13 38 38 H 1.09004 * 109.46984 * 309.87155 * 15 14 13 39 39 H 0.97001 * 120.00317 * 0.02562 * 18 16 15 40 40 H 0.97006 * 119.99607 * 180.02562 * 22 21 19 41 41 H 1.08991 * 110.36995 * 94.73472 * 27 14 13 42 42 H 1.08999 * 110.36757 * 217.07674 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1699 -0.1053 5 6 1.4088 2.4380 0.1273 6 6 1.9107 3.7233 0.0205 7 6 0.9202 4.6618 0.1964 8 7 -0.2809 4.2394 0.4356 9 16 -0.3137 2.6768 0.4605 10 6 2.1976 -1.2686 -0.0006 11 1 3.2730 -1.0963 0.0419 12 6 1.8208 -2.1273 -1.2366 13 6 2.0929 -3.5680 -0.7549 14 7 2.0454 -3.5523 0.7187 15 6 1.0505 -4.5079 1.2236 16 6 1.5343 -5.9137 0.9777 17 8 2.6027 -6.1012 0.4348 18 7 0.7795 -6.9627 1.3601 19 6 1.2193 -8.2416 1.1360 20 1 2.1706 -8.4086 0.6525 21 6 0.4414 -9.3232 1.5307 22 7 0.8628 -10.5491 1.3154 23 14 -1.2042 -9.0345 2.3662 24 1 -2.2741 -8.9576 1.3393 25 1 -1.4906 -10.1560 3.2965 26 1 -1.1560 -7.7602 3.1273 27 6 1.7339 -2.1776 1.1650 28 1 -0.3633 0.0983 1.0230 29 1 -0.3634 0.8368 -0.5966 30 1 -0.3633 -0.9351 -0.4262 31 1 2.9457 3.9589 -0.1787 32 1 1.1382 5.7180 0.1410 33 1 2.4561 -1.8788 -2.0866 34 1 0.7691 -1.9986 -1.4925 35 1 3.0781 -3.8914 -1.0908 36 1 1.3273 -4.2397 -1.1434 37 1 0.9093 -4.3540 2.2935 38 1 0.1035 -4.3537 0.7063 39 1 -0.0754 -6.8128 1.7933 40 1 0.3195 -11.3041 1.5907 41 1 0.6624 -2.0659 1.3301 42 1 2.2858 -1.9397 2.0743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665637415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:03 Heat of formation + Delta-G solvation = -20.261361 kcal Electronic energy + Delta-G solvation = -26394.452364 eV Core-core repulsion = 22501.302418 eV Total energy + Delta-G solvation = -3893.149946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51156 -40.56094 -39.99054 -39.02869 -36.53468 -35.87410 -33.74672 -33.11106 -32.03640 -29.83575 -28.56991 -28.17988 -26.80164 -25.73247 -23.57011 -22.27819 -21.51007 -21.15282 -20.37306 -20.08679 -19.58868 -17.85129 -17.77709 -17.66941 -16.82502 -16.76333 -16.67608 -16.41453 -15.64099 -15.41311 -15.31886 -15.12610 -14.67371 -14.61064 -14.50254 -14.33631 -14.22068 -14.05017 -13.77992 -13.47081 -13.33627 -12.94629 -12.67479 -12.55608 -12.38483 -12.35067 -12.27318 -11.95748 -11.70781 -11.50209 -11.46706 -11.21627 -10.79693 -10.39090 -10.21263 -9.91386 -9.67614 -9.20776 -8.38331 -5.99142 -0.77139 0.23429 0.92487 1.19544 1.32235 1.38148 1.47233 1.63082 1.92687 2.00732 2.25936 2.70882 3.17944 3.23684 3.27361 3.59018 3.66903 3.97524 3.99344 4.02800 4.09515 4.13476 4.25840 4.32395 4.39292 4.44912 4.50363 4.65991 4.69245 4.71434 4.87640 4.89936 4.95056 4.98256 5.17996 5.32912 5.53330 5.55747 5.91047 5.99678 6.07760 6.10831 6.63343 6.85984 6.92350 7.43865 8.02283 8.79483 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026074 B = 0.002159 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.619757 B =12962.990257 C =13746.384298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.592 5.592 3 C 0.595 3.405 4 O -0.566 6.566 5 C -0.296 4.296 6 C -0.108 4.108 7 C 0.062 3.938 8 N -0.565 5.565 9 S 0.483 5.517 10 C 0.140 3.860 11 H 0.093 0.907 12 C -0.139 4.139 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.052 3.948 16 C 0.450 3.550 17 O -0.609 6.609 18 N -0.593 5.593 19 C -0.326 4.326 20 H 0.052 0.948 21 C -0.019 4.019 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.256 1.256 25 H -0.278 1.278 26 H -0.228 1.228 27 C 0.042 3.958 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.181 0.819 32 H 0.206 0.794 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.390 0.610 40 H 0.278 0.722 41 H 0.086 0.914 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 31.815 -0.491 33.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.323 5.323 3 C 0.383 3.617 4 O -0.445 6.445 5 C -0.430 4.430 6 C -0.145 4.145 7 C -0.129 4.129 8 N -0.395 5.395 9 S 0.639 5.361 10 C 0.035 3.965 11 H 0.111 0.889 12 C -0.178 4.178 13 C -0.068 4.068 14 N -0.258 5.258 15 C -0.079 4.079 16 C 0.237 3.763 17 O -0.493 6.493 18 N -0.235 5.235 19 C -0.455 4.455 20 H 0.070 0.930 21 C -0.217 4.217 22 N -0.578 5.578 23 Si 0.787 3.213 24 H -0.180 1.180 25 H -0.204 1.204 26 H -0.151 1.151 27 C -0.085 4.085 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.198 0.802 32 H 0.223 0.777 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.226 0.774 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.153 31.047 -0.267 32.990 hybrid contribution 0.847 0.011 -0.401 0.937 sum -10.307 31.057 -0.668 32.730 Atomic orbital electron populations 1.22428 0.77343 1.05446 1.04663 1.47532 1.08171 1.04423 1.72170 1.17071 0.85982 0.82657 0.76024 1.90823 1.15053 1.87190 1.51484 1.26748 1.03610 0.97448 1.15171 1.22359 1.03173 0.89743 0.99218 1.22535 0.85453 1.04145 1.00763 1.72073 1.27847 1.16289 1.23261 1.81772 1.01602 0.97072 1.55638 1.22052 0.97427 0.81767 0.95243 0.88885 1.23115 1.03665 0.93204 0.97804 1.22558 1.01301 0.95999 0.86983 1.63033 1.47707 1.05165 1.09900 1.22039 0.94173 0.88092 1.03576 1.20981 0.85484 0.87550 0.82261 1.90560 1.25042 1.86599 1.47050 1.42015 1.20563 1.05006 1.55919 1.18974 1.05564 0.82360 1.38608 0.92955 1.26164 1.03628 0.93850 0.98092 1.69818 1.40635 0.99296 1.48058 0.85338 0.76929 0.80053 0.79010 1.18013 1.20357 1.15118 1.23344 1.01648 0.85713 0.97840 0.88934 0.89859 0.86977 0.80171 0.77731 0.90278 0.88183 0.92963 0.93070 0.86141 0.89161 0.77443 0.91252 0.89621 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 7.54 127.77 0.96 1.28 16 2 N -0.59 -9.30 2.91 -819.10 -2.38 -11.68 16 3 C 0.59 12.13 7.65 86.57 0.66 12.79 16 4 O -0.57 -16.37 16.37 -4.12 -0.07 -16.44 16 5 C -0.30 -4.52 6.42 24.64 0.16 -4.36 16 6 C -0.11 -1.42 10.41 22.15 0.23 -1.19 16 7 C 0.06 0.69 11.15 84.87 0.95 1.63 16 8 N -0.57 -7.91 11.29 -85.46 -0.96 -8.88 16 9 S 0.48 4.96 18.80 -56.49 -1.06 3.89 16 10 C 0.14 2.78 3.43 46.38 0.16 2.94 16 11 H 0.09 2.44 7.03 -2.39 -0.02 2.42 16 12 C -0.14 -2.68 6.48 31.78 0.21 -2.47 16 13 C 0.06 1.69 5.65 86.65 0.49 2.18 16 14 N -0.53 -15.19 4.85 -890.08 -4.32 -19.51 16 15 C 0.05 1.47 5.03 85.56 0.43 1.90 16 16 C 0.45 19.75 7.43 87.66 0.65 20.40 16 17 O -0.61 -33.57 15.12 -3.09 -0.05 -33.61 16 18 N -0.59 -27.18 5.09 -306.99 -1.56 -28.74 16 19 C -0.33 -18.91 10.16 84.04 0.85 -18.06 16 20 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 21 C -0.02 -1.06 5.50 84.93 0.47 -0.59 16 22 N -0.94 -56.42 13.96 21.66 0.30 -56.12 16 23 Si 0.97 37.81 27.74 68.60 1.90 39.71 16 24 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 25 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.23 -7.33 6.52 99.48 0.65 -6.69 16 27 C 0.04 0.82 6.25 86.77 0.54 1.36 16 28 H 0.09 0.33 7.68 -2.39 -0.02 0.31 16 29 H 0.08 0.46 5.18 -15.74 -0.08 0.37 16 30 H 0.11 0.50 6.34 -2.39 -0.02 0.48 16 31 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.21 1.00 8.06 -2.92 -0.02 0.98 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.10 1.37 6.38 -2.39 -0.02 1.35 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.51 7.31 -2.39 -0.02 1.50 16 37 H 0.12 2.73 8.07 -2.38 -0.02 2.71 16 38 H 0.09 1.90 7.96 -2.39 -0.02 1.88 16 39 H 0.39 14.47 5.76 -92.71 -0.53 13.94 16 40 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 41 H 0.09 1.08 6.72 -2.39 -0.02 1.07 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -85.87 354.60 -1.03 -86.90 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.41 Total: 26.64 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.76 Total: 17.83 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -8.93 Total: -124.92 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.11 Total: -50.05 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.90 Total: 39.71 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.06 Total: 3.89 kcal Total: -85.87 -1.03 -86.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665637415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.641 kcal (2) G-P(sol) polarization free energy of solvation -85.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds