Wall clock time and date at job start Tue Mar 31 2020 20:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.76193 * 100.00049 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99640 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47361 * 89.99587 * 11 9 7 13 13 H 1.48497 * 109.47059 * 210.00081 * 11 9 7 14 14 H 1.48507 * 109.47001 * 329.99878 * 11 9 7 15 15 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.89172 * 179.29907 * 15 2 1 17 17 C 1.55158 * 111.00375 * 303.17927 * 15 2 1 18 18 C 1.54324 * 102.94501 * 153.57318 * 17 15 2 19 19 N 1.47020 * 107.26986 * 337.81011 * 18 17 15 20 20 C 1.34781 * 125.64521 * 178.97477 * 19 18 17 21 21 O 1.21602 * 119.99442 * 179.97438 * 20 19 18 22 22 C 1.47420 * 119.99960 * 359.97438 * 20 19 18 23 23 C 1.41284 * 126.41944 * 0.02562 * 22 20 19 24 24 N 1.30451 * 108.02634 * 179.97438 * 23 22 20 25 25 N 1.39929 * 108.89363 * 359.97438 * 24 23 22 26 26 H 0.97002 * 125.75090 * 179.97438 * 25 24 23 27 27 C 1.34257 * 108.49542 * 359.75340 * 25 24 23 28 28 C 1.47468 * 108.72396 * 358.96881 * 19 18 17 29 29 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 30 30 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 33 33 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 34 34 H 0.97010 * 119.99946 * 180.02562 * 10 9 7 35 35 H 1.09004 * 110.72197 * 271.93962 * 17 15 2 36 36 H 1.09005 * 110.71826 * 35.03156 * 17 15 2 37 37 H 1.09000 * 109.87903 * 97.22632 * 18 17 15 38 38 H 1.08992 * 109.88180 * 218.39069 * 18 17 15 39 39 H 1.08006 * 125.98898 * 0.02562 * 23 22 20 40 40 H 1.08005 * 126.29231 * 180.23838 * 27 25 24 41 41 H 1.08990 * 110.35220 * 265.25582 * 28 19 18 42 42 H 1.09002 * 110.40367 * 142.91361 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2264 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 0.4263 8.3317 1.4038 13 1 1.3618 9.1031 -0.6963 14 1 -0.5102 7.5616 -0.6963 15 6 2.1975 -1.2687 -0.0006 16 1 3.2737 -1.0961 -0.0129 17 6 1.7891 -2.1472 1.2114 18 6 2.0704 -3.5795 0.7105 19 7 2.0612 -3.5377 -0.7591 20 6 2.2867 -4.5856 -1.5761 21 8 2.2534 -4.4343 -2.7822 22 6 2.5737 -5.9152 -1.0076 23 6 2.6446 -6.2430 0.3649 24 7 2.9185 -7.5147 0.4625 25 7 3.0336 -8.0535 -0.8238 26 1 3.2331 -8.9790 -1.0348 27 6 2.8166 -7.0745 -1.7166 28 6 1.7642 -2.1595 -1.1916 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7583 2.5303 -0.8892 33 1 0.7589 2.5299 0.8908 34 1 3.5667 7.6331 0.0031 35 1 2.4041 -1.9149 2.0808 36 1 0.7318 -2.0174 1.4429 37 1 3.0460 -3.9115 1.0658 38 1 1.2939 -4.2561 1.0670 39 1 2.4970 -5.5605 1.1889 40 1 2.8323 -7.1749 -2.7918 41 1 0.6975 -2.0439 -1.3834 42 1 2.3401 -1.9083 -2.0823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687195236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:38 Heat of formation + Delta-G solvation = 26.914045 kcal Electronic energy + Delta-G solvation = -26033.916041 eV Core-core repulsion = 22142.811775 eV Total energy + Delta-G solvation = -3891.104266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.85158 -40.35565 -39.15372 -37.44495 -35.05522 -32.53608 -32.43569 -31.48842 -30.60284 -29.71682 -28.24673 -26.87514 -25.50411 -24.56866 -22.98599 -21.85334 -21.33166 -19.94652 -19.25698 -18.57533 -17.78347 -17.16687 -16.65104 -16.13158 -15.76503 -15.44710 -15.41588 -14.97415 -14.85592 -14.80388 -14.28903 -13.95174 -13.78657 -13.39372 -13.26480 -13.19304 -13.02839 -12.78632 -12.57817 -12.32165 -12.03710 -11.80651 -11.63735 -11.55388 -11.07042 -11.03914 -10.98618 -10.76576 -10.34980 -10.16115 -9.81855 -9.43873 -9.34478 -9.07274 -8.95218 -8.58257 -8.24020 -6.51272 -6.22284 -3.93072 1.08685 1.72626 2.19444 2.53736 2.95483 2.98518 3.13182 3.22008 3.25742 3.30075 3.56910 4.06245 4.19462 4.23248 4.32506 4.42558 4.60862 4.65715 4.79087 4.87662 4.89767 5.02226 5.08854 5.11251 5.12966 5.21021 5.36154 5.48908 5.54442 5.54976 5.70457 5.73386 5.79488 5.87553 5.93473 6.00203 6.11099 6.55555 6.57281 6.97687 7.22489 7.43291 7.58954 7.95545 8.34398 8.47591 9.23053 10.85091 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037557 B = 0.001911 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.352497 B =14649.679394 C =14685.602421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.614 5.614 3 C 0.536 3.464 4 O -0.513 6.513 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.132 3.868 16 H 0.119 0.881 17 C -0.147 4.147 18 C 0.096 3.904 19 N -0.612 5.612 20 C 0.611 3.389 21 O -0.546 6.546 22 C -0.290 4.290 23 C 0.072 3.928 24 N -0.296 5.296 25 N -0.463 5.463 26 H 0.445 0.555 27 C 0.136 3.864 28 C 0.100 3.900 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.268 0.732 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.201 0.799 40 H 0.193 0.807 41 H 0.074 0.926 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 -28.842 1.345 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.350 5.350 3 C 0.325 3.675 4 O -0.386 6.386 5 C -0.300 4.300 6 S 0.165 5.835 7 C -0.684 4.684 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.026 3.974 16 H 0.137 0.863 17 C -0.186 4.186 18 C -0.027 4.027 19 N -0.346 5.346 20 C 0.401 3.599 21 O -0.424 6.424 22 C -0.304 4.304 23 C -0.116 4.116 24 N -0.117 5.117 25 N -0.169 5.169 26 H 0.290 0.710 27 C -0.018 4.018 28 C -0.024 4.024 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.217 0.783 40 H 0.210 0.790 41 H 0.092 0.908 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.719 -29.630 1.463 29.898 hybrid contribution -2.339 1.093 -0.616 2.655 sum -6.058 -28.537 0.846 29.185 Atomic orbital electron populations 1.21813 0.79572 1.03345 1.02087 1.47686 1.06778 1.04811 1.75731 1.20400 0.87945 0.84458 0.74732 1.90702 1.13750 1.86651 1.47518 1.23560 1.04587 0.96994 1.04864 1.85418 1.07989 0.93340 1.96714 1.22854 0.94300 0.92184 1.59021 0.90910 1.24992 0.95672 0.98388 0.94529 1.70017 1.11742 1.21678 1.46788 0.86168 0.80274 0.80727 0.78334 1.20280 1.20756 1.19686 1.22075 0.99189 0.82881 0.93232 0.86340 1.23092 1.03455 0.92935 0.99075 1.22364 1.01821 0.98107 0.80432 1.48046 1.70987 1.08862 1.06754 1.16824 0.75912 0.82057 0.85091 1.90802 1.53058 1.84612 1.13967 1.20206 1.22081 0.94865 0.93295 1.24814 0.96654 0.93184 0.96953 1.77209 1.23920 1.10979 0.99580 1.46277 1.54749 1.11545 1.04282 0.71005 1.23069 0.94081 0.87431 0.97192 1.22532 1.01432 0.79922 0.98465 0.92467 0.91128 0.90257 0.89101 0.89105 0.92173 0.89001 0.89653 0.90430 0.90562 0.78294 0.79025 0.90798 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 8.99 59.84 0.54 1.23 16 2 N -0.61 -7.91 2.91 -171.48 -0.50 -8.41 16 3 C 0.54 9.69 7.69 -10.98 -0.08 9.61 16 4 O -0.51 -11.27 15.24 5.56 0.08 -11.19 16 5 C -0.15 -2.92 4.71 36.01 0.17 -2.75 16 6 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.74 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 11 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.13 1.47 3.45 -65.78 -0.23 1.24 16 16 H 0.12 1.61 7.01 -51.93 -0.36 1.25 16 17 C -0.15 -1.10 6.51 -24.90 -0.16 -1.26 16 18 C 0.10 0.63 4.98 -3.07 -0.02 0.61 16 19 N -0.61 -6.03 3.33 -171.76 -0.57 -6.60 16 20 C 0.61 7.01 7.85 -12.52 -0.10 6.91 16 21 O -0.55 -8.17 17.15 5.28 0.09 -8.08 16 22 C -0.29 -2.57 6.09 -105.07 -0.64 -3.21 16 23 C 0.07 0.54 10.45 -16.98 -0.18 0.37 16 24 N -0.30 -2.41 12.63 30.86 0.39 -2.02 16 25 N -0.46 -2.58 7.29 30.85 0.22 -2.35 16 26 H 0.45 0.89 8.96 -182.73 -1.64 -0.75 16 27 C 0.14 0.89 11.82 -16.56 -0.20 0.70 16 28 C 0.10 1.08 6.49 -2.50 -0.02 1.07 16 29 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.07 0.47 6.21 -51.93 -0.32 0.15 16 31 H 0.08 0.74 6.44 -51.93 -0.33 0.41 16 32 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 33 H 0.09 1.62 7.40 -51.91 -0.38 1.23 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.54 6.20 -51.93 -0.32 0.22 16 37 H 0.08 0.43 6.84 -51.93 -0.35 0.07 16 38 H 0.08 0.36 6.99 -51.93 -0.36 -0.01 16 39 H 0.20 1.01 4.48 -52.48 -0.23 0.78 16 40 H 0.19 0.82 8.06 -52.48 -0.42 0.39 16 41 H 0.07 0.74 7.10 -51.93 -0.37 0.37 16 42 H 0.09 1.11 8.04 -51.93 -0.42 0.70 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -38.51 361.41 -8.38 -46.89 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.33 Total: -2.55 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.71 Total: 1.75 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.28 Total: -44.60 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.18 Total: -19.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.51 -8.38 -46.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687195236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.806 kcal (2) G-P(sol) polarization free energy of solvation -38.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds