Wall clock time and date at job start Tue Mar 31 2020 20:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.76193 * 100.00049 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99640 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47361 * 89.99587 * 11 9 7 13 13 H 1.48497 * 109.47059 * 210.00081 * 11 9 7 14 14 H 1.48507 * 109.47001 * 329.99878 * 11 9 7 15 15 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.89172 * 179.29907 * 15 2 1 17 17 C 1.55158 * 111.00375 * 303.17927 * 15 2 1 18 18 C 1.54324 * 102.94501 * 153.57318 * 17 15 2 19 19 N 1.47020 * 107.26986 * 337.81011 * 18 17 15 20 20 C 1.34781 * 125.64521 * 178.97477 * 19 18 17 21 21 O 1.21602 * 119.99442 * 179.97438 * 20 19 18 22 22 C 1.47420 * 119.99960 * 359.97438 * 20 19 18 23 23 C 1.41284 * 126.41944 * 0.02562 * 22 20 19 24 24 N 1.30451 * 108.02634 * 179.97438 * 23 22 20 25 25 N 1.39929 * 108.89363 * 359.97438 * 24 23 22 26 26 H 0.97002 * 125.75090 * 179.97438 * 25 24 23 27 27 C 1.34257 * 108.49542 * 359.75340 * 25 24 23 28 28 C 1.47468 * 108.72396 * 358.96881 * 19 18 17 29 29 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 30 30 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 33 33 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 34 34 H 0.97010 * 119.99946 * 180.02562 * 10 9 7 35 35 H 1.09004 * 110.72197 * 271.93962 * 17 15 2 36 36 H 1.09005 * 110.71826 * 35.03156 * 17 15 2 37 37 H 1.09000 * 109.87903 * 97.22632 * 18 17 15 38 38 H 1.08992 * 109.88180 * 218.39069 * 18 17 15 39 39 H 1.08006 * 125.98898 * 0.02562 * 23 22 20 40 40 H 1.08005 * 126.29231 * 180.23838 * 27 25 24 41 41 H 1.08990 * 110.35220 * 265.25582 * 28 19 18 42 42 H 1.09002 * 110.40367 * 142.91361 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2264 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 0.4263 8.3317 1.4038 13 1 1.3618 9.1031 -0.6963 14 1 -0.5102 7.5616 -0.6963 15 6 2.1975 -1.2687 -0.0006 16 1 3.2737 -1.0961 -0.0129 17 6 1.7891 -2.1472 1.2114 18 6 2.0704 -3.5795 0.7105 19 7 2.0612 -3.5377 -0.7591 20 6 2.2867 -4.5856 -1.5761 21 8 2.2534 -4.4343 -2.7822 22 6 2.5737 -5.9152 -1.0076 23 6 2.6446 -6.2430 0.3649 24 7 2.9185 -7.5147 0.4625 25 7 3.0336 -8.0535 -0.8238 26 1 3.2331 -8.9790 -1.0348 27 6 2.8166 -7.0745 -1.7166 28 6 1.7642 -2.1595 -1.1916 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7583 2.5303 -0.8892 33 1 0.7589 2.5299 0.8908 34 1 3.5667 7.6331 0.0031 35 1 2.4041 -1.9149 2.0808 36 1 0.7318 -2.0174 1.4429 37 1 3.0460 -3.9115 1.0658 38 1 1.2939 -4.2561 1.0670 39 1 2.4970 -5.5605 1.1889 40 1 2.8323 -7.1749 -2.7918 41 1 0.6975 -2.0439 -1.3834 42 1 2.3401 -1.9083 -2.0823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687195236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:37 Heat of formation + Delta-G solvation = -2.176253 kcal Electronic energy + Delta-G solvation = -26035.177491 eV Core-core repulsion = 22142.811775 eV Total energy + Delta-G solvation = -3892.365716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.42852 -41.33210 -40.23789 -38.44877 -36.16945 -34.56855 -33.21164 -32.29883 -31.26095 -30.77745 -29.30767 -27.80580 -27.62594 -25.35856 -23.59024 -22.56109 -22.21420 -20.61201 -20.41982 -19.59777 -19.23388 -18.42667 -17.44153 -17.13207 -16.86455 -16.79248 -16.61083 -16.30122 -15.91504 -15.53856 -15.40953 -14.98898 -14.69504 -14.48438 -14.41364 -14.26186 -13.90494 -13.87791 -13.62826 -13.47857 -13.16846 -13.10018 -12.87876 -12.63728 -12.53515 -12.39018 -12.21749 -11.73839 -11.68087 -11.12622 -11.03154 -10.90265 -10.86691 -10.24321 -10.03222 -9.79628 -9.53445 -8.65445 -8.33042 -6.11059 0.50816 1.12656 1.24360 1.43825 1.44170 1.53986 1.56777 1.71395 1.91868 2.24577 2.29615 2.38705 3.01245 3.26515 3.36858 3.49757 3.72658 3.78362 3.89481 4.00789 4.01927 4.13974 4.19405 4.26083 4.36122 4.38115 4.50706 4.53503 4.65121 4.67607 4.72353 4.83694 4.91294 5.06647 5.12715 5.17026 5.34745 5.43609 5.56972 6.19951 6.21075 6.24079 6.42598 6.51158 7.08325 7.12019 7.13651 8.76098 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037557 B = 0.001911 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.352497 B =14649.679394 C =14685.602421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.598 5.598 3 C 0.534 3.466 4 O -0.564 6.564 5 C -0.122 4.122 6 S -0.155 6.155 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 0.998 3.002 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.257 1.257 15 C 0.127 3.873 16 H 0.087 0.913 17 C -0.133 4.133 18 C 0.094 3.906 19 N -0.612 5.612 20 C 0.606 3.394 21 O -0.594 6.594 22 C -0.317 4.317 23 C 0.078 3.922 24 N -0.320 5.320 25 N -0.449 5.449 26 H 0.460 0.540 27 C 0.148 3.852 28 C 0.106 3.894 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.270 0.730 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.221 0.779 40 H 0.213 0.787 41 H 0.089 0.911 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 -30.605 2.514 31.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.332 5.332 3 C 0.322 3.678 4 O -0.442 6.442 5 C -0.273 4.273 6 S 0.072 5.928 7 C -0.692 4.692 8 H 0.102 0.898 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.181 1.181 15 C 0.022 3.978 16 H 0.105 0.895 17 C -0.172 4.172 18 C -0.028 4.028 19 N -0.345 5.345 20 C 0.398 3.602 21 O -0.476 6.476 22 C -0.332 4.332 23 C -0.109 4.109 24 N -0.141 5.141 25 N -0.155 5.155 26 H 0.308 0.692 27 C -0.007 4.007 28 C -0.018 4.018 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.237 0.763 40 H 0.229 0.771 41 H 0.107 0.893 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.631 -31.471 2.675 32.273 hybrid contribution -1.461 1.456 -1.010 2.297 sum -8.092 -30.016 1.665 31.132 Atomic orbital electron populations 1.22172 0.76741 1.05374 1.03475 1.47607 1.08393 1.03759 1.73412 1.20175 0.87246 0.85437 0.74915 1.90687 1.15787 1.87384 1.50387 1.23375 1.02670 0.94647 1.06637 1.85618 1.12737 0.97415 1.97037 1.23198 0.94668 0.92580 1.58749 0.89763 1.26132 0.97568 1.01728 0.93796 1.70189 1.14133 1.22423 1.48067 0.84954 0.77909 0.76314 0.78812 1.19219 1.20501 1.18131 1.22106 0.97509 0.82498 0.95735 0.89497 1.23082 1.04844 0.92042 0.97201 1.22619 1.03771 0.98165 0.78227 1.48092 1.70278 1.07927 1.08200 1.17223 0.75212 0.83081 0.84644 1.90769 1.55424 1.85444 1.15941 1.20150 1.24531 0.94212 0.94335 1.25106 0.95705 0.93241 0.96886 1.77176 1.24794 1.11337 1.00799 1.46298 1.53578 1.12206 1.03457 0.69162 1.23404 0.92213 0.86979 0.98127 1.22362 1.01621 0.80772 0.97065 0.91398 0.87531 0.89898 0.87495 0.86830 0.92054 0.88388 0.87406 0.89192 0.87434 0.76268 0.77085 0.89336 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 8.99 127.77 1.15 2.12 16 2 N -0.60 -14.64 2.91 -814.84 -2.37 -17.01 16 3 C 0.53 19.44 7.69 87.66 0.67 20.11 16 4 O -0.56 -26.00 15.24 -3.03 -0.05 -26.05 16 5 C -0.12 -4.74 4.71 71.24 0.34 -4.40 16 6 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 7 C -0.54 -30.77 9.50 67.96 0.65 -30.12 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 C 0.01 0.70 5.49 84.86 0.47 1.17 16 10 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 11 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 13 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 15 C 0.13 2.73 3.45 46.39 0.16 2.89 16 16 H 0.09 2.48 7.01 -2.38 -0.02 2.46 16 17 C -0.13 -1.59 6.51 31.78 0.21 -1.39 16 18 C 0.09 0.96 4.98 86.73 0.43 1.39 16 19 N -0.61 -11.29 3.33 -815.57 -2.71 -14.01 16 20 C 0.61 13.58 7.85 86.66 0.68 14.26 16 21 O -0.59 -18.12 17.15 -4.04 -0.07 -18.19 16 22 C -0.32 -5.16 6.09 -20.16 -0.12 -5.28 16 23 C 0.08 1.00 10.45 85.65 0.89 1.89 16 24 N -0.32 -4.50 12.63 -56.27 -0.71 -5.21 16 25 N -0.45 -4.04 7.29 -56.31 -0.41 -4.45 16 26 H 0.46 0.82 8.96 -213.43 -1.91 -1.09 16 27 C 0.15 1.69 11.82 84.28 1.00 2.69 16 28 C 0.11 2.25 6.49 86.85 0.56 2.81 16 29 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 30 H 0.11 0.91 6.21 -2.38 -0.01 0.90 16 31 H 0.08 1.26 6.44 -2.39 -0.02 1.25 16 32 H 0.11 3.78 8.11 -2.39 -0.02 3.76 16 33 H 0.11 3.86 7.40 -2.40 -0.02 3.85 16 34 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 35 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.11 0.84 6.20 -2.38 -0.01 0.83 16 37 H 0.09 0.74 6.84 -2.39 -0.02 0.72 16 38 H 0.11 0.52 6.99 -2.39 -0.02 0.50 16 39 H 0.22 1.51 4.48 -2.91 -0.01 1.49 16 40 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.09 1.61 7.10 -2.39 -0.02 1.59 16 42 H 0.05 1.50 8.04 -2.39 -0.02 1.48 16 Total: -1.00 -88.99 361.41 1.08 -87.91 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.83 Total: 8.97 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 7.08 Total: 8.15 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -5.92 Total: -96.35 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.12 Total: -44.24 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -88.99 1.08 -87.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687195236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.733 kcal (2) G-P(sol) polarization free energy of solvation -88.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds