Wall clock time and date at job start Tue Mar 31 2020 20:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34767 * 120.00330 * 2 1 4 4 O 1.21602 * 120.00544 * 186.52628 * 3 2 1 5 5 C 1.47440 * 119.99773 * 6.52729 * 3 2 1 6 6 C 1.41283 * 126.41284 * 7.84624 * 5 3 2 7 7 N 1.30450 * 108.02253 * 179.87883 * 6 5 3 8 8 N 1.39931 * 108.89527 * 0.37691 * 7 6 5 9 9 H 0.97006 * 125.75586 * 179.77179 * 8 7 6 10 10 C 1.34262 * 108.49442 * 359.75920 * 8 7 6 11 11 C 1.46503 * 119.99851 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.64268 * 176.86033 * 11 2 1 13 13 C 1.55161 * 110.72158 * 300.00070 * 11 2 1 14 14 C 1.54903 * 101.58330 * 154.04349 * 13 11 2 15 15 N 1.47426 * 104.83385 * 322.98920 * 14 13 11 16 16 C 1.34771 * 125.64946 * 204.09211 * 15 14 13 17 17 O 1.21284 * 119.99817 * 179.74627 * 16 15 14 18 18 C 1.50697 * 120.00045 * 0.02623 * 16 15 14 19 19 S 1.81005 * 109.46980 * 179.72494 * 18 16 15 20 20 C 1.76209 * 99.99918 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99818 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00010 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99865 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47059 * 90.00071 * 24 22 20 26 26 H 1.48500 * 109.47361 * 209.99904 * 24 22 20 27 27 H 1.48500 * 109.47519 * 330.00333 * 24 22 20 28 28 C 1.47029 * 108.69897 * 24.35605 * 15 14 13 29 29 H 1.08999 * 109.47158 * 275.91254 * 1 2 3 30 30 H 1.09001 * 109.47255 * 35.91185 * 1 2 3 31 31 H 1.09001 * 109.47416 * 155.91772 * 1 2 3 32 32 H 1.08000 * 125.98955 * 359.97438 * 6 5 3 33 33 H 1.07999 * 126.29392 * 180.02562 * 10 8 7 34 34 H 1.09002 * 111.00523 * 35.96803 * 13 11 2 35 35 H 1.09001 * 111.00301 * 272.11757 * 13 11 2 36 36 H 1.09000 * 110.36949 * 204.15021 * 14 13 11 37 37 H 1.09005 * 110.46323 * 81.87468 * 14 13 11 38 38 H 1.08998 * 109.47003 * 299.72224 * 18 16 15 39 39 H 1.08998 * 109.47615 * 59.72661 * 18 16 15 40 40 H 0.96998 * 119.99560 * 180.02562 * 23 22 20 41 41 H 1.09001 * 109.87776 * 118.13575 * 28 15 14 42 42 H 1.08997 * 109.87910 * 239.28990 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3490 1.1705 -0.1197 5 6 1.4089 2.4398 0.1452 6 6 0.0367 2.5900 0.4459 7 7 -0.2293 3.8663 0.4914 8 7 0.9409 4.5830 0.2173 9 1 1.0192 5.5493 0.1849 10 6 1.9370 3.7077 0.0068 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0923 -0.0564 13 6 1.8435 -2.1076 1.2559 14 6 2.1216 -3.5475 0.7570 15 7 1.6845 -3.5501 -0.6510 16 6 1.3055 -4.6358 -1.3538 17 8 0.9592 -4.5190 -2.5103 18 6 1.3058 -5.9939 -0.7009 19 16 0.7438 -7.2359 -1.8916 20 6 0.8404 -8.6838 -0.8920 21 1 1.1744 -8.6114 0.1325 22 6 0.4874 -9.9174 -1.4213 23 7 0.0798 -10.0056 -2.6698 24 14 0.5905 -11.4524 -0.3618 25 1 -0.7037 -11.6599 0.3362 26 1 0.8838 -12.6278 -1.2206 27 1 1.6734 -11.2897 0.6413 28 6 1.7367 -2.1729 -1.1633 29 1 -0.3633 0.1059 1.0222 30 1 -0.3634 0.8323 -0.6028 31 1 -0.3634 -0.9382 -0.4193 32 1 -0.6683 1.7886 0.6110 33 1 2.9629 3.9509 -0.2272 34 1 0.7949 -1.9833 1.5259 35 1 2.4938 -1.8516 2.0924 36 1 1.5427 -4.2677 1.3351 37 1 3.1854 -3.7754 0.8244 38 1 2.3155 -6.2380 -0.3706 39 1 0.6349 -5.9844 0.1581 40 1 -0.1673 -10.8676 -3.0396 41 1 2.4471 -2.1109 -1.9878 42 1 0.7469 -1.8650 -1.5002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687195923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:54 Heat of formation + Delta-G solvation = 34.094763 kcal Electronic energy + Delta-G solvation = -26043.785756 eV Core-core repulsion = 22152.992868 eV Total energy + Delta-G solvation = -3890.792887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93417 -40.36762 -39.14854 -37.30356 -35.37608 -32.52862 -32.42802 -31.38404 -30.47478 -29.72045 -28.26222 -27.36177 -25.49509 -24.10444 -23.08346 -22.36930 -20.90187 -19.82867 -19.38220 -18.69291 -17.73721 -17.16324 -16.66126 -16.11998 -15.99018 -15.62078 -15.18869 -15.03417 -14.80536 -14.78438 -14.16994 -13.97141 -13.89612 -13.71236 -13.40325 -13.26052 -12.80547 -12.54450 -12.42441 -12.21649 -12.00136 -11.85444 -11.73907 -11.63528 -11.06895 -11.02253 -11.01516 -10.76064 -10.36149 -10.16432 -9.81860 -9.44988 -9.36256 -9.06646 -8.97070 -8.54050 -8.23549 -6.50488 -6.21657 -3.92432 1.04822 1.68593 2.17779 2.49842 2.98094 3.03247 3.05728 3.22398 3.26740 3.30788 3.61600 4.07822 4.19700 4.27505 4.29528 4.34172 4.52524 4.66568 4.81542 4.85551 4.95162 4.97859 5.06020 5.09767 5.13229 5.13570 5.31557 5.46581 5.55094 5.60295 5.64575 5.77373 5.81048 5.82212 5.91930 6.12884 6.18404 6.39081 6.54505 6.94193 7.04147 7.59330 7.62740 7.87964 8.35193 8.53615 9.23606 10.85764 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.001918 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.788407 B =14593.159082 C =14698.538884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.601 5.601 3 C 0.599 3.401 4 O -0.546 6.546 5 C -0.293 4.293 6 C 0.068 3.932 7 N -0.296 5.296 8 N -0.464 5.464 9 H 0.445 0.555 10 C 0.136 3.864 11 C 0.132 3.868 12 H 0.119 0.881 13 C -0.142 4.142 14 C 0.102 3.898 15 N -0.625 5.625 16 C 0.549 3.451 17 O -0.514 6.514 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.099 3.901 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.207 0.793 33 H 0.192 0.808 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.073 0.927 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 28.394 10.514 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.333 5.333 3 C 0.389 3.611 4 O -0.425 6.425 5 C -0.308 4.308 6 C -0.120 4.120 7 N -0.117 5.117 8 N -0.169 5.169 9 H 0.290 0.710 10 C -0.017 4.017 11 C 0.028 3.972 12 H 0.137 0.863 13 C -0.181 4.181 14 C -0.022 4.022 15 N -0.364 5.364 16 C 0.338 3.662 17 O -0.388 6.388 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.025 4.025 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.223 0.777 33 H 0.209 0.791 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.508 29.239 8.714 30.547 hybrid contribution 1.057 -1.245 1.897 2.503 sum 2.566 27.993 10.611 30.047 Atomic orbital electron populations 1.22394 0.79734 1.04437 1.01896 1.47411 1.06832 1.05100 1.73974 1.17235 0.86205 0.82334 0.75327 1.90781 1.13796 1.87114 1.50760 1.20235 0.94877 0.93558 1.22126 1.25085 0.95427 0.94668 0.96813 1.77233 1.05593 1.05540 1.23350 1.46300 1.06501 1.09764 1.54292 0.71025 1.23077 0.95187 0.89015 0.94452 1.22088 0.98491 0.82158 0.94473 0.86335 1.23174 1.03199 0.94086 0.97630 1.22289 1.00550 0.97111 0.82227 1.48437 1.68562 1.06560 1.12803 1.20050 0.75852 0.84377 0.85961 1.90718 1.46042 1.85369 1.16657 1.23505 1.05282 0.95759 1.05140 1.85418 1.85851 0.97085 1.15055 1.22857 1.52063 0.93180 1.00215 0.90905 1.24995 0.94542 0.98698 0.95364 1.70021 1.41506 1.25653 1.13072 0.86165 0.78571 0.81056 0.79688 1.20279 1.20753 1.19683 1.22133 1.02325 0.81675 0.96356 0.91710 0.89856 0.89840 0.77680 0.79080 0.89944 0.89319 0.89805 0.90916 0.89200 0.89244 0.92180 0.90857 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 7.41 59.85 0.44 0.78 16 2 N -0.60 -5.17 2.89 -173.09 -0.50 -5.67 16 3 C 0.60 6.06 7.65 -12.52 -0.10 5.96 16 4 O -0.55 -7.24 16.30 5.28 0.09 -7.16 16 5 C -0.29 -2.34 5.92 -105.06 -0.62 -2.97 16 6 C 0.07 0.47 9.87 -16.98 -0.17 0.30 16 7 N -0.30 -2.28 12.63 30.86 0.39 -1.89 16 8 N -0.46 -2.37 7.29 30.85 0.22 -2.14 16 9 H 0.44 0.73 8.96 -182.72 -1.64 -0.90 16 10 C 0.14 0.81 11.83 -16.56 -0.20 0.61 16 11 C 0.13 1.26 3.34 -66.09 -0.22 1.04 16 12 H 0.12 1.27 7.00 -51.93 -0.36 0.90 16 13 C -0.14 -1.12 6.66 -24.58 -0.16 -1.28 16 14 C 0.10 1.03 6.69 -2.53 -0.02 1.01 16 15 N -0.63 -8.77 3.33 -170.51 -0.57 -9.34 16 16 C 0.55 10.46 7.87 -10.99 -0.09 10.38 16 17 O -0.51 -11.88 16.19 5.55 0.09 -11.79 16 18 C -0.15 -2.96 5.17 36.00 0.19 -2.77 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 24 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.10 1.20 6.41 -3.06 -0.02 1.18 16 29 H 0.06 0.26 7.27 -51.93 -0.38 -0.12 16 30 H 0.08 0.42 5.43 -51.93 -0.28 0.13 16 31 H 0.08 0.55 6.21 -51.93 -0.32 0.23 16 32 H 0.21 0.91 4.51 -52.49 -0.24 0.67 16 33 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.08 0.60 7.34 -51.93 -0.38 0.21 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.81 7.47 -51.93 -0.39 0.42 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 39 H 0.09 1.65 7.84 -51.92 -0.41 1.24 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.89 6.06 -51.93 -0.31 0.57 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -38.71 361.93 -8.45 -47.17 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.37 Total: -3.07 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.76 Total: 1.38 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.28 Total: -44.39 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.18 Total: -18.95 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.71 -8.45 -47.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687195923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.263 kcal (2) G-P(sol) polarization free energy of solvation -38.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds