Wall clock time and date at job start Tue Mar 31 2020 20:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34767 * 120.00330 * 2 1 4 4 O 1.21602 * 120.00544 * 186.52628 * 3 2 1 5 5 C 1.47440 * 119.99773 * 6.52729 * 3 2 1 6 6 C 1.41283 * 126.41284 * 7.84624 * 5 3 2 7 7 N 1.30450 * 108.02253 * 179.87883 * 6 5 3 8 8 N 1.39931 * 108.89527 * 0.37691 * 7 6 5 9 9 H 0.97006 * 125.75586 * 179.77179 * 8 7 6 10 10 C 1.34262 * 108.49442 * 359.75920 * 8 7 6 11 11 C 1.46503 * 119.99851 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.64268 * 176.86033 * 11 2 1 13 13 C 1.55161 * 110.72158 * 300.00070 * 11 2 1 14 14 C 1.54903 * 101.58330 * 154.04349 * 13 11 2 15 15 N 1.47426 * 104.83385 * 322.98920 * 14 13 11 16 16 C 1.34771 * 125.64946 * 204.09211 * 15 14 13 17 17 O 1.21284 * 119.99817 * 179.74627 * 16 15 14 18 18 C 1.50697 * 120.00045 * 0.02623 * 16 15 14 19 19 S 1.81005 * 109.46980 * 179.72494 * 18 16 15 20 20 C 1.76209 * 99.99918 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99818 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00010 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99865 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47059 * 90.00071 * 24 22 20 26 26 H 1.48500 * 109.47361 * 209.99904 * 24 22 20 27 27 H 1.48500 * 109.47519 * 330.00333 * 24 22 20 28 28 C 1.47029 * 108.69897 * 24.35605 * 15 14 13 29 29 H 1.08999 * 109.47158 * 275.91254 * 1 2 3 30 30 H 1.09001 * 109.47255 * 35.91185 * 1 2 3 31 31 H 1.09001 * 109.47416 * 155.91772 * 1 2 3 32 32 H 1.08000 * 125.98955 * 359.97438 * 6 5 3 33 33 H 1.07999 * 126.29392 * 180.02562 * 10 8 7 34 34 H 1.09002 * 111.00523 * 35.96803 * 13 11 2 35 35 H 1.09001 * 111.00301 * 272.11757 * 13 11 2 36 36 H 1.09000 * 110.36949 * 204.15021 * 14 13 11 37 37 H 1.09005 * 110.46323 * 81.87468 * 14 13 11 38 38 H 1.08998 * 109.47003 * 299.72224 * 18 16 15 39 39 H 1.08998 * 109.47615 * 59.72661 * 18 16 15 40 40 H 0.96998 * 119.99560 * 180.02562 * 23 22 20 41 41 H 1.09001 * 109.87776 * 118.13575 * 28 15 14 42 42 H 1.08997 * 109.87910 * 239.28990 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3490 1.1705 -0.1197 5 6 1.4089 2.4398 0.1452 6 6 0.0367 2.5900 0.4459 7 7 -0.2293 3.8663 0.4914 8 7 0.9409 4.5830 0.2173 9 1 1.0192 5.5493 0.1849 10 6 1.9370 3.7077 0.0068 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0923 -0.0564 13 6 1.8435 -2.1076 1.2559 14 6 2.1216 -3.5475 0.7570 15 7 1.6845 -3.5501 -0.6510 16 6 1.3055 -4.6358 -1.3538 17 8 0.9592 -4.5190 -2.5103 18 6 1.3058 -5.9939 -0.7009 19 16 0.7438 -7.2359 -1.8916 20 6 0.8404 -8.6838 -0.8920 21 1 1.1744 -8.6114 0.1325 22 6 0.4874 -9.9174 -1.4213 23 7 0.0798 -10.0056 -2.6698 24 14 0.5905 -11.4524 -0.3618 25 1 -0.7037 -11.6599 0.3362 26 1 0.8838 -12.6278 -1.2206 27 1 1.6734 -11.2897 0.6413 28 6 1.7367 -2.1729 -1.1633 29 1 -0.3633 0.1059 1.0222 30 1 -0.3634 0.8323 -0.6028 31 1 -0.3634 -0.9382 -0.4193 32 1 -0.6683 1.7886 0.6110 33 1 2.9629 3.9509 -0.2272 34 1 0.7949 -1.9833 1.5259 35 1 2.4938 -1.8516 2.0924 36 1 1.5427 -4.2677 1.3351 37 1 3.1854 -3.7754 0.8244 38 1 2.3155 -6.2380 -0.3706 39 1 0.6349 -5.9844 0.1581 40 1 -0.1673 -10.8676 -3.0396 41 1 2.4471 -2.1109 -1.9878 42 1 0.7469 -1.8650 -1.5002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687195923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:53 Heat of formation + Delta-G solvation = 5.209795 kcal Electronic energy + Delta-G solvation = -26045.038302 eV Core-core repulsion = 22152.992868 eV Total energy + Delta-G solvation = -3892.045433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45819 -41.32229 -40.21018 -38.43788 -36.23399 -34.57260 -33.22806 -32.23879 -31.19745 -30.86887 -29.25118 -28.08056 -27.62350 -24.99684 -23.88565 -22.88730 -21.61486 -20.76021 -20.42572 -19.59217 -19.27326 -18.18815 -17.81924 -16.92691 -16.89141 -16.85923 -16.46024 -16.41019 -15.75293 -15.69227 -15.38155 -15.23916 -14.75617 -14.61785 -14.39945 -14.07662 -13.93900 -13.82183 -13.62543 -13.22764 -13.13543 -12.88683 -12.85277 -12.66000 -12.60528 -12.53061 -12.17971 -11.80617 -11.68705 -11.12875 -11.01337 -10.92888 -10.81942 -10.26507 -9.95905 -9.74669 -9.62586 -8.66576 -8.33364 -6.11878 0.53144 1.14456 1.22481 1.43954 1.44099 1.54722 1.56657 1.73657 1.92087 2.22040 2.28730 2.37630 3.00905 3.22929 3.41115 3.51445 3.65015 3.89177 3.90414 3.94475 4.07211 4.11831 4.24440 4.25513 4.32060 4.40071 4.46686 4.57037 4.60607 4.63218 4.75679 4.80943 4.93225 4.97845 5.12508 5.26186 5.32317 5.43348 5.52641 6.21219 6.21903 6.33046 6.34899 6.51596 7.07829 7.09286 7.15944 8.75871 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.034526 B = 0.001918 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.788407 B =14593.159082 C =14698.538884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.599 5.599 3 C 0.597 3.403 4 O -0.587 6.587 5 C -0.319 4.319 6 C 0.073 3.927 7 N -0.324 5.324 8 N -0.451 5.451 9 H 0.459 0.541 10 C 0.147 3.853 11 C 0.141 3.859 12 H 0.107 0.893 13 C -0.126 4.126 14 C 0.092 3.908 15 N -0.614 5.614 16 C 0.548 3.452 17 O -0.567 6.567 18 C -0.119 4.119 19 S -0.153 6.153 20 C -0.544 4.544 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.257 1.257 28 C 0.098 3.902 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.226 0.774 33 H 0.213 0.787 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.271 0.729 41 H 0.055 0.945 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 29.359 13.578 32.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.330 5.330 3 C 0.389 3.611 4 O -0.468 6.468 5 C -0.334 4.334 6 C -0.114 4.114 7 N -0.145 5.145 8 N -0.157 5.157 9 H 0.307 0.693 10 C -0.008 4.008 11 C 0.036 3.964 12 H 0.125 0.875 13 C -0.164 4.164 14 C -0.030 4.030 15 N -0.349 5.349 16 C 0.336 3.664 17 O -0.445 6.445 18 C -0.270 4.270 19 S 0.075 5.925 20 C -0.692 4.692 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.181 1.181 28 C -0.026 4.026 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.242 0.758 33 H 0.229 0.771 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.582 30.270 11.835 32.540 hybrid contribution 1.069 -1.353 0.954 1.971 sum 2.651 28.918 12.790 31.731 Atomic orbital electron populations 1.22606 0.77972 1.04508 1.03789 1.47451 1.07873 1.04344 1.73317 1.17534 0.85836 0.83154 0.74604 1.90755 1.15469 1.87680 1.52899 1.20218 0.95549 0.93293 1.24373 1.25380 0.95236 0.94932 0.95850 1.77197 1.06830 1.06031 1.24432 1.46323 1.05700 1.10514 1.53182 0.69289 1.23430 0.96017 0.88601 0.92734 1.21892 0.97975 0.82394 0.94145 0.87460 1.23145 1.04595 0.91639 0.97059 1.22667 1.01519 0.99124 0.79706 1.48319 1.66302 1.06025 1.14287 1.19811 0.76060 0.85092 0.85438 1.90696 1.48893 1.86112 1.18837 1.23299 1.06236 0.94110 1.03336 1.85624 1.86901 1.00398 1.19625 1.23196 1.52010 0.93452 1.00556 0.89745 1.26140 0.93792 1.02533 0.96743 1.70191 1.42703 1.26641 1.15273 0.84943 0.79224 0.75978 0.77774 1.19220 1.20444 1.18114 1.22228 1.02033 0.81124 0.97201 0.88992 0.88935 0.90470 0.75800 0.77063 0.88557 0.87117 0.88614 0.89591 0.87483 0.86999 0.92022 0.92630 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 7.41 127.77 0.95 1.45 16 2 N -0.60 -9.37 2.89 -819.80 -2.37 -11.74 16 3 C 0.60 11.43 7.65 86.67 0.66 12.10 16 4 O -0.59 -15.34 16.30 -4.04 -0.07 -15.41 16 5 C -0.32 -4.61 5.92 -20.15 -0.12 -4.73 16 6 C 0.07 0.86 9.87 85.65 0.85 1.71 16 7 N -0.32 -4.38 12.63 -56.28 -0.71 -5.09 16 8 N -0.45 -3.74 7.29 -56.32 -0.41 -4.15 16 9 H 0.46 0.61 8.96 -213.42 -1.91 -1.30 16 10 C 0.15 1.49 11.83 84.28 1.00 2.48 16 11 C 0.14 2.48 3.34 46.18 0.15 2.64 16 12 H 0.11 2.21 7.00 -2.39 -0.02 2.19 16 13 C -0.13 -1.59 6.66 31.99 0.21 -1.37 16 14 C 0.09 1.60 6.69 86.85 0.58 2.18 16 15 N -0.61 -16.60 3.33 -811.78 -2.70 -19.30 16 16 C 0.55 20.92 7.87 87.66 0.69 21.61 16 17 O -0.57 -27.18 16.19 -3.04 -0.05 -27.23 16 18 C -0.12 -4.73 5.17 71.23 0.37 -4.36 16 19 S -0.15 -8.50 20.57 -56.49 -1.16 -9.67 16 20 C -0.54 -30.88 9.50 67.95 0.65 -30.24 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 24 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 28 C 0.10 2.34 6.41 86.73 0.56 2.90 16 29 H 0.09 0.42 7.27 -2.39 -0.02 0.40 16 30 H 0.09 0.74 5.43 -2.39 -0.01 0.73 16 31 H 0.08 0.88 6.21 -2.39 -0.01 0.86 16 32 H 0.23 1.40 4.51 -2.91 -0.01 1.38 16 33 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.10 1.01 7.34 -2.39 -0.02 0.99 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.51 7.47 -2.39 -0.02 1.49 16 37 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 39 H 0.11 3.93 7.84 -2.40 -0.02 3.91 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.77 6.06 -2.39 -0.01 1.76 16 Total: -1.00 -87.37 361.93 1.02 -86.35 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -0.83 Total: 9.08 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 7.01 Total: 7.55 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -5.90 Total: -95.98 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.12 Total: -42.64 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -87.37 1.02 -86.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687195923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.556 kcal (2) G-P(sol) polarization free energy of solvation -87.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds