Wall clock time and date at job start Tue Mar 31 2020 20:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 120.00094 * 2 1 4 4 C 1.52996 * 109.47114 * 269.72694 * 3 2 1 5 5 C 1.52998 * 109.47085 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47362 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00263 * 180.02562 * 6 5 4 8 8 O 1.21271 * 119.99829 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99875 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.46943 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00124 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99606 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99999 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00229 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99749 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47358 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47357 * 120.00079 * 15 13 11 18 18 H 1.48506 * 109.46802 * 239.99886 * 15 13 11 19 19 C 1.34776 * 119.99721 * 179.72582 * 2 1 3 20 20 O 1.21483 * 119.99678 * 177.24416 * 19 2 1 21 21 C 1.48452 * 120.00184 * 357.23839 * 19 2 1 22 22 C 1.39536 * 120.54817 * 186.71564 * 21 19 2 23 23 C 1.38763 * 118.26120 * 179.97438 * 22 21 19 24 24 N 1.32206 * 119.14862 * 359.97438 * 23 22 21 25 25 C 1.31879 * 121.03416 * 0.02562 * 24 23 22 26 26 N 1.31582 * 121.91733 * 359.72992 * 25 24 23 27 27 H 1.08996 * 109.46799 * 96.02951 * 1 2 3 28 28 H 1.09000 * 109.46889 * 216.03221 * 1 2 3 29 29 H 1.09001 * 109.46467 * 336.03105 * 1 2 3 30 30 H 1.09003 * 109.46855 * 29.72587 * 3 2 1 31 31 H 1.09001 * 109.46797 * 149.72120 * 3 2 1 32 32 H 1.08998 * 109.46743 * 299.99557 * 4 3 2 33 33 H 1.08992 * 109.47200 * 59.99469 * 4 3 2 34 34 H 1.09003 * 109.46768 * 299.99822 * 5 4 3 35 35 H 1.09004 * 109.47413 * 59.99363 * 5 4 3 36 36 H 0.97004 * 119.99874 * 359.97438 * 6 5 4 37 37 H 1.08990 * 109.47127 * 299.99537 * 9 7 6 38 38 H 1.09000 * 109.46965 * 59.99473 * 9 7 6 39 39 H 0.96999 * 119.99935 * 179.97438 * 14 13 11 40 40 H 1.07998 * 120.87133 * 0.02562 * 22 21 19 41 41 H 1.08006 * 120.42397 * 180.02562 * 23 22 21 42 42 H 1.08005 * 119.03948 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4585 1.7070 -1.4424 5 6 3.2241 3.0317 -1.4424 6 7 3.4746 3.4510 -2.8236 7 6 4.1391 4.5974 -3.0698 8 8 4.5294 5.2820 -2.1481 9 6 4.3972 5.0284 -4.4907 10 16 5.3028 6.5956 -4.4907 11 6 5.4648 6.8554 -6.2258 12 1 5.0541 6.1372 -6.9200 13 6 6.1203 7.9830 -6.7005 14 7 6.6213 8.8581 -5.8544 15 14 6.2914 8.2587 -8.5401 16 1 5.6479 7.1374 -9.2707 17 1 5.6320 9.5361 -8.9127 18 1 7.7310 8.3216 -8.8993 19 6 2.1389 -1.1672 0.0056 20 8 3.3526 -1.1681 -0.0450 21 6 1.3979 -2.4518 0.0737 22 6 2.0827 -3.6586 0.2207 23 6 1.3427 -4.8310 0.2795 24 7 0.0249 -4.7656 0.1956 25 6 -0.5909 -3.6077 0.0570 26 7 0.0693 -2.4709 0.0013 27 1 -0.3633 -0.1079 -1.0220 28 1 -0.3633 -0.8311 0.6045 29 1 -0.3632 0.9391 0.4175 30 1 1.6064 2.0296 0.5096 31 1 3.1478 1.1396 0.5182 32 1 3.0498 0.9461 -1.9519 33 1 1.5083 1.8360 -1.9605 34 1 2.6332 3.7927 -0.9327 35 1 4.1744 2.9022 -0.9244 36 1 3.1627 2.9032 -3.5609 37 1 4.9881 4.2670 -4.9997 38 1 3.4473 5.1580 -5.0093 39 1 7.0797 9.6459 -6.1862 40 1 3.1604 -3.6796 0.2877 41 1 1.8369 -5.7846 0.3933 42 1 -1.6689 -3.5917 -0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687390424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:18 Heat of formation + Delta-G solvation = -5.561452 kcal Electronic energy + Delta-G solvation = -24888.649383 eV Core-core repulsion = 20996.136873 eV Total energy + Delta-G solvation = -3892.512510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90043 -40.03683 -39.11906 -36.68360 -35.23443 -34.35398 -32.74465 -32.42020 -31.89293 -29.28819 -27.36923 -26.78884 -25.48514 -25.08497 -24.53603 -22.20542 -20.89116 -20.18558 -18.48127 -18.09181 -17.82779 -16.74345 -16.39715 -16.34991 -16.08899 -16.03698 -15.58768 -15.49294 -15.01183 -14.79612 -14.52968 -14.42560 -14.07335 -13.83876 -13.49425 -13.09916 -12.95964 -12.76872 -12.59596 -12.39671 -11.86382 -11.80118 -11.52002 -11.36234 -11.09265 -11.05575 -11.00896 -10.89578 -10.74920 -10.41428 -9.79830 -9.71253 -9.44888 -9.11522 -9.06895 -8.87049 -8.21834 -6.48713 -6.20837 -3.91169 -0.13796 0.24583 2.18247 2.27956 3.05686 3.12206 3.16254 3.22248 3.23755 3.29451 3.34617 3.48502 3.72985 3.79899 4.16083 4.21288 4.37666 4.55876 4.68786 4.79792 4.86958 4.90418 4.91090 5.13661 5.14510 5.21329 5.25667 5.30268 5.45436 5.54707 5.65787 5.75579 5.82051 5.91968 5.94843 6.03410 6.15198 6.15724 6.62779 6.74844 7.25162 7.51832 7.60886 7.72313 8.36464 8.63209 9.24627 10.86684 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.001542 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.408369 B =18151.819232 C =18484.638668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.591 5.591 3 C 0.116 3.884 4 C -0.146 4.146 5 C 0.125 3.875 6 N -0.739 5.739 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.564 3.436 20 O -0.519 6.519 21 C 0.133 3.867 22 C -0.168 4.168 23 C 0.152 3.848 24 N -0.507 5.507 25 C 0.289 3.711 26 N -0.490 5.490 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.162 0.838 41 H 0.178 0.822 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.837 -27.892 13.846 35.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.323 5.323 3 C -0.007 4.007 4 C -0.184 4.184 5 C 0.000 4.000 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.349 3.651 20 O -0.394 6.394 21 C -0.014 4.014 22 C -0.191 4.191 23 C -0.014 4.014 24 N -0.221 5.221 25 C 0.001 3.999 26 N -0.207 5.207 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.180 0.820 41 H 0.195 0.805 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -16.416 -26.499 15.348 34.745 hybrid contribution 0.240 -0.902 -2.649 2.808 sum -16.176 -27.400 12.699 34.259 Atomic orbital electron populations 1.22510 0.77553 1.03891 1.03381 1.47745 1.08309 1.05309 1.70890 1.21542 0.98328 0.83843 0.96942 1.22125 1.01250 0.97421 0.97647 1.21131 1.00089 0.94655 0.84125 1.45975 1.60309 1.25029 1.08061 1.20305 0.76707 0.79907 0.91327 1.90698 1.49486 1.52932 1.46081 1.23531 1.05374 1.06401 0.95103 1.85395 1.70394 1.17805 1.09818 1.22916 1.42829 1.11042 0.91551 0.90875 1.24993 0.94680 0.94919 0.99012 1.70029 1.34964 1.11009 1.34281 0.86114 0.78033 0.78253 0.83068 1.19636 1.20564 1.20564 1.17871 0.86523 0.82840 0.77853 1.90844 1.12612 1.86494 1.49419 1.21649 0.90258 0.94691 0.94803 1.23027 1.04116 0.92914 0.99034 1.23430 0.89377 0.98862 0.89774 1.68381 1.11336 1.30421 1.11976 1.25202 1.01638 0.82442 0.90578 1.68853 1.07885 1.30595 1.13383 0.92260 0.87323 0.91649 0.89397 0.89117 0.90731 0.90955 0.91457 0.91348 0.76856 0.89221 0.89237 0.92241 0.82025 0.80457 0.77986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 9.45 59.85 0.57 0.95 16 2 N -0.59 -4.64 2.87 -182.46 -0.52 -5.16 16 3 C 0.12 0.90 5.43 -4.04 -0.02 0.88 16 4 C -0.15 -1.25 5.65 -26.73 -0.15 -1.40 16 5 C 0.12 1.44 5.67 -4.04 -0.02 1.41 16 6 N -0.74 -10.08 5.56 -60.29 -0.33 -10.41 16 7 C 0.53 10.12 7.85 -10.98 -0.09 10.03 16 8 O -0.52 -11.97 15.86 5.56 0.09 -11.88 16 9 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 12 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 15 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.56 5.38 7.67 -12.05 -0.09 5.29 16 20 O -0.52 -6.46 16.05 5.38 0.09 -6.37 16 21 C 0.13 1.02 6.66 -82.64 -0.55 0.47 16 22 C -0.17 -1.02 9.72 -38.90 -0.38 -1.40 16 23 C 0.15 0.72 11.31 -17.20 -0.19 0.53 16 24 N -0.51 -3.05 10.42 -14.59 -0.15 -3.20 16 25 C 0.29 1.48 12.27 -92.26 -1.13 0.35 16 26 N -0.49 -3.11 6.20 -11.14 -0.07 -3.18 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.11 0.59 5.17 -52.27 -0.27 0.32 16 29 H 0.06 0.27 7.82 -51.93 -0.41 -0.13 16 30 H 0.09 0.52 7.85 -51.93 -0.41 0.11 16 31 H 0.09 0.81 7.46 -51.93 -0.39 0.43 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.29 8.47 -40.82 -0.35 3.95 16 37 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 40 H 0.16 0.85 7.75 -52.49 -0.41 0.44 16 41 H 0.18 0.26 8.06 -52.48 -0.42 -0.17 16 42 H 0.20 0.36 8.06 -52.48 -0.42 -0.06 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -37.95 378.21 -8.93 -46.88 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.57 Total: -0.52 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.64 Total: 1.09 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.35 Total: -47.56 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.95 -8.93 -46.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687390424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.317 kcal (2) G-P(sol) polarization free energy of solvation -37.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds