Wall clock time and date at job start Tue Mar 31 2020 20:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 120.00094 * 2 1 4 4 C 1.52996 * 109.47114 * 269.72694 * 3 2 1 5 5 C 1.52998 * 109.47085 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47362 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00263 * 180.02562 * 6 5 4 8 8 O 1.21271 * 119.99829 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99875 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.46943 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00124 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99606 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99999 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00229 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99749 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47358 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47357 * 120.00079 * 15 13 11 18 18 H 1.48506 * 109.46802 * 239.99886 * 15 13 11 19 19 C 1.34776 * 119.99721 * 179.72582 * 2 1 3 20 20 O 1.21483 * 119.99678 * 177.24416 * 19 2 1 21 21 C 1.48452 * 120.00184 * 357.23839 * 19 2 1 22 22 C 1.39536 * 120.54817 * 186.71564 * 21 19 2 23 23 C 1.38763 * 118.26120 * 179.97438 * 22 21 19 24 24 N 1.32206 * 119.14862 * 359.97438 * 23 22 21 25 25 C 1.31879 * 121.03416 * 0.02562 * 24 23 22 26 26 N 1.31582 * 121.91733 * 359.72992 * 25 24 23 27 27 H 1.08996 * 109.46799 * 96.02951 * 1 2 3 28 28 H 1.09000 * 109.46889 * 216.03221 * 1 2 3 29 29 H 1.09001 * 109.46467 * 336.03105 * 1 2 3 30 30 H 1.09003 * 109.46855 * 29.72587 * 3 2 1 31 31 H 1.09001 * 109.46797 * 149.72120 * 3 2 1 32 32 H 1.08998 * 109.46743 * 299.99557 * 4 3 2 33 33 H 1.08992 * 109.47200 * 59.99469 * 4 3 2 34 34 H 1.09003 * 109.46768 * 299.99822 * 5 4 3 35 35 H 1.09004 * 109.47413 * 59.99363 * 5 4 3 36 36 H 0.97004 * 119.99874 * 359.97438 * 6 5 4 37 37 H 1.08990 * 109.47127 * 299.99537 * 9 7 6 38 38 H 1.09000 * 109.46965 * 59.99473 * 9 7 6 39 39 H 0.96999 * 119.99935 * 179.97438 * 14 13 11 40 40 H 1.07998 * 120.87133 * 0.02562 * 22 21 19 41 41 H 1.08006 * 120.42397 * 180.02562 * 23 22 21 42 42 H 1.08005 * 119.03948 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4585 1.7070 -1.4424 5 6 3.2241 3.0317 -1.4424 6 7 3.4746 3.4510 -2.8236 7 6 4.1391 4.5974 -3.0698 8 8 4.5294 5.2820 -2.1481 9 6 4.3972 5.0284 -4.4907 10 16 5.3028 6.5956 -4.4907 11 6 5.4648 6.8554 -6.2258 12 1 5.0541 6.1372 -6.9200 13 6 6.1203 7.9830 -6.7005 14 7 6.6213 8.8581 -5.8544 15 14 6.2914 8.2587 -8.5401 16 1 5.6479 7.1374 -9.2707 17 1 5.6320 9.5361 -8.9127 18 1 7.7310 8.3216 -8.8993 19 6 2.1389 -1.1672 0.0056 20 8 3.3526 -1.1681 -0.0450 21 6 1.3979 -2.4518 0.0737 22 6 2.0827 -3.6586 0.2207 23 6 1.3427 -4.8310 0.2795 24 7 0.0249 -4.7656 0.1956 25 6 -0.5909 -3.6077 0.0570 26 7 0.0693 -2.4709 0.0013 27 1 -0.3633 -0.1079 -1.0220 28 1 -0.3633 -0.8311 0.6045 29 1 -0.3632 0.9391 0.4175 30 1 1.6064 2.0296 0.5096 31 1 3.1478 1.1396 0.5182 32 1 3.0498 0.9461 -1.9519 33 1 1.5083 1.8360 -1.9605 34 1 2.6332 3.7927 -0.9327 35 1 4.1744 2.9022 -0.9244 36 1 3.1627 2.9032 -3.5609 37 1 4.9881 4.2670 -4.9997 38 1 3.4473 5.1580 -5.0093 39 1 7.0797 9.6459 -6.1862 40 1 3.1604 -3.6796 0.2877 41 1 1.8369 -5.7846 0.3933 42 1 -1.6689 -3.5917 -0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687390424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:17 Heat of formation + Delta-G solvation = -32.178062 kcal Electronic energy + Delta-G solvation = -24889.803566 eV Core-core repulsion = 20996.136873 eV Total energy + Delta-G solvation = -3893.666693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.36488 -40.76833 -40.48453 -37.48153 -36.20666 -34.96735 -34.59099 -33.21185 -32.89228 -30.70523 -27.94334 -27.77174 -27.42538 -25.52520 -25.18223 -23.02464 -21.91834 -21.18975 -19.83313 -19.01029 -18.57921 -17.81748 -17.55313 -17.10742 -16.89542 -16.86937 -16.66596 -16.58331 -16.36085 -15.74304 -15.64911 -15.51526 -14.83503 -14.78187 -14.59945 -14.38540 -14.11191 -13.89544 -13.36288 -13.28876 -13.16645 -12.99068 -12.90691 -12.70848 -12.58373 -11.95805 -11.91878 -11.74479 -11.72062 -11.60935 -11.16365 -11.01564 -10.85497 -10.28356 -10.17807 -10.14153 -9.76809 -8.67518 -8.35365 -6.13591 -0.64170 -0.12767 1.25988 1.41172 1.45765 1.55276 1.58617 1.59669 1.70029 2.25843 2.31223 2.70974 2.77386 2.98864 3.18482 3.31287 3.35337 3.71348 3.86131 3.88477 3.96396 4.02071 4.14866 4.27668 4.35880 4.44632 4.49847 4.52117 4.53944 4.60933 4.71876 4.85644 5.00657 5.05640 5.12786 5.33077 5.41088 5.41812 5.50204 5.70916 6.13930 6.19551 6.47821 6.77774 6.93112 7.06021 7.22140 8.74202 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.001542 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.408369 B =18151.819232 C =18484.638668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.588 5.588 3 C 0.115 3.885 4 C -0.128 4.128 5 C 0.125 3.875 6 N -0.714 5.714 7 C 0.533 3.467 8 O -0.566 6.566 9 C -0.130 4.130 10 S -0.152 6.152 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.557 3.443 20 O -0.560 6.560 21 C 0.114 3.886 22 C -0.174 4.174 23 C 0.160 3.840 24 N -0.522 5.522 25 C 0.287 3.713 26 N -0.492 5.492 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.415 0.585 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.164 0.836 41 H 0.210 0.790 42 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.996 -29.877 12.679 37.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.318 5.318 3 C -0.008 4.008 4 C -0.167 4.167 5 C 0.001 3.999 6 N -0.368 5.368 7 C 0.319 3.681 8 O -0.444 6.444 9 C -0.281 4.281 10 S 0.075 5.925 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.181 1.181 17 H -0.198 1.198 18 H -0.200 1.200 19 C 0.343 3.657 20 O -0.437 6.437 21 C -0.032 4.032 22 C -0.197 4.197 23 C -0.007 4.007 24 N -0.236 5.236 25 C 0.000 4.000 26 N -0.210 5.210 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.252 0.748 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.181 0.819 41 H 0.226 0.774 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -18.642 -28.530 14.177 36.912 hybrid contribution 0.816 -0.421 -2.198 2.382 sum -17.826 -28.951 11.979 36.048 Atomic orbital electron populations 1.22635 0.75896 1.04991 1.03763 1.47858 1.09280 1.04805 1.69829 1.21551 0.98328 0.84558 0.96378 1.21959 1.01280 0.95070 0.98353 1.21253 0.99978 0.96248 0.82465 1.45745 1.58063 1.23136 1.09860 1.20068 0.77039 0.80944 0.90082 1.90688 1.51879 1.54840 1.46987 1.23376 1.05404 1.02478 0.96872 1.85572 1.72525 1.23415 1.10938 1.23246 1.43062 1.11611 0.91553 0.89907 1.26135 0.93953 0.94409 1.04653 1.70189 1.35897 1.11726 1.36949 0.84892 0.78246 0.78631 0.76080 1.18068 1.19819 1.19957 1.18234 0.86268 0.83880 0.77269 1.90812 1.14268 1.87177 1.51488 1.21524 0.91024 0.94284 0.96387 1.23155 1.04399 0.92994 0.99169 1.23936 0.89055 0.99579 0.88160 1.68469 1.11872 1.30817 1.12411 1.25837 1.02870 0.81871 0.89428 1.68853 1.07162 1.31216 1.13746 0.91941 0.87168 0.89865 0.86983 0.90756 0.91946 0.89098 0.91042 0.92754 0.74785 0.87386 0.87026 0.91966 0.81877 0.77367 0.75052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 9.45 127.77 1.21 1.82 16 2 N -0.59 -8.57 2.87 -849.48 -2.44 -11.01 16 3 C 0.11 1.65 5.43 86.38 0.47 2.12 16 4 C -0.13 -1.98 5.65 30.59 0.17 -1.81 16 5 C 0.12 2.73 5.67 86.38 0.49 3.22 16 6 N -0.71 -18.31 5.56 -463.07 -2.57 -20.88 16 7 C 0.53 20.00 7.85 87.66 0.69 20.69 16 8 O -0.57 -26.62 15.86 -3.00 -0.05 -26.67 16 9 C -0.13 -5.22 6.16 71.24 0.44 -4.79 16 10 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 11 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 12 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.76 5.49 84.86 0.47 1.22 16 14 N -0.91 -56.34 13.22 21.65 0.29 -56.05 16 15 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 16 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 C 0.56 10.58 7.67 86.97 0.67 11.25 16 20 O -0.56 -14.38 16.05 -3.66 -0.06 -14.44 16 21 C 0.11 1.69 6.66 41.99 0.28 1.97 16 22 C -0.17 -2.00 9.72 22.71 0.22 -1.78 16 23 C 0.16 1.25 11.31 84.76 0.96 2.20 16 24 N -0.52 -5.27 10.42 -200.08 -2.09 -7.36 16 25 C 0.29 2.38 12.27 180.92 2.22 4.60 16 26 N -0.49 -5.55 6.20 -189.16 -1.17 -6.73 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.11 1.00 5.17 -3.06 -0.02 0.99 16 29 H 0.08 0.46 7.82 -2.39 -0.02 0.44 16 30 H 0.11 1.07 7.85 -2.39 -0.02 1.05 16 31 H 0.07 1.34 7.46 -2.39 -0.02 1.33 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.42 7.86 8.47 -92.71 -0.79 7.08 16 37 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 38 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.16 1.74 7.75 -2.91 -0.02 1.71 16 41 H 0.21 0.10 8.06 -2.91 -0.02 0.08 16 42 H 0.23 0.22 8.06 -2.91 -0.02 0.19 16 Total: -1.00 -85.15 378.21 1.96 -83.19 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.27 Total: 13.89 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 8.92 Total: 9.84 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -7.99 Total: -102.03 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.11 Total: -41.11 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -85.15 1.96 -83.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687390424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.011 kcal (2) G-P(sol) polarization free energy of solvation -85.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds