Wall clock time and date at job start Tue Mar 31 2020 20:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47402 * 2 1 4 4 C 1.35858 * 126.18421 * 270.16821 * 3 2 1 5 5 N 1.30150 * 109.03532 * 180.24918 * 4 3 2 6 6 C 1.35737 * 108.98539 * 359.75670 * 5 4 3 7 7 C 1.47327 * 126.21974 * 179.97438 * 6 5 4 8 8 O 1.21616 * 120.00303 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99804 * 0.02562 * 7 6 5 10 10 C 1.47065 * 136.05903 * 359.63185 * 9 7 6 11 11 C 1.53753 * 87.88920 * 152.96249 * 10 9 7 12 12 N 1.46498 * 114.39024 * 272.67635 * 11 10 9 13 13 C 1.34776 * 119.99770 * 248.58421 * 12 11 10 14 14 O 1.21282 * 120.00135 * 359.97438 * 13 12 11 15 15 C 1.50708 * 120.00121 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47254 * 179.97438 * 15 13 12 17 17 C 1.76199 * 99.99954 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99753 * 0.02562 * 17 16 15 19 19 C 1.38791 * 119.99985 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00001 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99941 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47001 * 89.99937 * 21 19 17 23 23 H 1.48507 * 109.47090 * 209.99749 * 21 19 17 24 24 H 1.48497 * 109.47411 * 329.99968 * 21 19 17 25 25 C 1.47069 * 136.05646 * 179.97438 * 9 7 6 26 26 C 1.35913 * 126.18266 * 89.99812 * 3 2 1 27 27 H 1.09004 * 109.46693 * 59.99937 * 1 2 3 28 28 H 1.08998 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46821 * 300.00473 * 1 2 3 30 30 H 1.09000 * 109.47102 * 239.99874 * 2 1 3 31 31 H 1.09000 * 109.47354 * 120.00346 * 2 1 3 32 32 H 1.08008 * 125.48221 * 0.02562 * 4 3 2 33 33 H 1.09008 * 113.46761 * 267.69765 * 10 9 7 34 34 H 1.09004 * 113.46904 * 38.12882 * 10 9 7 35 35 H 1.08995 * 114.08790 * 139.78386 * 11 10 9 36 36 H 0.96997 * 120.00529 * 68.58811 * 12 11 10 37 37 H 1.09000 * 109.46563 * 300.00268 * 15 13 12 38 38 H 1.08995 * 109.46845 * 59.99810 * 15 13 12 39 39 H 0.97002 * 120.00179 * 179.97438 * 20 19 17 40 40 H 1.08994 * 113.46647 * 321.87326 * 25 9 7 41 41 H 1.09003 * 113.46088 * 92.30568 * 25 9 7 42 42 H 1.08002 * 126.61115 * 0.02886 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2827 2.1385 -1.0965 5 7 2.7034 3.3088 -0.7128 6 6 2.7200 3.3491 0.6439 7 6 3.1324 4.4929 1.4758 8 8 3.1031 4.4048 2.6884 9 7 3.5423 5.6370 0.8931 10 6 3.7197 6.1189 -0.4850 11 6 3.4833 7.5434 0.0432 12 7 2.0751 7.9444 0.0923 13 6 1.6163 8.8974 -0.7431 14 8 2.3693 9.4232 -1.5352 15 6 0.1678 9.3104 -0.6922 16 16 -0.1358 10.5995 -1.9260 17 6 -1.8533 10.8843 -1.6547 18 1 -2.3810 10.3220 -0.8985 19 6 -2.5280 11.8310 -2.4128 20 7 -3.8112 12.0434 -2.2105 21 14 -1.6153 12.8029 -3.7212 22 1 -1.6865 12.0785 -5.0157 23 1 -2.2396 14.1423 -3.8686 24 1 -0.1944 12.9605 -3.3198 25 6 4.0146 6.9508 1.3554 26 6 2.2858 2.1377 1.0970 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.1663 1.8193 -2.1218 33 1 4.7259 5.9616 -0.8737 34 1 2.9443 5.7736 -1.1689 35 1 4.1328 8.2967 -0.4026 36 1 1.4729 7.5242 0.7261 37 1 -0.4636 8.4476 -0.9046 38 1 -0.0654 9.6957 0.3003 39 1 -4.2826 12.7054 -2.7401 40 1 3.4904 7.3140 2.2393 41 1 5.0985 7.0128 1.4523 42 1 2.1797 1.8363 2.1287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688592821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:34 Heat of formation + Delta-G solvation = 7.513581 kcal Electronic energy + Delta-G solvation = -25732.993296 eV Core-core repulsion = 21841.047762 eV Total energy + Delta-G solvation = -3891.945534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.12745 -41.66633 -40.16894 -38.73410 -35.93369 -34.77847 -34.65238 -31.68649 -31.23309 -30.73383 -29.36227 -27.85112 -27.04755 -25.02367 -24.14804 -22.64085 -21.85883 -21.65981 -20.07130 -19.88150 -18.60050 -18.05163 -17.58626 -17.24704 -17.05550 -16.84424 -16.63370 -16.43744 -16.15849 -15.60104 -15.34340 -15.00685 -14.93079 -14.74995 -14.65668 -14.37374 -14.29542 -13.95881 -13.51077 -13.43487 -13.32826 -13.04997 -12.99656 -12.98741 -12.65064 -12.23951 -12.06889 -11.85686 -11.36818 -11.16260 -11.07921 -11.01688 -10.75192 -10.54402 -10.17680 -9.93437 -9.55063 -8.98607 -8.50916 -6.21831 0.52073 0.98073 1.33114 1.42125 1.47411 1.50465 1.55928 1.60150 1.96126 2.14308 2.26438 2.49960 2.70623 2.87281 3.22850 3.40086 3.69893 3.78101 3.84182 3.88878 4.02662 4.08696 4.21360 4.30971 4.34452 4.39841 4.45869 4.49119 4.62443 4.65348 4.70330 4.81230 4.82454 4.89802 5.12980 5.21664 5.43402 5.45388 5.71033 6.11713 6.11823 6.35725 6.60669 6.75156 6.93845 7.11950 7.15019 8.61719 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.002368 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.575559 B =11821.876786 C =13084.929767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.451 5.451 4 C 0.194 3.806 5 N -0.492 5.492 6 C -0.094 4.094 7 C 0.624 3.376 8 O -0.585 6.585 9 N -0.638 5.638 10 C 0.106 3.894 11 C 0.106 3.894 12 N -0.696 5.696 13 C 0.546 3.454 14 O -0.550 6.550 15 C -0.114 4.114 16 S -0.164 6.164 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.044 3.956 20 N -0.919 5.919 21 Si 0.917 3.083 22 H -0.261 1.261 23 H -0.260 1.260 24 H -0.234 1.234 25 C 0.104 3.896 26 C 0.040 3.960 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.244 0.756 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.410 0.590 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.277 0.723 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.991 -27.960 4.946 32.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.132 5.132 4 C -0.091 4.091 5 N -0.211 5.211 6 C -0.222 4.222 7 C 0.416 3.584 8 O -0.466 6.466 9 N -0.371 5.371 10 C -0.018 4.018 11 C -0.001 4.001 12 N -0.347 5.347 13 C 0.332 3.668 14 O -0.428 6.428 15 C -0.265 4.265 16 S 0.062 5.938 17 C -0.679 4.679 18 H 0.077 0.923 19 C -0.162 4.162 20 N -0.557 5.557 21 Si 0.738 3.262 22 H -0.186 1.186 23 H -0.184 1.184 24 H -0.158 1.158 25 C -0.019 4.019 26 C -0.101 4.101 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.128 0.872 32 H 0.260 0.740 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.147 0.853 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 17.170 -26.725 3.816 31.993 hybrid contribution -1.871 -0.920 1.346 2.482 sum 15.299 -27.645 5.162 32.015 Atomic orbital electron populations 1.22177 0.93799 1.04405 1.02381 1.22317 0.95719 0.77199 1.07246 1.45962 1.47320 1.14237 1.05692 1.25898 1.01377 0.86650 0.95148 1.70569 1.19467 1.21014 1.10045 1.20379 1.14920 0.95733 0.91201 1.16716 0.76084 0.80118 0.85508 1.90764 1.58510 1.82652 1.14697 1.49450 1.63733 1.12658 1.11262 1.23624 1.03727 0.89902 0.84508 1.22342 0.83131 0.96705 0.97905 1.45348 1.10897 1.39471 1.39022 1.19822 0.88577 0.78601 0.79831 1.90689 1.58351 1.55094 1.38623 1.23270 0.96534 1.02528 1.04180 1.84599 1.10733 1.48551 1.49896 1.22479 0.93810 1.26767 1.24841 0.92275 1.25610 0.95193 0.96724 0.98637 1.70023 1.09513 1.34602 1.41527 0.85835 0.81239 0.79204 0.79898 1.18579 1.18381 1.15756 1.23547 1.02214 0.78664 0.97467 1.22880 1.01635 0.91299 0.94316 0.92364 0.88269 0.93286 0.85665 0.87162 0.73989 0.86658 0.90338 0.84931 0.75407 0.87402 0.86988 0.91358 0.89884 0.85331 0.78587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.24 71.98 0.74 0.08 16 2 C 0.10 0.24 6.85 86.38 0.59 0.83 16 3 N -0.45 -5.05 2.74 -527.90 -1.45 -6.50 16 4 C 0.19 2.65 12.56 180.10 2.26 4.91 16 5 N -0.49 -10.63 9.77 -188.82 -1.85 -12.47 16 6 C -0.09 -2.22 6.94 40.51 0.28 -1.94 16 7 C 0.62 16.97 8.06 86.63 0.70 17.67 16 8 O -0.58 -19.00 17.66 -4.08 -0.07 -19.07 16 9 N -0.64 -14.37 3.69 -861.92 -3.18 -17.54 16 10 C 0.11 2.11 7.61 83.26 0.63 2.75 16 11 C 0.11 2.14 4.61 45.54 0.21 2.35 16 12 N -0.70 -17.41 5.40 -441.56 -2.38 -19.79 16 13 C 0.55 18.55 7.85 87.66 0.69 19.24 16 14 O -0.55 -22.35 15.46 -3.04 -0.05 -22.40 16 15 C -0.11 -4.38 6.16 71.24 0.44 -3.94 16 16 S -0.16 -8.29 18.55 -56.49 -1.05 -9.33 16 17 C -0.53 -31.23 10.04 67.95 0.68 -30.54 16 18 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 19 C 0.04 2.58 5.50 84.86 0.47 3.04 16 20 N -0.92 -56.43 13.97 21.65 0.30 -56.12 16 21 Si 0.92 44.97 27.74 68.60 1.90 46.88 16 22 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.23 -11.36 6.74 99.48 0.67 -10.69 16 25 C 0.10 1.81 8.38 83.17 0.70 2.51 16 26 C 0.04 0.69 11.29 83.64 0.94 1.63 16 27 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.24 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 1.88 7.43 -2.38 -0.02 1.87 16 35 H 0.13 2.67 7.45 -2.39 -0.02 2.65 16 36 H 0.41 9.26 8.76 -92.71 -0.81 8.45 16 37 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 38 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 39 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -84.57 379.52 1.72 -82.85 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.20 Total: 14.94 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 9.33 Total: 18.57 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -8.55 Total: -112.43 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.12 Total: -41.47 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.05 Total: -9.33 kcal Total: -84.57 1.72 -82.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688592821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.366 kcal (2) G-P(sol) polarization free energy of solvation -84.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds