Wall clock time and date at job start Tue Mar 31 2020 20:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.40029 * 2 1 4 4 N 1.30497 * 108.69942 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.25816 * 359.74946 * 4 3 2 6 6 C 1.34675 * 108.01726 * 0.40569 * 5 4 3 7 7 C 1.50701 * 126.58859 * 179.87037 * 6 5 4 8 8 C 1.50703 * 109.47064 * 84.68661 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.47071 * 136.05157 * 359.62556 * 10 8 7 12 12 C 1.53762 * 87.88358 * 152.97035 * 11 10 8 13 13 N 1.46501 * 114.38872 * 272.67216 * 12 11 10 14 14 C 1.34775 * 120.00459 * 248.58726 * 13 12 11 15 15 O 1.21286 * 119.99427 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00676 * 180.02562 * 14 13 12 17 17 S 1.80994 * 109.47493 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00080 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00270 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00154 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99628 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00294 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47215 * 89.99481 * 22 20 18 24 24 H 1.48489 * 109.47469 * 209.99956 * 22 20 18 25 25 H 1.48505 * 109.47053 * 330.00100 * 22 20 18 26 26 C 1.47065 * 136.06111 * 180.02562 * 10 8 7 27 27 H 1.09003 * 109.46993 * 270.00115 * 1 2 3 28 28 H 1.08999 * 109.46823 * 29.99295 * 1 2 3 29 29 H 1.09000 * 109.47417 * 149.99776 * 1 2 3 30 30 H 1.07995 * 125.64616 * 359.97438 * 3 2 1 31 31 H 1.08001 * 125.99409 * 180.25185 * 5 4 3 32 32 H 1.09002 * 109.47060 * 204.68625 * 7 6 5 33 33 H 1.09001 * 109.47380 * 324.68712 * 7 6 5 34 34 H 1.09001 * 113.46536 * 267.69429 * 11 10 8 35 35 H 1.08993 * 113.47241 * 38.14077 * 11 10 8 36 36 H 1.08997 * 114.26974 * 139.79349 * 12 11 10 37 37 H 0.97001 * 120.00136 * 68.59132 * 13 12 11 38 38 H 1.08999 * 109.47412 * 300.00287 * 16 14 13 39 39 H 1.09001 * 109.46742 * 59.99593 * 16 14 13 40 40 H 0.97006 * 119.99903 * 180.02562 * 21 20 18 41 41 H 1.08997 * 113.46365 * 321.86138 * 26 10 8 42 42 H 1.08999 * 113.46854 * 92.24224 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0006 5 6 3.5461 -0.6506 0.0046 6 6 2.2772 -1.1018 -0.0005 7 6 1.8362 -2.5429 -0.0003 8 6 1.8085 -3.0595 1.4151 9 8 2.1170 -2.3295 2.3332 10 7 1.4420 -4.3330 1.6607 11 6 1.0091 -5.4844 0.8545 12 6 1.5721 -6.3958 1.9576 13 7 2.9934 -6.7183 1.8091 14 6 3.3711 -7.9760 1.5060 15 8 2.5341 -8.8409 1.3558 16 6 4.8331 -8.3079 1.3538 17 16 5.0147 -10.0629 0.9500 18 6 6.7695 -10.1701 0.8335 19 1 7.3764 -9.2922 0.9991 20 6 7.3721 -11.3828 0.5288 21 7 6.6324 -12.4529 0.3274 22 14 9.2325 -11.4967 0.4059 23 1 9.7968 -11.8341 1.7375 24 1 9.6004 -12.5538 -0.5699 25 1 9.7793 -10.1926 -0.0474 26 6 1.2922 -5.1807 2.8530 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5139 30 1 1.9335 2.1143 -0.0004 31 1 4.4368 -1.2613 0.0093 32 1 0.8390 -2.6178 -0.4340 33 1 2.5345 -3.1366 -0.5902 34 1 -0.0730 -5.5546 0.7440 35 1 1.5370 -5.5727 -0.0949 36 1 0.9538 -7.2658 2.1789 37 1 3.6628 -6.0265 1.9289 38 1 5.2613 -7.7044 0.5534 39 1 5.3532 -8.0945 2.2876 40 1 7.0535 -13.3006 0.1149 41 1 2.0613 -5.0101 3.6063 42 1 0.2849 -5.1701 3.2694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688592898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:01 Heat of formation + Delta-G solvation = 38.822440 kcal Electronic energy + Delta-G solvation = -25634.209758 eV Core-core repulsion = 21743.621878 eV Total energy + Delta-G solvation = -3890.587880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.40643 -40.95493 -39.09638 -37.89941 -34.39566 -33.64059 -32.64429 -32.45812 -30.20329 -28.72588 -27.40602 -27.05285 -26.25205 -25.51349 -22.42422 -21.73492 -20.81894 -20.34935 -19.18877 -17.97052 -17.54672 -17.40563 -16.83729 -16.22652 -16.11988 -15.81600 -15.62964 -15.07759 -14.87946 -14.82508 -14.25597 -14.02003 -13.67329 -13.56580 -13.38177 -13.31743 -13.23058 -13.17215 -13.00068 -12.60090 -12.42181 -12.31452 -11.99983 -11.32240 -11.08523 -11.05293 -10.79059 -10.26956 -10.19688 -9.86135 -9.85013 -9.61548 -9.20448 -9.09978 -9.04516 -8.62809 -8.29673 -6.54675 -6.25026 -3.96054 1.62659 2.24653 2.36105 2.53378 2.85513 2.87488 2.97177 3.21170 3.25338 3.29356 3.57415 3.96629 4.12349 4.17439 4.21465 4.23487 4.42869 4.51456 4.57214 4.61845 4.84536 4.92920 4.96446 4.97612 4.99894 5.10561 5.13440 5.15045 5.27463 5.38124 5.45649 5.47622 5.71421 5.81475 6.00109 6.08154 6.43829 6.45804 6.87203 7.29279 7.52354 7.57270 7.78088 7.81490 8.32260 8.43420 9.20759 10.82327 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.002087 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.873412 B =13414.392959 C =14693.138760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.456 5.456 3 C 0.183 3.817 4 N -0.493 5.493 5 C -0.004 4.004 6 C -0.012 4.012 7 C -0.057 4.057 8 C 0.542 3.458 9 O -0.527 6.527 10 N -0.650 5.650 11 C 0.080 3.920 12 C 0.115 3.885 13 N -0.718 5.718 14 C 0.538 3.462 15 O -0.513 6.513 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.095 3.905 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.205 0.795 31 H 0.168 0.832 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.402 0.598 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.269 0.731 41 H 0.085 0.915 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.714 23.157 -0.758 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.140 5.140 3 C -0.099 4.099 4 N -0.210 5.210 5 C -0.152 4.152 6 C -0.127 4.127 7 C -0.098 4.098 8 C 0.331 3.669 9 O -0.402 6.402 10 N -0.387 5.387 11 C -0.044 4.044 12 C 0.007 3.993 13 N -0.372 5.372 14 C 0.325 3.675 15 O -0.386 6.386 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.028 4.028 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.221 0.779 31 H 0.186 0.814 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.237 0.763 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.336 22.661 -0.612 28.539 hybrid contribution 1.570 0.826 0.142 1.780 sum -15.766 23.488 -0.470 28.292 Atomic orbital electron populations 1.22038 0.76865 1.04529 1.03747 1.45203 1.07427 1.06680 1.54653 1.24911 0.85635 0.93283 1.06050 1.70285 1.19358 1.11918 1.19453 1.22035 0.95595 0.91114 1.06497 1.20369 0.91412 0.88259 1.12643 1.19920 1.04310 0.90612 0.94946 1.20079 0.76792 0.78963 0.91086 1.90768 1.48078 1.54903 1.46470 1.49741 1.67016 1.10066 1.11862 1.23762 1.00816 0.82086 0.97752 1.22107 0.84817 0.97250 0.95141 1.45643 1.06223 1.11458 1.73862 1.20382 0.91148 0.81127 0.74886 1.90710 1.53352 1.46606 1.47949 1.23538 0.93894 1.07871 1.05198 1.85367 1.08825 0.97643 1.91339 1.22863 0.91375 0.98403 1.55782 0.90872 1.24994 0.99346 0.94712 0.94520 1.70013 1.35627 1.00098 1.44533 0.86161 0.83089 0.78074 0.78157 1.20245 1.20742 1.19662 1.23424 1.02924 0.85806 0.90685 0.90453 0.89185 0.89877 0.77855 0.81439 0.88430 0.86370 0.88421 0.89533 0.85364 0.76342 0.89060 0.89031 0.92155 0.89696 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.00 59.85 0.66 0.95 16 2 N -0.46 -3.81 3.15 -121.36 -0.38 -4.19 16 3 C 0.18 1.70 12.56 -90.38 -1.14 0.56 16 4 N -0.49 -6.22 11.25 -14.66 -0.16 -6.39 16 5 C 0.00 -0.05 11.79 -17.81 -0.21 -0.26 16 6 C -0.01 -0.12 5.45 -81.60 -0.44 -0.57 16 7 C -0.06 -0.42 5.86 -29.03 -0.17 -0.59 16 8 C 0.54 5.50 8.07 -10.98 -0.09 5.41 16 9 O -0.53 -7.69 16.81 5.56 0.09 -7.60 16 10 N -0.65 -5.36 3.69 -185.04 -0.68 -6.04 16 11 C 0.08 0.53 8.25 -8.36 -0.07 0.46 16 12 C 0.11 1.01 4.62 -67.67 -0.31 0.70 16 13 N -0.72 -8.24 5.40 -53.48 -0.29 -8.53 16 14 C 0.54 8.94 7.85 -10.99 -0.09 8.85 16 15 O -0.51 -10.37 15.45 5.55 0.09 -10.28 16 16 C -0.15 -2.92 6.16 36.00 0.22 -2.70 16 17 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 18 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.67 13.22 55.49 0.73 -24.94 16 22 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.09 0.73 8.38 -8.49 -0.07 0.65 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.08 0.23 7.12 -51.93 -0.37 -0.14 16 30 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.10 0.48 7.09 -51.93 -0.37 0.11 16 33 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.13 1.20 7.45 -51.93 -0.39 0.82 16 37 H 0.40 4.04 8.76 -40.82 -0.36 3.69 16 38 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 39 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -39.33 381.33 -9.28 -48.61 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.68 Total: 0.43 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.51 Total: 0.80 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.78 Total: -50.09 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.18 Total: -17.88 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.33 -9.28 -48.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688592898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.428 kcal (2) G-P(sol) polarization free energy of solvation -39.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds