Wall clock time and date at job start Tue Mar 31 2020 20:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00124 * 2 1 4 4 C 1.52997 * 109.47281 * 270.00299 * 3 2 1 5 5 N 1.46507 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99818 * 89.99866 * 5 4 3 7 7 C 1.34780 * 120.00152 * 270.00397 * 5 4 3 8 8 O 1.21519 * 119.99779 * 5.67388 * 7 5 4 9 9 C 1.48155 * 119.99861 * 185.67958 * 7 5 4 10 10 C 1.39716 * 120.18090 * 186.26922 * 9 7 5 11 11 C 1.38822 * 117.90019 * 179.75900 * 10 9 7 12 12 C 1.38577 * 118.06307 * 0.52874 * 11 10 9 13 13 N 1.32166 * 120.07002 * 359.70026 * 12 11 10 14 14 N 1.28351 * 122.30120 * 0.02825 * 13 12 11 15 15 C 1.34780 * 120.00029 * 180.02562 * 2 1 3 16 16 O 1.21279 * 119.99911 * 179.97438 * 15 2 1 17 17 C 1.50704 * 119.99847 * 359.97438 * 15 2 1 18 18 S 1.81000 * 109.46946 * 180.02562 * 17 15 2 19 19 C 1.76197 * 99.99923 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00050 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99801 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99791 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00050 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47151 * 90.00041 * 23 21 19 25 25 H 1.48498 * 109.46927 * 209.99985 * 23 21 19 26 26 H 1.48498 * 109.47008 * 329.99893 * 23 21 19 27 27 H 1.09003 * 109.47253 * 89.99724 * 1 2 3 28 28 H 1.09007 * 109.47178 * 209.99983 * 1 2 3 29 29 H 1.08999 * 109.47259 * 329.99298 * 1 2 3 30 30 H 1.09000 * 109.47372 * 149.99829 * 3 2 1 31 31 H 1.09007 * 109.47073 * 30.00335 * 3 2 1 32 32 H 1.09002 * 109.47356 * 60.00269 * 4 3 2 33 33 H 1.08996 * 109.47389 * 299.99675 * 4 3 2 34 34 H 1.09000 * 109.46906 * 95.49337 * 6 5 4 35 35 H 1.09002 * 109.47051 * 215.49326 * 6 5 4 36 36 H 1.08997 * 109.47178 * 335.49306 * 6 5 4 37 37 H 1.08004 * 121.04594 * 0.02562 * 10 9 7 38 38 H 1.07998 * 120.96611 * 180.23442 * 11 10 9 39 39 H 1.08000 * 119.96061 * 179.72853 * 12 11 10 40 40 H 1.08991 * 109.47200 * 300.00661 * 17 15 2 41 41 H 1.08998 * 109.46432 * 60.00747 * 17 15 2 42 42 H 0.97008 * 120.00230 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1845 2.9795 -1.4424 6 6 4.6495 2.9800 -1.4423 7 6 2.5102 4.1465 -1.4424 8 8 1.2994 4.1485 -1.3384 9 6 3.2450 5.4266 -1.5694 10 6 2.5674 6.6415 -1.4390 11 6 3.3033 7.8122 -1.5615 12 6 4.6612 7.7050 -1.8164 13 7 5.2216 6.5135 -1.9301 14 7 4.5503 5.4258 -1.8131 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8481 -0.0005 19 6 1.4415 -5.2082 -0.0013 20 1 0.3762 -5.0305 -0.0020 21 6 1.9283 -6.5081 -0.0020 22 7 1.0916 -7.5241 -0.0031 23 14 3.7708 -6.8154 -0.0030 24 1 4.2597 -6.8975 1.3968 25 1 4.0592 -8.0925 -0.7036 26 1 4.4582 -5.7006 -0.7028 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 3.1499 1.1384 0.5139 31 1 1.6084 2.0284 0.5139 32 1 1.5000 1.8408 -1.9563 33 1 3.0415 0.9509 -1.9563 34 1 5.0129 3.0785 -2.4652 35 1 5.0124 3.8169 -0.8456 36 1 5.0131 2.0451 -1.0159 37 1 1.5053 6.6688 -1.2446 38 1 2.8303 8.7784 -1.4657 39 1 5.2621 8.5962 -1.9218 40 1 0.7590 -2.5302 0.8896 41 1 0.7585 -2.5298 -0.8904 42 1 1.4317 -8.4326 -0.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689061185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:59 Heat of formation + Delta-G solvation = 15.922730 kcal Electronic energy + Delta-G solvation = -25850.215014 eV Core-core repulsion = 21958.634129 eV Total energy + Delta-G solvation = -3891.580886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77095 -40.07485 -39.37325 -36.40179 -35.29185 -33.74347 -33.34167 -32.43736 -30.98560 -28.71215 -27.19817 -26.73905 -25.66996 -25.34740 -25.13476 -23.36832 -20.61379 -19.33306 -18.40048 -17.72888 -17.64632 -17.26749 -16.86879 -16.43466 -16.32610 -15.71397 -15.52255 -15.00151 -14.91138 -14.74590 -14.15253 -13.88961 -13.80703 -13.49058 -13.39752 -13.18647 -13.03439 -12.80558 -12.76848 -12.54811 -12.30958 -12.01533 -11.66382 -11.26832 -11.10770 -11.00523 -10.87600 -10.65449 -10.59699 -10.41273 -10.25895 -9.85941 -9.53426 -9.28163 -9.00177 -8.53374 -8.48840 -6.92095 -6.28696 -4.00539 -0.10889 0.15848 2.16634 2.32443 2.77088 2.90278 3.08739 3.21834 3.33223 3.36612 3.50623 3.60751 3.81640 3.93940 4.09952 4.29834 4.33148 4.46869 4.58452 4.79351 4.91541 5.03682 5.06586 5.10174 5.11166 5.19762 5.25333 5.32345 5.40499 5.43819 5.48828 5.58226 5.69105 5.77819 5.79782 5.85647 6.01395 6.07171 6.53554 6.89391 7.40059 7.56656 7.94252 7.98370 8.39199 8.41904 9.17450 10.80458 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029839 B = 0.002015 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.143014 B =13891.337719 C =14668.123296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.620 5.620 3 C 0.106 3.894 4 C 0.099 3.901 5 N -0.588 5.588 6 C 0.081 3.919 7 C 0.571 3.429 8 O -0.528 6.528 9 C 0.025 3.975 10 C -0.065 4.065 11 C -0.122 4.122 12 C 0.056 3.944 13 N -0.246 5.246 14 N -0.203 5.203 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.178 0.822 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 32.976 -2.843 33.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.356 5.356 3 C -0.018 4.018 4 C -0.024 4.024 5 N -0.319 5.319 6 C -0.062 4.062 7 C 0.356 3.644 8 O -0.404 6.404 9 C -0.121 4.121 10 C -0.094 4.094 11 C -0.151 4.151 12 C -0.106 4.106 13 N -0.088 5.088 14 N -0.050 5.050 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.195 0.805 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.666 31.845 -3.052 32.330 hybrid contribution -2.109 0.560 0.227 2.194 sum 2.557 32.406 -2.825 32.629 Atomic orbital electron populations 1.21850 0.79048 1.03406 1.02146 1.47762 1.07151 1.05251 1.75459 1.21696 0.98517 0.85123 0.96505 1.22030 0.98125 0.83914 0.98353 1.47697 1.08422 1.05197 1.70632 1.22240 0.77178 1.03439 1.03322 1.17656 0.86432 0.82660 0.77699 1.90810 1.12884 1.86553 1.50105 1.22839 0.93329 0.95524 1.00425 1.22455 1.02879 0.91223 0.92823 1.22499 0.95050 1.00265 0.97276 1.24548 0.94141 0.98610 0.93331 1.73216 1.30555 0.95460 1.09578 1.73721 1.04834 1.20179 1.06287 1.20370 0.87949 0.84646 0.75099 1.90686 1.13659 1.86839 1.47947 1.23316 1.03089 0.95037 1.05705 1.84772 1.11972 0.97543 1.97422 1.22308 0.94872 0.90882 1.58792 0.89383 1.24714 0.98540 0.94877 0.93187 1.69938 1.34791 0.98873 1.48050 0.86731 0.85363 0.79814 0.79921 1.19225 1.19960 1.15918 0.92441 0.90406 0.91087 0.89587 0.90321 0.89474 0.89144 0.91476 0.89375 0.90633 0.81937 0.82338 0.80471 0.88466 0.88400 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.28 59.85 0.62 1.44 16 2 N -0.62 -8.42 2.87 -181.57 -0.52 -8.94 16 3 C 0.11 1.29 5.77 -4.05 -0.02 1.27 16 4 C 0.10 1.14 5.66 -4.04 -0.02 1.12 16 5 N -0.59 -6.32 2.87 -182.57 -0.52 -6.84 16 6 C 0.08 0.76 9.12 59.85 0.55 1.31 16 7 C 0.57 6.33 7.65 -12.19 -0.09 6.24 16 8 O -0.53 -6.86 16.05 5.35 0.09 -6.78 16 9 C 0.02 0.23 6.63 -82.83 -0.55 -0.32 16 10 C -0.06 -0.42 9.73 -38.81 -0.38 -0.79 16 11 C -0.12 -0.47 10.20 -39.24 -0.40 -0.87 16 12 C 0.06 0.28 11.31 -17.28 -0.20 0.08 16 13 N -0.25 -2.12 11.51 30.58 0.35 -1.76 16 14 N -0.20 -1.96 7.42 33.32 0.25 -1.71 16 15 C 0.53 9.47 7.69 -10.98 -0.08 9.38 16 16 O -0.52 -10.85 15.44 5.56 0.09 -10.76 16 17 C -0.12 -2.34 4.71 36.01 0.17 -2.17 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 23 Si 0.86 21.77 27.74 -169.99 -4.71 17.05 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.57 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.81 6.44 -51.92 -0.33 0.47 16 29 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 30 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 31 H 0.08 0.88 7.89 -51.92 -0.41 0.47 16 32 H 0.09 1.02 7.51 -51.93 -0.39 0.63 16 33 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 34 H 0.07 0.62 8.00 -51.93 -0.42 0.20 16 35 H 0.09 0.82 5.82 -51.93 -0.30 0.52 16 36 H 0.07 0.71 8.03 -51.93 -0.42 0.30 16 37 H 0.16 0.86 7.73 -52.48 -0.41 0.46 16 38 H 0.16 0.04 8.06 -52.49 -0.42 -0.39 16 39 H 0.18 0.22 8.06 -52.49 -0.42 -0.20 16 40 H 0.10 1.76 7.40 -51.92 -0.38 1.37 16 41 H 0.10 1.77 8.11 -51.92 -0.42 1.35 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -36.19 372.58 -6.34 -42.52 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.54 Total: -1.76 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.20 Total: 4.72 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.33 Total: -44.99 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.19 -6.34 -42.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689061185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.445 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds