Wall clock time and date at job start Tue Mar 31 2020 20:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00124 * 2 1 4 4 C 1.52997 * 109.47281 * 270.00299 * 3 2 1 5 5 N 1.46507 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99818 * 89.99866 * 5 4 3 7 7 C 1.34780 * 120.00152 * 270.00397 * 5 4 3 8 8 O 1.21519 * 119.99779 * 5.67388 * 7 5 4 9 9 C 1.48155 * 119.99861 * 185.67958 * 7 5 4 10 10 C 1.39716 * 120.18090 * 186.26922 * 9 7 5 11 11 C 1.38822 * 117.90019 * 179.75900 * 10 9 7 12 12 C 1.38577 * 118.06307 * 0.52874 * 11 10 9 13 13 N 1.32166 * 120.07002 * 359.70026 * 12 11 10 14 14 N 1.28351 * 122.30120 * 0.02825 * 13 12 11 15 15 C 1.34780 * 120.00029 * 180.02562 * 2 1 3 16 16 O 1.21279 * 119.99911 * 179.97438 * 15 2 1 17 17 C 1.50704 * 119.99847 * 359.97438 * 15 2 1 18 18 S 1.81000 * 109.46946 * 180.02562 * 17 15 2 19 19 C 1.76197 * 99.99923 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00050 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99801 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99791 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00050 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47151 * 90.00041 * 23 21 19 25 25 H 1.48498 * 109.46927 * 209.99985 * 23 21 19 26 26 H 1.48498 * 109.47008 * 329.99893 * 23 21 19 27 27 H 1.09003 * 109.47253 * 89.99724 * 1 2 3 28 28 H 1.09007 * 109.47178 * 209.99983 * 1 2 3 29 29 H 1.08999 * 109.47259 * 329.99298 * 1 2 3 30 30 H 1.09000 * 109.47372 * 149.99829 * 3 2 1 31 31 H 1.09007 * 109.47073 * 30.00335 * 3 2 1 32 32 H 1.09002 * 109.47356 * 60.00269 * 4 3 2 33 33 H 1.08996 * 109.47389 * 299.99675 * 4 3 2 34 34 H 1.09000 * 109.46906 * 95.49337 * 6 5 4 35 35 H 1.09002 * 109.47051 * 215.49326 * 6 5 4 36 36 H 1.08997 * 109.47178 * 335.49306 * 6 5 4 37 37 H 1.08004 * 121.04594 * 0.02562 * 10 9 7 38 38 H 1.07998 * 120.96611 * 180.23442 * 11 10 9 39 39 H 1.08000 * 119.96061 * 179.72853 * 12 11 10 40 40 H 1.08991 * 109.47200 * 300.00661 * 17 15 2 41 41 H 1.08998 * 109.46432 * 60.00747 * 17 15 2 42 42 H 0.97008 * 120.00230 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1845 2.9795 -1.4424 6 6 4.6495 2.9800 -1.4423 7 6 2.5102 4.1465 -1.4424 8 8 1.2994 4.1485 -1.3384 9 6 3.2450 5.4266 -1.5694 10 6 2.5674 6.6415 -1.4390 11 6 3.3033 7.8122 -1.5615 12 6 4.6612 7.7050 -1.8164 13 7 5.2216 6.5135 -1.9301 14 7 4.5503 5.4258 -1.8131 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8481 -0.0005 19 6 1.4415 -5.2082 -0.0013 20 1 0.3762 -5.0305 -0.0020 21 6 1.9283 -6.5081 -0.0020 22 7 1.0916 -7.5241 -0.0031 23 14 3.7708 -6.8154 -0.0030 24 1 4.2597 -6.8975 1.3968 25 1 4.0592 -8.0925 -0.7036 26 1 4.4582 -5.7006 -0.7028 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 3.1499 1.1384 0.5139 31 1 1.6084 2.0284 0.5139 32 1 1.5000 1.8408 -1.9563 33 1 3.0415 0.9509 -1.9563 34 1 5.0129 3.0785 -2.4652 35 1 5.0124 3.8169 -0.8456 36 1 5.0131 2.0451 -1.0159 37 1 1.5053 6.6688 -1.2446 38 1 2.8303 8.7784 -1.4657 39 1 5.2621 8.5962 -1.9218 40 1 0.7590 -2.5302 0.8896 41 1 0.7585 -2.5298 -0.8904 42 1 1.4317 -8.4326 -0.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689061185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:59 Heat of formation + Delta-G solvation = -9.195998 kcal Electronic energy + Delta-G solvation = -25851.304244 eV Core-core repulsion = 21958.634129 eV Total energy + Delta-G solvation = -3892.670115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.34163 -41.10653 -40.45519 -37.40707 -36.40275 -34.66845 -34.20409 -33.95336 -32.13066 -29.97235 -28.02429 -27.86000 -27.60848 -26.18090 -25.62603 -24.29262 -21.38362 -20.74017 -19.59223 -19.06942 -18.29459 -18.15565 -17.74460 -17.40615 -17.30631 -17.09143 -16.74181 -16.60882 -15.76980 -15.62362 -15.45433 -14.96620 -14.87223 -14.59493 -14.41192 -14.29260 -14.21416 -14.03787 -13.64391 -13.45581 -13.37590 -13.31277 -13.18347 -13.00825 -12.66390 -12.33001 -12.05765 -11.86134 -11.32281 -11.27341 -11.16756 -11.13832 -10.97679 -10.77145 -10.52575 -10.25465 -9.59001 -8.99756 -8.51098 -6.21996 -0.62659 -0.27132 0.96434 1.31725 1.37699 1.45958 1.49777 1.51957 1.66341 2.15688 2.25467 2.53632 2.68179 2.73312 2.87115 3.33511 3.48892 3.54277 3.73577 3.86887 3.91560 3.94770 4.12983 4.14635 4.23628 4.27726 4.35790 4.44958 4.51883 4.63307 4.69181 4.76066 4.83277 4.85187 4.92034 5.00872 5.16540 5.20865 5.47900 5.71119 6.05434 6.11871 6.18179 6.73731 6.93984 7.02878 7.47024 8.61151 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029839 B = 0.002015 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.143014 B =13891.337719 C =14668.123296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.111 3.889 4 C 0.107 3.893 5 N -0.591 5.591 6 C 0.089 3.911 7 C 0.570 3.430 8 O -0.552 6.552 9 C 0.003 3.997 10 C -0.074 4.074 11 C -0.099 4.099 12 C 0.061 3.939 13 N -0.279 5.279 14 N -0.225 5.225 15 C 0.534 3.466 16 O -0.555 6.555 17 C -0.107 4.107 18 S -0.175 6.175 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.236 1.236 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.171 0.829 38 H 0.204 0.796 39 H 0.217 0.783 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 36.154 -2.868 36.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.013 4.013 4 C -0.017 4.017 5 N -0.321 5.321 6 C -0.054 4.054 7 C 0.356 3.644 8 O -0.429 6.429 9 C -0.143 4.143 10 C -0.103 4.103 11 C -0.128 4.128 12 C -0.101 4.101 13 N -0.122 5.122 14 N -0.072 5.072 15 C 0.321 3.679 16 O -0.433 6.433 17 C -0.257 4.257 18 S 0.052 5.948 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.160 1.160 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.189 0.811 38 H 0.221 0.779 39 H 0.233 0.767 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.755 35.050 -3.081 35.505 hybrid contribution -2.257 -0.171 0.228 2.275 sum 2.498 34.879 -2.853 35.085 Atomic orbital electron populations 1.22132 0.76734 1.04773 1.03514 1.47729 1.08542 1.04389 1.73446 1.21736 0.98063 0.84469 0.97002 1.21842 0.98029 0.84174 0.97635 1.47750 1.08803 1.05003 1.70593 1.22199 0.76523 1.03283 1.03373 1.17971 0.86299 0.83266 0.76864 1.90777 1.13796 1.87034 1.51341 1.22694 0.93672 0.95486 1.02481 1.22685 1.03513 0.91150 0.92907 1.22989 0.94351 1.01096 0.94383 1.25217 0.95195 0.98474 0.91227 1.73132 1.31346 0.96555 1.11136 1.73624 1.05027 1.21328 1.07237 1.20060 0.87336 0.85180 0.75318 1.90675 1.15074 1.87347 1.50230 1.23289 1.01808 0.93453 1.07187 1.84684 1.13710 0.98846 1.97570 1.22452 0.94408 0.92495 1.58262 0.91924 1.25560 1.02741 0.94777 0.92910 1.70015 1.36758 0.99515 1.49114 0.85869 0.80232 0.80086 0.80203 1.18715 1.18377 1.16027 0.91056 0.90165 0.88682 0.90882 0.88773 0.89444 0.90267 0.91441 0.89117 0.90987 0.81102 0.77910 0.76689 0.86955 0.86950 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 10.28 127.77 1.31 2.62 16 2 N -0.61 -15.67 2.87 -846.74 -2.43 -18.11 16 3 C 0.11 2.61 5.77 86.38 0.50 3.11 16 4 C 0.11 2.44 5.66 86.38 0.49 2.93 16 5 N -0.59 -12.73 2.87 -849.83 -2.44 -15.17 16 6 C 0.09 1.71 9.12 127.77 1.16 2.88 16 7 C 0.57 12.52 7.65 86.88 0.66 13.18 16 8 O -0.55 -14.04 16.05 -3.77 -0.06 -14.10 16 9 C 0.00 0.05 6.63 41.99 0.28 0.33 16 10 C -0.07 -0.81 9.73 22.77 0.22 -0.59 16 11 C -0.10 -0.41 10.20 22.49 0.23 -0.18 16 12 C 0.06 0.41 11.31 84.72 0.96 1.37 16 13 N -0.28 -4.46 11.51 -57.15 -0.66 -5.12 16 14 N -0.23 -4.27 7.42 -48.49 -0.36 -4.63 16 15 C 0.53 18.66 7.69 87.66 0.67 19.33 16 16 O -0.56 -23.39 15.44 -3.03 -0.05 -23.43 16 17 C -0.11 -4.05 4.71 71.24 0.34 -3.72 16 18 S -0.17 -8.83 18.55 -56.49 -1.05 -9.88 16 19 C -0.53 -30.78 10.04 67.96 0.68 -30.10 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.05 2.68 5.50 84.86 0.47 3.14 16 22 N -0.92 -55.82 13.97 21.65 0.30 -55.51 16 23 Si 0.91 45.09 27.74 68.60 1.90 46.99 16 24 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.48 6.44 -2.38 -0.02 1.47 16 29 H 0.09 1.36 7.89 -2.39 -0.02 1.34 16 30 H 0.07 1.95 7.42 -2.39 -0.02 1.93 16 31 H 0.09 1.96 7.89 -2.38 -0.02 1.94 16 32 H 0.09 1.99 7.51 -2.39 -0.02 1.97 16 33 H 0.08 1.99 8.07 -2.39 -0.02 1.97 16 34 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 35 H 0.09 1.74 5.82 -2.39 -0.01 1.72 16 36 H 0.07 1.41 8.03 -2.39 -0.02 1.39 16 37 H 0.17 1.50 7.73 -2.91 -0.02 1.48 16 38 H 0.20 -1.02 8.06 -2.91 -0.02 -1.04 16 39 H 0.22 -0.39 8.06 -2.91 -0.02 -0.41 16 40 H 0.11 3.94 7.40 -2.40 -0.02 3.92 16 41 H 0.11 3.95 8.11 -2.40 -0.02 3.93 16 42 H 0.28 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -80.29 372.58 4.14 -76.15 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.00 Total: 8.50 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 7.98 Total: 14.32 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -5.59 Total: -98.54 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.11 Total: -37.54 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -80.29 4.14 -76.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689061185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.958 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds