Wall clock time and date at job start Tue Mar 31 2020 20:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21277 * 120.00190 * 2 1 4 4 N 1.34782 * 119.99857 * 179.97438 * 2 1 3 5 5 C 1.38906 * 119.99507 * 180.02562 * 4 2 1 6 6 N 1.29517 * 125.26185 * 180.02562 * 5 4 2 7 7 C 1.33635 * 115.66461 * 180.02562 * 6 5 4 8 8 C 1.47201 * 122.50174 * 179.97438 * 7 6 5 9 9 O 1.21646 * 119.99877 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00116 * 0.02562 * 8 7 6 11 11 C 1.47024 * 125.64599 * 359.96468 * 10 8 7 12 12 C 1.54320 * 107.27066 * 178.97565 * 11 10 8 13 13 C 1.55157 * 102.94170 * 337.80634 * 12 11 10 14 14 H 1.08996 * 111.03587 * 277.41199 * 13 12 11 15 15 C 1.53001 * 111.00666 * 153.57853 * 13 12 11 16 16 N 1.46490 * 109.47264 * 181.34660 * 15 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47421 * 125.65043 * 180.02562 * 10 8 7 26 26 C 1.34899 * 114.99811 * 0.24737 * 7 6 5 27 27 S 1.70976 * 109.19459 * 359.62971 * 26 7 6 28 28 H 1.09002 * 109.47709 * 270.00461 * 1 2 3 29 29 H 1.09001 * 109.47270 * 30.00567 * 1 2 3 30 30 H 1.09000 * 109.47335 * 150.00622 * 1 2 3 31 31 H 0.96991 * 119.99886 * 0.02562 * 4 2 1 32 32 H 1.09005 * 109.87989 * 298.38826 * 11 10 8 33 33 H 1.08996 * 109.88769 * 59.40156 * 11 10 8 34 34 H 1.09003 * 110.72341 * 219.44037 * 12 11 10 35 35 H 1.09007 * 110.72278 * 96.16798 * 12 11 10 36 36 H 1.09003 * 109.46836 * 61.34368 * 15 13 12 37 37 H 1.08999 * 109.47071 * 301.35407 * 15 13 12 38 38 H 0.97000 * 120.00577 * 0.02562 * 16 15 13 39 39 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 40 40 H 1.08993 * 110.37258 * 85.25174 * 25 10 8 41 41 H 1.08999 * 110.45582 * 322.97616 * 25 10 8 42 42 H 1.07998 * 125.40386 * 179.72058 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5698 -1.1672 0.0011 6 7 4.3176 -2.2247 0.0011 7 6 5.6353 -2.0018 0.0022 8 6 6.6222 -3.0939 0.0030 9 8 7.8116 -2.8389 0.0044 10 7 6.2080 -4.3765 0.0021 11 6 4.8078 -4.8247 0.0010 12 6 4.8206 -6.3676 -0.0261 13 6 6.2208 -6.6932 -0.6100 14 1 6.2143 -6.6338 -1.6983 15 6 6.7043 -8.0672 -0.1416 16 7 8.0398 -8.3262 -0.6851 17 6 8.6795 -9.5025 -0.3981 18 1 8.1993 -10.2394 0.2286 19 6 9.9452 -9.7478 -0.9126 20 7 10.5307 -8.8495 -1.6760 21 14 10.8175 -11.3527 -0.5217 22 1 12.1455 -11.3689 -1.1860 23 1 10.9980 -11.4727 0.9475 24 1 10.0027 -12.4919 -1.0150 25 6 7.0839 -5.5622 0.0032 26 6 5.9934 -0.7012 0.0084 27 16 4.5860 0.2695 0.0025 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6958 -2.0072 0.0005 32 1 4.3057 -4.4740 0.9027 33 1 4.2961 -4.4404 -0.8813 34 1 4.0334 -6.7485 -0.6767 35 1 4.7192 -6.7720 0.9811 36 1 6.0141 -8.8343 -0.4926 37 1 6.7452 -8.0861 0.9475 38 1 8.4713 -7.6643 -1.2477 39 1 10.0775 -8.0163 -1.8793 40 1 7.3758 -5.8174 1.0219 41 1 7.9671 -5.3841 -0.6103 42 1 7.0082 -0.3318 0.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690718686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:09 Heat of formation + Delta-G solvation = -0.548776 kcal Electronic energy + Delta-G solvation = -26181.069431 eV Core-core repulsion = 22288.774287 eV Total energy + Delta-G solvation = -3892.295144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03441 -40.40321 -38.94881 -37.49948 -35.45854 -34.86372 -32.35460 -31.36008 -30.29124 -29.62558 -28.65492 -26.37705 -24.59952 -23.58164 -22.44105 -22.10036 -21.61618 -20.04020 -19.43675 -18.55257 -17.70481 -17.33147 -17.15612 -16.60383 -16.42568 -15.93624 -15.52991 -15.06575 -14.76373 -14.40723 -14.24550 -13.74806 -13.65199 -13.53042 -13.39185 -13.23509 -13.02344 -12.82250 -12.56153 -12.44411 -12.07170 -11.75421 -11.50573 -11.02588 -10.82667 -10.74942 -10.67627 -10.49777 -10.35532 -10.18880 -9.98989 -9.93341 -9.72994 -9.12660 -8.85156 -8.76496 -8.43608 -6.97104 -6.05805 -3.05934 0.25240 0.63916 1.40686 1.41848 2.02136 2.10055 3.09478 3.31775 3.54435 3.58629 3.76190 3.88447 4.07943 4.47588 4.59888 4.64777 4.72155 4.79205 4.94936 5.02615 5.06753 5.11982 5.26157 5.41090 5.51986 5.64220 5.67063 5.82068 5.87348 5.94641 5.96767 6.10134 6.19611 6.26748 6.29538 6.46965 6.64421 6.78272 7.12280 7.14949 7.57440 7.83901 8.16966 8.80149 9.26937 10.13340 10.27919 11.42619 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.002147 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.311659 B =13039.891317 C =13927.284547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.512 3.488 3 O -0.510 6.510 4 N -0.621 5.621 5 C 0.243 3.757 6 N -0.470 5.470 7 C 0.036 3.964 8 C 0.601 3.399 9 O -0.533 6.533 10 N -0.601 5.601 11 C 0.120 3.880 12 C -0.129 4.129 13 C -0.107 4.107 14 H 0.083 0.917 15 C 0.171 3.829 16 N -0.744 5.744 17 C -0.333 4.333 18 H 0.064 0.936 19 C -0.046 4.046 20 N -0.942 5.942 21 Si 1.081 2.919 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.296 1.296 25 C 0.116 3.884 26 C -0.260 4.260 27 S 0.272 5.728 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.426 0.574 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.367 0.633 39 H 0.255 0.745 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.786 20.066 4.199 32.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.385 6.385 4 N -0.272 5.272 5 C -0.126 4.126 6 N -0.193 5.193 7 C -0.099 4.099 8 C 0.386 3.614 9 O -0.410 6.410 10 N -0.333 5.333 11 C -0.003 4.003 12 C -0.167 4.167 13 C -0.127 4.127 14 H 0.101 0.899 15 C 0.043 3.957 16 N -0.390 5.390 17 C -0.464 4.464 18 H 0.082 0.918 19 C -0.244 4.244 20 N -0.588 5.588 21 Si 0.912 3.088 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.006 4.006 26 C -0.403 4.403 27 S 0.524 5.476 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.266 0.734 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.201 0.799 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -23.929 20.539 4.093 31.799 hybrid contribution -0.998 -0.245 0.129 1.035 sum -24.927 20.293 4.222 32.419 Atomic orbital electron populations 1.21859 0.88466 1.06149 1.05925 1.21369 0.91726 0.82089 0.74902 1.90699 1.69569 1.30670 1.47521 1.42909 1.01512 1.11568 1.71234 1.24397 0.89857 0.93865 1.04481 1.67258 1.03282 1.28805 1.19980 1.19798 0.88546 0.93494 1.08038 1.16737 0.86599 0.80696 0.77353 1.90854 1.15886 1.83036 1.51227 1.48311 1.08897 1.04847 1.71275 1.22020 0.82134 0.93865 1.02305 1.22732 0.97654 0.94200 1.02148 1.22602 0.93898 0.95564 1.00589 0.89885 1.20520 0.87818 0.91213 0.96139 1.42380 1.15299 1.20474 1.60870 1.20007 1.01292 0.95534 1.29563 0.91765 1.25800 0.94700 1.05367 0.98511 1.70876 1.40041 1.08798 1.39072 0.83230 0.76178 0.73988 0.75413 1.21042 1.22280 1.22302 1.22350 0.93758 0.82631 1.01818 1.26925 1.07877 0.97637 1.07818 1.84877 0.91076 1.05375 1.66309 0.87671 0.87648 0.89159 0.73430 0.91212 0.91043 0.90096 0.90456 0.95733 0.95947 0.79945 0.93350 0.90848 0.90029 0.79231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.13 10.30 36.00 0.37 0.24 16 2 C 0.51 2.75 7.90 -10.99 -0.09 2.66 16 3 O -0.51 -4.64 14.61 5.56 0.08 -4.56 16 4 N -0.62 -3.53 5.40 -11.91 -0.06 -3.60 16 5 C 0.24 2.32 8.36 -87.53 -0.73 1.59 16 6 N -0.47 -5.44 7.59 -10.51 -0.08 -5.52 16 7 C 0.04 0.49 6.58 -84.63 -0.56 -0.06 16 8 C 0.60 10.22 7.82 -12.62 -0.10 10.13 16 9 O -0.53 -10.81 16.91 5.24 0.09 -10.72 16 10 N -0.60 -9.56 3.33 -171.86 -0.57 -10.13 16 11 C 0.12 1.48 5.45 -3.07 -0.02 1.47 16 12 C -0.13 -1.57 6.42 -24.90 -0.16 -1.73 16 13 C -0.11 -1.74 3.11 -88.46 -0.27 -2.02 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 15 C 0.17 3.44 5.71 -4.05 -0.02 3.42 16 16 N -0.74 -19.15 5.45 -59.91 -0.33 -19.48 16 17 C -0.33 -9.61 9.99 -15.06 -0.15 -9.76 16 18 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 20 N -0.94 -30.02 13.70 55.49 0.76 -29.26 16 21 Si 1.08 26.50 29.92 -169.99 -5.09 21.41 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.30 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.12 2.05 6.08 -2.52 -0.02 2.04 16 26 C -0.26 -3.09 10.55 29.55 0.31 -2.77 16 27 S 0.27 2.64 20.29 -107.50 -2.18 0.46 16 28 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 31 H 0.43 1.18 8.82 -40.82 -0.36 0.82 16 32 H 0.07 0.80 7.62 -51.93 -0.40 0.41 16 33 H 0.07 0.84 7.49 -51.93 -0.39 0.45 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 38 H 0.37 9.75 6.37 -40.82 -0.26 9.49 16 39 H 0.26 8.05 6.77 -40.82 -0.28 7.77 16 40 H 0.07 1.36 8.00 -51.93 -0.42 0.94 16 41 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 42 H 0.19 2.12 7.99 -52.49 -0.42 1.70 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -38.09 366.20 -8.90 -47.00 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.51 Total: 5.17 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.53 Total: 3.70 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -0.28 Total: -67.99 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.17 Total: -15.28 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -5.09 Total: 21.41 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.18 Total: 0.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.09 -8.90 -47.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690718686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.448 kcal (2) G-P(sol) polarization free energy of solvation -38.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds