Wall clock time and date at job start Tue Mar 31 2020 20:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21277 * 120.00190 * 2 1 4 4 N 1.34782 * 119.99857 * 179.97438 * 2 1 3 5 5 C 1.38906 * 119.99507 * 180.02562 * 4 2 1 6 6 N 1.29517 * 125.26185 * 180.02562 * 5 4 2 7 7 C 1.33635 * 115.66461 * 180.02562 * 6 5 4 8 8 C 1.47201 * 122.50174 * 179.97438 * 7 6 5 9 9 O 1.21646 * 119.99877 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00116 * 0.02562 * 8 7 6 11 11 C 1.47024 * 125.64599 * 359.96468 * 10 8 7 12 12 C 1.54320 * 107.27066 * 178.97565 * 11 10 8 13 13 C 1.55157 * 102.94170 * 337.80634 * 12 11 10 14 14 H 1.08996 * 111.03587 * 277.41199 * 13 12 11 15 15 C 1.53001 * 111.00666 * 153.57853 * 13 12 11 16 16 N 1.46490 * 109.47264 * 181.34660 * 15 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47421 * 125.65043 * 180.02562 * 10 8 7 26 26 C 1.34899 * 114.99811 * 0.24737 * 7 6 5 27 27 S 1.70976 * 109.19459 * 359.62971 * 26 7 6 28 28 H 1.09002 * 109.47709 * 270.00461 * 1 2 3 29 29 H 1.09001 * 109.47270 * 30.00567 * 1 2 3 30 30 H 1.09000 * 109.47335 * 150.00622 * 1 2 3 31 31 H 0.96991 * 119.99886 * 0.02562 * 4 2 1 32 32 H 1.09005 * 109.87989 * 298.38826 * 11 10 8 33 33 H 1.08996 * 109.88769 * 59.40156 * 11 10 8 34 34 H 1.09003 * 110.72341 * 219.44037 * 12 11 10 35 35 H 1.09007 * 110.72278 * 96.16798 * 12 11 10 36 36 H 1.09003 * 109.46836 * 61.34368 * 15 13 12 37 37 H 1.08999 * 109.47071 * 301.35407 * 15 13 12 38 38 H 0.97000 * 120.00577 * 0.02562 * 16 15 13 39 39 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 40 40 H 1.08993 * 110.37258 * 85.25174 * 25 10 8 41 41 H 1.08999 * 110.45582 * 322.97616 * 25 10 8 42 42 H 1.07998 * 125.40386 * 179.72058 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5698 -1.1672 0.0011 6 7 4.3176 -2.2247 0.0011 7 6 5.6353 -2.0018 0.0022 8 6 6.6222 -3.0939 0.0030 9 8 7.8116 -2.8389 0.0044 10 7 6.2080 -4.3765 0.0021 11 6 4.8078 -4.8247 0.0010 12 6 4.8206 -6.3676 -0.0261 13 6 6.2208 -6.6932 -0.6100 14 1 6.2143 -6.6338 -1.6983 15 6 6.7043 -8.0672 -0.1416 16 7 8.0398 -8.3262 -0.6851 17 6 8.6795 -9.5025 -0.3981 18 1 8.1993 -10.2394 0.2286 19 6 9.9452 -9.7478 -0.9126 20 7 10.5307 -8.8495 -1.6760 21 14 10.8175 -11.3527 -0.5217 22 1 12.1455 -11.3689 -1.1860 23 1 10.9980 -11.4727 0.9475 24 1 10.0027 -12.4919 -1.0150 25 6 7.0839 -5.5622 0.0032 26 6 5.9934 -0.7012 0.0084 27 16 4.5860 0.2695 0.0025 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6958 -2.0072 0.0005 32 1 4.3057 -4.4740 0.9027 33 1 4.2961 -4.4404 -0.8813 34 1 4.0334 -6.7485 -0.6767 35 1 4.7192 -6.7720 0.9811 36 1 6.0141 -8.8343 -0.4926 37 1 6.7452 -8.0861 0.9475 38 1 8.4713 -7.6643 -1.2477 39 1 10.0775 -8.0163 -1.8793 40 1 7.3758 -5.8174 1.0219 41 1 7.9671 -5.3841 -0.6103 42 1 7.0082 -0.3318 0.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690718686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:08 Heat of formation + Delta-G solvation = -28.733195 kcal Electronic energy + Delta-G solvation = -26182.291599 eV Core-core repulsion = 22288.774287 eV Total energy + Delta-G solvation = -3893.517312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87535 -41.23379 -39.97918 -38.83686 -36.76525 -36.07861 -34.07326 -32.04426 -31.77755 -30.18877 -30.05463 -27.77525 -25.97600 -25.11484 -23.85715 -22.90991 -22.44952 -21.44542 -20.37703 -19.61653 -19.19396 -18.48719 -17.88058 -17.75745 -17.19820 -17.05812 -16.69210 -16.41149 -16.03310 -15.74391 -15.26492 -15.22330 -15.13998 -14.71719 -14.50479 -14.16350 -13.95399 -13.65597 -13.40489 -13.22274 -13.13695 -12.99676 -12.80037 -12.56282 -12.28496 -12.23875 -12.00224 -11.86501 -11.70042 -11.49414 -11.27029 -11.22090 -10.96221 -10.93727 -10.53138 -9.88897 -9.41792 -9.13068 -8.41182 -5.35265 -0.60541 -0.12072 0.54276 0.58197 1.44565 1.45904 1.57522 1.68621 1.84665 1.89117 2.16395 2.71393 3.07569 3.37368 3.42597 3.59328 3.69973 3.77062 3.92326 4.05330 4.11942 4.26852 4.36111 4.43639 4.49017 4.51802 4.59727 4.67834 4.75084 4.84767 4.87779 4.93239 5.01588 5.10543 5.14835 5.20648 5.34387 5.57528 5.74606 6.29807 6.41652 6.46487 6.71688 6.88774 7.07284 7.97506 8.09207 9.10435 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.002147 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.311659 B =13039.891317 C =13927.284547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.510 3.490 3 O -0.549 6.549 4 N -0.608 5.608 5 C 0.247 3.753 6 N -0.476 5.476 7 C 0.016 3.984 8 C 0.592 3.408 9 O -0.582 6.582 10 N -0.602 5.602 11 C 0.123 3.877 12 C -0.113 4.113 13 C -0.097 4.097 14 H 0.077 0.923 15 C 0.170 3.830 16 N -0.760 5.760 17 C -0.333 4.333 18 H 0.072 0.928 19 C -0.110 4.110 20 N -0.976 5.976 21 Si 1.131 2.869 22 H -0.295 1.295 23 H -0.277 1.277 24 H -0.273 1.273 25 C 0.120 3.880 26 C -0.267 4.267 27 S 0.305 5.695 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.442 0.558 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.025 0.975 38 H 0.358 0.642 39 H 0.241 0.759 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.844 19.769 4.938 36.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.261 5.261 5 C -0.123 4.123 6 N -0.200 5.200 7 C -0.119 4.119 8 C 0.379 3.621 9 O -0.463 6.463 10 N -0.333 5.333 11 C 0.001 3.999 12 C -0.151 4.151 13 C -0.116 4.116 14 H 0.095 0.905 15 C 0.044 3.956 16 N -0.405 5.405 17 C -0.465 4.465 18 H 0.090 0.910 19 C -0.301 4.301 20 N -0.625 5.625 21 Si 0.955 3.045 22 H -0.221 1.221 23 H -0.203 1.203 24 H -0.199 1.199 25 C -0.003 4.003 26 C -0.411 4.411 27 S 0.558 5.442 28 H 0.142 0.858 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.285 0.715 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.190 0.810 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -28.119 20.224 4.856 34.975 hybrid contribution 0.102 -0.032 -0.066 0.126 sum -28.017 20.192 4.790 34.865 Atomic orbital electron populations 1.21960 0.84347 1.07656 1.07483 1.22369 0.93382 0.81068 0.73134 1.90678 1.70523 1.32067 1.49335 1.43105 0.99695 1.12857 1.70488 1.24655 0.91488 0.93349 1.02827 1.67183 1.02182 1.29378 1.21259 1.19422 0.89153 0.92747 1.10532 1.17289 0.86738 0.81586 0.76451 1.90810 1.18073 1.83874 1.53519 1.48414 1.10127 1.04111 1.70608 1.22213 0.80061 0.93919 1.03682 1.22755 0.95293 0.93906 1.03161 1.22424 0.96281 0.92720 1.00198 0.90456 1.20693 0.85410 0.93577 0.95933 1.42658 1.17307 1.19537 1.60999 1.20421 1.01378 0.96350 1.28317 0.91042 1.27342 0.96227 1.08014 0.98518 1.70999 1.40742 1.09188 1.41540 0.82601 0.74804 0.70956 0.76129 1.22141 1.20333 1.19893 1.22121 0.93481 0.84362 1.00368 1.27088 1.09115 0.97797 1.07074 1.84868 0.89451 1.04466 1.65437 0.85843 0.87401 0.86380 0.71477 0.89589 0.89812 0.86971 0.89265 0.94611 0.95716 0.81038 0.94861 0.92129 0.93722 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.36 10.30 71.23 0.73 1.10 16 2 C 0.51 3.99 7.90 87.65 0.69 4.69 16 3 O -0.55 -8.91 14.61 -3.02 -0.04 -8.95 16 4 N -0.61 -5.07 5.40 -309.99 -1.67 -6.74 16 5 C 0.25 4.23 8.36 179.27 1.50 5.73 16 6 N -0.48 -10.34 7.59 -187.15 -1.42 -11.76 16 7 C 0.02 0.44 6.58 40.46 0.27 0.71 16 8 C 0.59 21.02 7.82 86.60 0.68 21.70 16 9 O -0.58 -25.35 16.91 -4.18 -0.07 -25.42 16 10 N -0.60 -19.42 3.33 -815.89 -2.71 -22.13 16 11 C 0.12 2.78 5.45 86.73 0.47 3.25 16 12 C -0.11 -2.43 6.42 31.78 0.20 -2.23 16 13 C -0.10 -3.11 3.11 -9.40 -0.03 -3.14 16 14 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 15 C 0.17 6.76 5.71 86.38 0.49 7.25 16 16 N -0.76 -39.89 5.45 -343.47 -1.87 -41.77 16 17 C -0.33 -19.33 9.99 84.03 0.84 -18.49 16 18 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 19 C -0.11 -6.65 5.50 84.86 0.47 -6.19 16 20 N -0.98 -64.07 13.70 21.65 0.30 -63.77 16 21 Si 1.13 53.41 29.92 68.60 2.05 55.46 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 C 0.12 4.42 6.08 86.86 0.53 4.94 16 26 C -0.27 -6.47 10.55 67.05 0.71 -5.76 16 27 S 0.31 5.64 20.29 -56.49 -1.15 4.49 16 28 H 0.12 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H 0.44 0.73 8.82 -92.72 -0.82 -0.08 16 32 H 0.09 1.73 7.62 -2.38 -0.02 1.71 16 33 H 0.08 1.74 7.49 -2.39 -0.02 1.73 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.77 8.04 -2.38 -0.02 1.75 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.02 0.99 8.10 -2.39 -0.02 0.97 16 38 H 0.36 19.91 6.37 -92.71 -0.59 19.32 16 39 H 0.24 15.94 6.77 -92.71 -0.63 15.32 16 40 H 0.06 2.35 8.00 -2.39 -0.02 2.33 16 41 H 0.04 1.95 8.04 -2.39 -0.02 1.93 16 42 H 0.19 4.47 7.99 -2.91 -0.02 4.44 16 Total: -1.00 -86.66 366.20 0.77 -85.89 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.19 Total: 21.15 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 7.55 Total: 13.56 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -7.38 Total: -146.17 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.11 Total: -34.38 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 2.05 Total: 55.46 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.15 Total: 4.49 kcal Total: -86.66 0.77 -85.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690718686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.156 kcal (2) G-P(sol) polarization free energy of solvation -86.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds