Wall clock time and date at job start Tue Mar 31 2020 20:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99879 * 2 1 4 4 C 1.52999 * 109.47445 * 274.75302 * 3 2 1 5 5 H 1.09002 * 112.73184 * 316.03215 * 4 3 2 6 6 C 1.53490 * 113.46763 * 86.85125 * 4 3 2 7 7 C 1.53242 * 83.43051 * 140.67886 * 6 4 3 8 8 N 1.47064 * 113.46528 * 185.29035 * 4 3 2 9 9 C 1.36933 * 136.06036 * 38.06587 * 8 4 3 10 10 H 1.07998 * 120.00436 * 354.64594 * 9 8 4 11 11 C 1.38819 * 120.00213 * 174.92595 * 9 8 4 12 12 N 1.31617 * 119.99637 * 359.71955 * 11 9 8 13 13 Si 1.86797 * 120.00141 * 179.72337 * 11 9 8 14 14 H 1.48500 * 109.47173 * 59.99951 * 13 11 9 15 15 H 1.48494 * 109.46822 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47125 * 299.99723 * 13 11 9 17 17 C 1.34775 * 119.99693 * 180.02562 * 2 1 3 18 18 O 1.21278 * 119.99553 * 175.09082 * 17 2 1 19 19 C 1.50699 * 120.00384 * 355.08459 * 17 2 1 20 20 O 1.42900 * 109.47226 * 179.97438 * 19 17 2 21 21 C 1.35920 * 116.99848 * 180.02562 * 20 19 17 22 22 C 1.38720 * 120.04367 * 359.72824 * 21 20 19 23 23 C 1.38144 * 119.95503 * 179.77194 * 22 21 20 24 24 C 1.38367 * 120.04253 * 0.50032 * 23 22 21 25 25 Cl 1.73600 * 119.95692 * 179.77241 * 24 23 22 26 26 C 1.38365 * 120.08414 * 359.75491 * 24 23 22 27 27 C 1.38144 * 120.04662 * 359.97438 * 26 24 23 28 28 H 1.08994 * 109.47536 * 89.99347 * 1 2 3 29 29 H 1.09002 * 109.46889 * 210.00330 * 1 2 3 30 30 H 1.09004 * 109.46946 * 329.98918 * 1 2 3 31 31 H 1.08998 * 109.47259 * 154.74769 * 3 2 1 32 32 H 1.09001 * 109.47170 * 34.75506 * 3 2 1 33 33 H 1.08995 * 114.20637 * 254.43406 * 6 4 3 34 34 H 1.09003 * 114.20558 * 27.06683 * 6 4 3 35 35 H 1.08989 * 113.38574 * 219.29164 * 7 6 4 36 36 H 1.08995 * 113.46921 * 88.92464 * 7 6 4 37 37 H 0.96996 * 120.00176 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47174 * 300.00492 * 19 17 2 39 39 H 1.09007 * 109.46630 * 60.00237 * 19 17 2 40 40 H 1.08001 * 120.02098 * 0.02562 * 22 21 20 41 41 H 1.07998 * 119.97692 * 180.25840 * 23 22 21 42 42 H 1.08000 * 119.97717 * 179.97438 * 26 24 23 43 43 H 1.07998 * 120.02252 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3490 1.7702 -1.4375 5 1 2.6347 0.9797 -2.1315 6 6 1.1579 2.6090 -1.9210 7 6 2.2492 3.4542 -2.5866 8 7 3.1797 2.9784 -1.5517 9 6 4.3160 3.4539 -0.9536 10 1 4.7595 2.9137 -0.1303 11 6 4.8947 4.6335 -1.4016 12 7 4.3543 5.2920 -2.4049 13 14 6.4404 5.2862 -0.5806 14 1 7.5283 4.2831 -0.7050 15 1 6.8553 6.5501 -1.2405 16 1 6.1667 5.5440 0.8560 17 6 2.1388 -1.1672 -0.0005 18 8 3.3483 -1.1691 -0.0904 19 6 1.3895 -2.4700 0.1107 20 8 2.3173 -3.5566 0.0873 21 6 1.8011 -4.8107 0.1784 22 6 0.4305 -4.9909 0.2939 23 6 -0.0925 -6.2665 0.3817 24 6 0.7506 -7.3635 0.3650 25 17 0.0913 -8.9653 0.4814 26 6 2.1183 -7.1856 0.2552 27 6 2.6448 -5.9118 0.1615 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5140 31 1 3.1841 1.1187 0.4384 32 1 1.6479 2.0055 0.5858 33 1 0.5016 2.0915 -2.6206 34 1 0.6196 3.1218 -1.1239 35 1 2.0566 4.5258 -2.5376 36 1 2.5075 3.1172 -3.5905 37 1 4.7583 6.1164 -2.7178 38 1 0.8307 -2.4889 1.0464 39 1 0.6987 -2.5644 -0.7272 40 1 -0.2275 -4.1347 0.3110 41 1 -1.1598 -6.4074 0.4674 42 1 2.7748 -8.0430 0.2427 43 1 3.7124 -5.7733 0.0763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691069112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:35 Heat of formation + Delta-G solvation = 17.961230 kcal Electronic energy + Delta-G solvation = -26032.281837 eV Core-core repulsion = 22106.452890 eV Total energy + Delta-G solvation = -3925.828947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77684 -39.70170 -38.23126 -37.68124 -36.49666 -35.32713 -32.19303 -31.69549 -30.60959 -29.42717 -27.93901 -27.69096 -26.12911 -23.48816 -23.39833 -22.76905 -21.99428 -19.42348 -19.15247 -18.85511 -17.13392 -17.00124 -16.87849 -16.51977 -16.21180 -15.71638 -15.15265 -14.91275 -14.68175 -14.17815 -13.97796 -13.83686 -13.70846 -13.47737 -13.09918 -12.97741 -12.71686 -12.64767 -12.54466 -12.14760 -11.86111 -11.70145 -11.50065 -11.15108 -11.12406 -11.05972 -10.91284 -10.74684 -10.44793 -9.87705 -9.86531 -9.75141 -9.56311 -9.44550 -8.77239 -8.53092 -8.41325 -6.86061 -5.74633 -3.06550 0.77805 0.81804 1.78848 2.33798 2.56329 3.19391 3.35014 3.42762 3.47067 3.48693 4.18169 4.32470 4.40604 4.49233 4.55940 4.70077 4.73618 4.91857 4.94883 5.05970 5.17988 5.28272 5.45753 5.46945 5.48950 5.53169 5.58417 5.75613 5.79076 5.82968 5.92302 6.10382 6.14578 6.25144 6.38152 6.46893 6.65768 6.82708 6.91970 7.23803 7.37610 7.41490 7.57914 8.00473 8.17254 9.07061 9.73288 10.66638 11.43475 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.001925 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.945305 B =14539.301203 C =15257.308189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.607 5.607 3 C 0.116 3.884 4 C 0.133 3.867 5 H 0.043 0.957 6 C -0.168 4.168 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.217 4.217 10 H 0.081 0.919 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.510 3.490 18 O -0.508 6.508 19 C 0.042 3.958 20 O -0.284 6.284 21 C 0.140 3.860 22 C -0.201 4.201 23 C -0.068 4.068 24 C -0.077 4.077 25 Cl -0.075 7.075 26 C -0.069 4.069 27 C -0.137 4.137 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.254 0.746 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.146 -23.230 6.262 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.342 5.342 3 C -0.006 4.006 4 C 0.024 3.976 5 H 0.061 0.939 6 C -0.206 4.206 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.344 4.344 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.742 3.258 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.295 3.705 18 O -0.382 6.382 19 C -0.037 4.037 20 O -0.195 6.195 21 C 0.094 3.906 22 C -0.220 4.220 23 C -0.087 4.087 24 C -0.103 4.103 25 Cl -0.046 7.046 26 C -0.087 4.087 27 C -0.155 4.155 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.036 -23.032 6.256 27.688 hybrid contribution 0.479 0.265 0.238 0.597 sum -13.557 -22.767 6.494 27.282 Atomic orbital electron populations 1.21869 0.79659 1.02986 1.02291 1.47775 1.06946 1.06052 1.73448 1.21972 0.97464 0.81754 0.99439 1.22418 0.90514 0.91209 0.93427 0.93944 1.23708 0.96256 0.99981 1.00671 1.21873 0.85150 0.98542 0.91216 1.45674 1.28330 1.15800 1.42785 1.18879 1.00162 1.04485 1.10877 0.90174 1.24809 0.99154 0.98240 0.98207 1.69831 1.41102 1.17733 1.28086 0.86208 0.83032 0.78058 0.78546 1.21088 1.21592 1.21054 1.19883 0.88093 0.84446 0.78098 1.90803 1.13695 1.86560 1.47132 1.22632 0.92082 0.85396 1.03553 1.86219 1.34540 1.11412 1.87378 1.19172 0.91955 0.84884 0.94623 1.21237 0.94031 0.98202 1.08516 1.20827 0.99992 0.90454 0.97394 1.20788 0.93686 0.86176 1.09690 1.98366 1.86117 1.23272 1.96829 1.20881 0.93150 0.97202 0.97505 1.20455 1.00703 0.89341 1.05040 0.92024 0.91792 0.90318 0.89644 0.90151 0.92812 0.90573 0.91619 0.95724 0.93646 0.88907 0.88874 0.84430 0.84599 0.84167 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.30 59.85 0.62 1.23 16 2 N -0.61 -8.15 2.87 -181.57 -0.52 -8.67 16 3 C 0.12 2.03 5.41 -4.04 -0.02 2.01 16 4 C 0.13 2.71 4.32 -72.40 -0.31 2.39 16 5 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 6 C -0.17 -3.00 8.00 -26.35 -0.21 -3.21 16 7 C 0.16 3.72 7.26 -8.64 -0.06 3.66 16 8 N -0.60 -15.48 3.65 -177.17 -0.65 -16.13 16 9 C -0.22 -6.16 10.55 -15.06 -0.16 -6.32 16 10 H 0.08 2.23 7.83 -52.49 -0.41 1.81 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -27.70 11.65 55.49 0.65 -27.05 16 13 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.51 7.57 7.74 -10.99 -0.09 7.48 16 18 O -0.51 -10.36 16.05 -14.35 -0.23 -10.59 16 19 C 0.04 0.42 3.68 36.01 0.13 0.55 16 20 O -0.28 -3.57 9.67 -39.40 -0.38 -3.95 16 21 C 0.14 1.42 6.69 -39.22 -0.26 1.16 16 22 C -0.20 -1.56 9.04 -39.44 -0.36 -1.92 16 23 C -0.07 -0.50 9.82 -39.57 -0.39 -0.89 16 24 C -0.08 -0.62 6.32 -39.49 -0.25 -0.87 16 25 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 26 C -0.07 -0.55 9.82 -39.57 -0.39 -0.94 16 27 C -0.14 -1.27 9.99 -39.44 -0.39 -1.67 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.32 6.44 -51.93 -0.33 -0.01 16 30 H 0.08 0.59 7.94 -51.93 -0.41 0.18 16 31 H 0.09 1.77 7.35 -51.93 -0.38 1.38 16 32 H 0.08 1.30 7.69 -51.93 -0.40 0.90 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 35 H 0.07 1.69 7.38 -51.94 -0.38 1.30 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 0.65 7.08 -51.93 -0.37 0.28 16 39 H 0.09 0.69 7.58 -51.93 -0.39 0.29 16 40 H 0.14 0.73 6.30 -52.49 -0.33 0.40 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -35.45 376.74 -10.14 -45.59 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.92 Total: -2.76 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.24 Total: 2.36 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.52 Total: -51.85 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.61 Total: -14.54 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.45 -10.14 -45.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691069112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.551 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds