Wall clock time and date at job start Tue Mar 31 2020 20:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99879 * 2 1 4 4 C 1.52999 * 109.47445 * 274.75302 * 3 2 1 5 5 H 1.09002 * 112.73184 * 316.03215 * 4 3 2 6 6 C 1.53490 * 113.46763 * 86.85125 * 4 3 2 7 7 C 1.53242 * 83.43051 * 140.67886 * 6 4 3 8 8 N 1.47064 * 113.46528 * 185.29035 * 4 3 2 9 9 C 1.36933 * 136.06036 * 38.06587 * 8 4 3 10 10 H 1.07998 * 120.00436 * 354.64594 * 9 8 4 11 11 C 1.38819 * 120.00213 * 174.92595 * 9 8 4 12 12 N 1.31617 * 119.99637 * 359.71955 * 11 9 8 13 13 Si 1.86797 * 120.00141 * 179.72337 * 11 9 8 14 14 H 1.48500 * 109.47173 * 59.99951 * 13 11 9 15 15 H 1.48494 * 109.46822 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47125 * 299.99723 * 13 11 9 17 17 C 1.34775 * 119.99693 * 180.02562 * 2 1 3 18 18 O 1.21278 * 119.99553 * 175.09082 * 17 2 1 19 19 C 1.50699 * 120.00384 * 355.08459 * 17 2 1 20 20 O 1.42900 * 109.47226 * 179.97438 * 19 17 2 21 21 C 1.35920 * 116.99848 * 180.02562 * 20 19 17 22 22 C 1.38720 * 120.04367 * 359.72824 * 21 20 19 23 23 C 1.38144 * 119.95503 * 179.77194 * 22 21 20 24 24 C 1.38367 * 120.04253 * 0.50032 * 23 22 21 25 25 Cl 1.73600 * 119.95692 * 179.77241 * 24 23 22 26 26 C 1.38365 * 120.08414 * 359.75491 * 24 23 22 27 27 C 1.38144 * 120.04662 * 359.97438 * 26 24 23 28 28 H 1.08994 * 109.47536 * 89.99347 * 1 2 3 29 29 H 1.09002 * 109.46889 * 210.00330 * 1 2 3 30 30 H 1.09004 * 109.46946 * 329.98918 * 1 2 3 31 31 H 1.08998 * 109.47259 * 154.74769 * 3 2 1 32 32 H 1.09001 * 109.47170 * 34.75506 * 3 2 1 33 33 H 1.08995 * 114.20637 * 254.43406 * 6 4 3 34 34 H 1.09003 * 114.20558 * 27.06683 * 6 4 3 35 35 H 1.08989 * 113.38574 * 219.29164 * 7 6 4 36 36 H 1.08995 * 113.46921 * 88.92464 * 7 6 4 37 37 H 0.96996 * 120.00176 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47174 * 300.00492 * 19 17 2 39 39 H 1.09007 * 109.46630 * 60.00237 * 19 17 2 40 40 H 1.08001 * 120.02098 * 0.02562 * 22 21 20 41 41 H 1.07998 * 119.97692 * 180.25840 * 23 22 21 42 42 H 1.08000 * 119.97717 * 179.97438 * 26 24 23 43 43 H 1.07998 * 120.02252 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3490 1.7702 -1.4375 5 1 2.6347 0.9797 -2.1315 6 6 1.1579 2.6090 -1.9210 7 6 2.2492 3.4542 -2.5866 8 7 3.1797 2.9784 -1.5517 9 6 4.3160 3.4539 -0.9536 10 1 4.7595 2.9137 -0.1303 11 6 4.8947 4.6335 -1.4016 12 7 4.3543 5.2920 -2.4049 13 14 6.4404 5.2862 -0.5806 14 1 7.5283 4.2831 -0.7050 15 1 6.8553 6.5501 -1.2405 16 1 6.1667 5.5440 0.8560 17 6 2.1388 -1.1672 -0.0005 18 8 3.3483 -1.1691 -0.0904 19 6 1.3895 -2.4700 0.1107 20 8 2.3173 -3.5566 0.0873 21 6 1.8011 -4.8107 0.1784 22 6 0.4305 -4.9909 0.2939 23 6 -0.0925 -6.2665 0.3817 24 6 0.7506 -7.3635 0.3650 25 17 0.0913 -8.9653 0.4814 26 6 2.1183 -7.1856 0.2552 27 6 2.6448 -5.9118 0.1615 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5140 31 1 3.1841 1.1187 0.4384 32 1 1.6479 2.0055 0.5858 33 1 0.5016 2.0915 -2.6206 34 1 0.6196 3.1218 -1.1239 35 1 2.0566 4.5258 -2.5376 36 1 2.5075 3.1172 -3.5905 37 1 4.7583 6.1164 -2.7178 38 1 0.8307 -2.4889 1.0464 39 1 0.6987 -2.5644 -0.7272 40 1 -0.2275 -4.1347 0.3110 41 1 -1.1598 -6.4074 0.4674 42 1 2.7748 -8.0430 0.2427 43 1 3.7124 -5.7733 0.0763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691069112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:34 Heat of formation + Delta-G solvation = -3.926596 kcal Electronic energy + Delta-G solvation = -26033.230965 eV Core-core repulsion = 22106.452890 eV Total energy + Delta-G solvation = -3926.778075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60966 -40.76057 -39.69823 -38.55488 -37.11837 -36.52509 -34.30103 -32.31443 -31.45285 -30.38855 -29.91847 -28.61667 -27.12843 -25.43185 -24.28334 -23.71711 -23.02358 -21.08378 -20.35624 -19.56009 -18.73916 -17.99030 -17.77160 -17.52054 -17.20026 -16.91002 -16.57028 -16.09591 -15.82821 -15.50096 -15.22720 -14.88777 -14.54762 -14.38712 -14.29040 -13.97053 -13.83423 -13.68252 -13.43708 -13.20513 -13.13609 -12.96590 -12.82632 -12.65502 -12.46270 -12.32044 -12.27313 -11.84385 -11.73988 -11.70906 -11.62580 -11.23192 -10.87509 -10.86176 -10.14081 -9.66723 -9.18084 -8.92792 -7.93781 -5.26171 0.16863 0.21957 1.18979 1.41026 1.44709 1.46274 1.49599 1.51835 2.40919 2.53155 2.58638 3.27386 3.36545 3.47287 3.73191 3.83049 3.84331 3.94873 4.06760 4.15040 4.20427 4.30557 4.34206 4.40735 4.49007 4.54152 4.71912 4.81961 4.92494 4.92859 4.94227 4.98527 5.04411 5.08736 5.18444 5.22022 5.23771 5.43078 5.52625 5.54098 5.73216 5.92891 6.20742 6.39843 6.90322 7.09484 7.58197 8.59619 9.24156 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.001925 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.945305 B =14539.301203 C =15257.308189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.601 5.601 3 C 0.130 3.870 4 C 0.132 3.868 5 H 0.022 0.978 6 C -0.123 4.123 7 C 0.146 3.854 8 N -0.632 5.632 9 C -0.225 4.225 10 H 0.075 0.925 11 C -0.067 4.067 12 N -0.952 5.952 13 Si 0.976 3.024 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.271 1.271 17 C 0.500 3.500 18 O -0.581 6.581 19 C 0.049 3.951 20 O -0.321 6.321 21 C 0.119 3.881 22 C -0.192 4.192 23 C -0.067 4.067 24 C -0.085 4.085 25 Cl -0.072 7.072 26 C -0.071 4.071 27 C -0.155 4.155 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.038 0.962 36 H 0.007 0.993 37 H 0.249 0.751 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.170 0.830 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.614 -24.646 7.383 31.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.334 5.334 3 C 0.006 3.994 4 C 0.025 3.975 5 H 0.039 0.961 6 C -0.161 4.161 7 C 0.021 3.979 8 N -0.359 5.359 9 C -0.354 4.354 10 H 0.093 0.907 11 C -0.260 4.260 12 N -0.600 5.600 13 Si 0.803 3.197 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.197 1.197 17 C 0.288 3.712 18 O -0.460 6.460 19 C -0.029 4.029 20 O -0.234 6.234 21 C 0.074 3.926 22 C -0.211 4.211 23 C -0.086 4.086 24 C -0.111 4.111 25 Cl -0.043 7.043 26 C -0.090 4.090 27 C -0.174 4.174 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.187 0.813 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.587 -24.486 7.394 31.041 hybrid contribution 1.510 0.596 -0.137 1.629 sum -16.077 -23.890 7.258 29.697 Atomic orbital electron populations 1.22329 0.75639 1.05763 1.04148 1.47816 1.09159 1.04159 1.72305 1.21514 0.96563 0.84249 0.97084 1.22505 0.90505 0.89555 0.94952 0.96084 1.23459 0.94664 0.97231 1.00718 1.21939 0.87512 0.97853 0.90625 1.46095 1.28239 1.18327 1.43206 1.19163 1.01045 1.04408 1.10756 0.90686 1.25625 1.02269 0.98813 0.99260 1.70004 1.42423 1.17975 1.29636 0.85199 0.79277 0.77057 0.78122 1.21131 1.21586 1.19712 1.20884 0.87594 0.86343 0.76413 1.90771 1.17059 1.87707 1.50498 1.22752 0.91112 0.82063 1.06931 1.86167 1.36388 1.12671 1.88146 1.19373 0.93235 0.83938 0.96066 1.21524 0.93123 0.99421 1.07032 1.21145 1.01122 0.89976 0.96323 1.20983 0.93861 0.86697 1.09601 1.98369 1.85986 1.23185 1.96806 1.21012 0.93683 0.97087 0.97201 1.20570 1.00717 0.90096 1.06000 0.90515 0.87688 0.89117 0.93901 0.88355 0.88663 0.88394 0.94388 0.97473 0.94211 0.84970 0.85328 0.81288 0.82205 0.82944 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 10.30 127.77 1.32 2.01 16 2 N -0.60 -14.81 2.87 -846.76 -2.43 -17.24 16 3 C 0.13 4.49 5.41 86.38 0.47 4.96 16 4 C 0.13 5.37 4.32 41.79 0.18 5.55 16 5 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 6 C -0.12 -4.09 8.00 30.84 0.25 -3.84 16 7 C 0.15 7.00 7.26 83.09 0.60 7.61 16 8 N -0.63 -33.47 3.65 -714.44 -2.61 -36.08 16 9 C -0.23 -13.24 10.55 84.04 0.89 -12.36 16 10 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 11 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 12 N -0.95 -59.11 11.65 21.65 0.25 -58.85 16 13 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 14 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 15 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 16 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 17 C 0.50 14.36 7.74 87.66 0.68 15.04 16 18 O -0.58 -24.79 16.05 16.01 0.26 -24.53 16 19 C 0.05 0.83 3.68 71.24 0.26 1.09 16 20 O -0.32 -7.77 9.67 -73.61 -0.71 -8.48 16 21 C 0.12 2.24 6.69 22.50 0.15 2.39 16 22 C -0.19 -2.30 9.04 22.36 0.20 -2.10 16 23 C -0.07 -0.77 9.82 22.28 0.22 -0.55 16 24 C -0.08 -1.20 6.32 22.33 0.14 -1.06 16 25 Cl -0.07 -0.97 28.95 -2.72 -0.08 -1.05 16 26 C -0.07 -1.08 9.82 22.28 0.22 -0.86 16 27 C -0.15 -2.87 9.99 22.36 0.22 -2.64 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.35 6.44 -2.39 -0.02 0.34 16 30 H 0.09 0.86 7.94 -2.39 -0.02 0.85 16 31 H 0.04 1.85 7.35 -2.39 -0.02 1.83 16 32 H 0.10 3.01 7.69 -2.39 -0.02 2.99 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.10 2.89 7.93 -2.39 -0.02 2.87 16 35 H 0.04 2.00 7.38 -2.39 -0.02 1.98 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.13 1.16 7.08 -2.39 -0.02 1.15 16 39 H 0.13 1.25 7.58 -2.38 -0.02 1.23 16 40 H 0.17 0.82 6.30 -2.91 -0.02 0.80 16 41 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 42 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -84.78 376.74 3.99 -80.79 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.02 Total: 3.93 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.26 Total: 11.76 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -4.79 Total: -112.17 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.45 Total: -33.01 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -84.78 3.99 -80.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691069112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.864 kcal (2) G-P(sol) polarization free energy of solvation -84.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds