Wall clock time and date at job start Tue Mar 31 2020 20:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00306 * 2 1 4 4 C 1.53003 * 109.46720 * 270.27337 * 3 2 1 5 5 H 1.09000 * 112.74114 * 43.12702 * 4 3 2 6 6 C 1.53494 * 113.51900 * 272.33042 * 4 3 2 7 7 C 1.53764 * 83.25708 * 218.97653 * 6 4 3 8 8 N 1.47064 * 87.88456 * 26.24023 * 7 6 4 9 9 C 1.36937 * 136.05696 * 152.96353 * 8 7 6 10 10 H 1.07995 * 120.00377 * 176.66687 * 9 8 7 11 11 C 1.38820 * 119.99723 * 356.39004 * 9 8 7 12 12 N 1.31612 * 119.99843 * 0.27896 * 11 9 8 13 13 Si 1.86798 * 119.99771 * 180.27315 * 11 9 8 14 14 H 1.48508 * 109.46984 * 90.00172 * 13 11 9 15 15 H 1.48501 * 109.47363 * 210.00112 * 13 11 9 16 16 H 1.48495 * 109.47382 * 330.00555 * 13 11 9 17 17 C 1.34780 * 120.00056 * 179.97438 * 2 1 3 18 18 O 1.21274 * 120.00327 * 180.02562 * 17 2 1 19 19 C 1.50702 * 119.99625 * 0.02562 * 17 2 1 20 20 O 1.42907 * 109.47092 * 180.02562 * 19 17 2 21 21 C 1.35924 * 117.00031 * 180.02562 * 20 19 17 22 22 C 1.38721 * 120.04156 * 359.72039 * 21 20 19 23 23 C 1.38148 * 119.95240 * 179.77031 * 22 21 20 24 24 C 1.38362 * 120.04399 * 0.51054 * 23 22 21 25 25 Cl 1.73602 * 119.95866 * 179.76737 * 24 23 22 26 26 C 1.38361 * 120.08613 * 359.74092 * 24 23 22 27 27 C 1.38154 * 120.04492 * 0.02562 * 26 24 23 28 28 H 1.09010 * 109.46879 * 93.32989 * 1 2 3 29 29 H 1.09002 * 109.47413 * 213.33113 * 1 2 3 30 30 H 1.09002 * 109.47148 * 333.33340 * 1 2 3 31 31 H 1.08997 * 109.46918 * 150.27477 * 3 2 1 32 32 H 1.09003 * 109.46861 * 30.27081 * 3 2 1 33 33 H 1.08997 * 114.20811 * 332.73425 * 6 4 3 34 34 H 1.09004 * 114.20586 * 105.36805 * 6 4 3 35 35 H 1.08997 * 113.46444 * 271.50486 * 7 6 4 36 36 H 1.08996 * 113.54857 * 140.98952 * 7 6 4 37 37 H 0.97000 * 120.00003 * 180.02562 * 12 11 9 38 38 H 1.09004 * 109.47328 * 299.99824 * 19 17 2 39 39 H 1.09001 * 109.47494 * 60.00278 * 19 17 2 40 40 H 1.07992 * 120.02365 * 0.02619 * 22 21 20 41 41 H 1.07998 * 119.97233 * 180.25325 * 23 22 21 42 42 H 1.08003 * 119.98199 * 180.02562 * 26 24 23 43 43 H 1.07994 * 120.02455 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4465 1.7137 -1.4425 5 1 1.5731 1.5815 -2.0810 6 6 3.7370 1.1420 -2.0458 7 6 3.8492 2.5415 -2.6728 8 7 3.0513 3.0502 -1.5470 9 6 2.9234 4.2444 -0.8892 10 1 2.1943 4.3507 -0.0997 11 6 3.7350 5.3168 -1.2335 12 7 4.6236 5.1873 -2.1957 13 14 3.5657 6.9436 -0.3311 14 1 4.4734 6.9544 0.8443 15 1 3.9266 8.0567 -1.2454 16 1 2.1628 7.1129 0.1254 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 8 2.3139 -3.5585 0.0017 21 6 1.7943 -4.8146 0.0013 22 6 0.4192 -4.9973 0.0057 23 6 -0.1069 -6.2746 0.0005 24 6 0.7367 -7.3713 0.0016 25 17 0.0732 -8.9755 0.0012 26 6 2.1085 -7.1911 0.0026 27 6 2.6386 -5.9153 0.0029 28 1 -0.3633 -0.0597 -1.0260 29 1 -0.3634 -0.8586 0.5647 30 1 -0.3633 0.9184 0.4612 31 1 3.1520 1.1371 0.5095 32 1 1.6105 2.0271 0.5181 33 1 4.5104 0.9139 -1.3125 34 1 3.5764 0.3400 -2.7664 35 1 3.3455 2.6274 -3.6356 36 1 4.8677 2.9292 -2.6932 37 1 5.1909 5.9364 -2.4360 38 1 0.7583 -2.5299 0.8903 39 1 0.7590 -2.5303 -0.8897 40 1 -0.2396 -4.1416 0.0090 41 1 -1.1775 -6.4172 -0.0002 42 1 2.7655 -8.0483 0.0030 43 1 3.7093 -5.7750 0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691069115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:40 Heat of formation + Delta-G solvation = 18.811317 kcal Electronic energy + Delta-G solvation = -26119.343011 eV Core-core repulsion = 22193.550926 eV Total energy + Delta-G solvation = -3925.792085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.76888 -39.69618 -38.16253 -37.60725 -36.49251 -35.34187 -32.21062 -31.69105 -30.59337 -29.40010 -27.89022 -27.67377 -26.13456 -23.46516 -23.34130 -22.76627 -21.98544 -19.34941 -19.11835 -18.85067 -17.13014 -16.99944 -16.84729 -16.53300 -16.19596 -15.69005 -15.20471 -14.90684 -14.64904 -14.07115 -13.97984 -13.82868 -13.79340 -13.43254 -13.08478 -12.98411 -12.81663 -12.60486 -12.24909 -12.11079 -12.01030 -11.69731 -11.48280 -11.14854 -11.09733 -11.04328 -10.87131 -10.74246 -10.39843 -9.85310 -9.75475 -9.72624 -9.56083 -9.45985 -8.77815 -8.52777 -8.38584 -6.86127 -5.74732 -3.08546 0.78006 0.82024 1.79060 2.34481 2.58922 3.19602 3.35550 3.38692 3.42875 3.45198 4.18367 4.32650 4.40311 4.46391 4.56115 4.70508 4.74549 4.92108 4.95554 5.06197 5.24400 5.27802 5.46017 5.47078 5.52925 5.55342 5.60178 5.78933 5.83057 5.86761 5.97430 6.04180 6.12083 6.40813 6.48295 6.62650 6.77729 6.81913 6.92695 7.27563 7.38438 7.51820 7.63386 8.00831 8.19164 9.03715 9.71398 10.66694 11.41924 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.001854 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.940796 B =15100.593419 C =15455.076669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.117 3.883 4 C 0.130 3.870 5 H 0.040 0.960 6 C -0.154 4.154 7 C 0.147 3.853 8 N -0.601 5.601 9 C -0.220 4.220 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.917 5.917 13 Si 0.912 3.088 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.512 3.488 18 O -0.505 6.505 19 C 0.041 3.959 20 O -0.283 6.283 21 C 0.140 3.860 22 C -0.201 4.201 23 C -0.068 4.068 24 C -0.077 4.077 25 Cl -0.075 7.075 26 C -0.069 4.069 27 C -0.136 4.136 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.020 0.980 36 H 0.074 0.926 37 H 0.253 0.747 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 -24.884 4.873 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.005 4.005 4 C 0.022 3.978 5 H 0.057 0.943 6 C -0.193 4.193 7 C 0.022 3.978 8 N -0.327 5.327 9 C -0.347 4.347 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.563 5.563 13 Si 0.742 3.258 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.297 3.703 18 O -0.379 6.379 19 C -0.037 4.037 20 O -0.195 6.195 21 C 0.094 3.906 22 C -0.220 4.220 23 C -0.087 4.087 24 C -0.103 4.103 25 Cl -0.046 7.046 26 C -0.088 4.088 27 C -0.155 4.155 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.431 -24.562 4.949 27.540 hybrid contribution -0.750 0.935 0.291 1.233 sum -12.181 -23.627 5.241 27.093 Atomic orbital electron populations 1.21873 0.79823 1.03245 1.02013 1.47801 1.06828 1.06199 1.73481 1.22011 0.97346 0.81659 0.99531 1.22443 0.95151 0.87155 0.93062 0.94274 1.23672 0.98253 0.97137 1.00224 1.22163 0.97972 0.87950 0.89726 1.45620 1.46220 1.05938 1.34891 1.18855 1.16258 0.86606 1.12961 0.90333 1.24800 0.98508 0.98199 0.98887 1.69836 1.24284 1.30874 1.31339 0.86136 0.77527 0.83363 0.78783 1.21492 1.21659 1.20745 1.19811 0.88165 0.84322 0.78032 1.90777 1.13221 1.86615 1.47259 1.22639 0.92059 0.85457 1.03571 1.86215 1.34223 1.11250 1.87789 1.19169 0.91898 0.84875 0.94676 1.21240 0.93962 0.98164 1.08630 1.20827 1.00020 0.90464 0.97368 1.20785 0.93594 0.86113 1.09850 1.98366 1.85965 1.23052 1.97219 1.20882 0.93095 0.97199 0.97576 1.20451 1.00672 0.89305 1.05101 0.92230 0.91757 0.90240 0.89376 0.90510 0.89923 0.93376 0.96174 0.90722 0.93647 0.89061 0.88885 0.84450 0.84622 0.84173 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.23 59.84 0.61 1.25 16 2 N -0.61 -8.16 2.87 -181.57 -0.52 -8.68 16 3 C 0.12 2.05 5.41 -4.04 -0.02 2.03 16 4 C 0.13 2.66 4.31 -72.39 -0.31 2.35 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.15 -3.24 7.48 -26.08 -0.19 -3.43 16 7 C 0.15 3.63 7.49 -8.37 -0.06 3.57 16 8 N -0.60 -15.41 3.65 -176.83 -0.64 -16.05 16 9 C -0.22 -6.05 10.55 -15.06 -0.16 -6.21 16 10 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.50 11.45 55.49 0.64 -26.86 16 13 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.51 7.32 7.75 -10.98 -0.09 7.23 16 18 O -0.51 -9.57 15.52 -14.35 -0.22 -9.80 16 19 C 0.04 0.41 3.82 36.01 0.14 0.54 16 20 O -0.28 -3.45 9.67 -39.41 -0.38 -3.83 16 21 C 0.14 1.39 6.69 -39.22 -0.26 1.13 16 22 C -0.20 -1.55 9.04 -39.44 -0.36 -1.91 16 23 C -0.07 -0.50 9.82 -39.57 -0.39 -0.89 16 24 C -0.08 -0.62 6.32 -39.49 -0.25 -0.87 16 25 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 26 C -0.07 -0.54 9.82 -39.57 -0.39 -0.93 16 27 C -0.14 -1.23 9.99 -39.43 -0.39 -1.63 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.35 6.58 -51.93 -0.34 0.01 16 30 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 31 H 0.09 1.76 7.13 -51.93 -0.37 1.39 16 32 H 0.08 1.31 7.87 -51.93 -0.41 0.90 16 33 H 0.08 1.84 7.93 -51.93 -0.41 1.43 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 2.04 6.98 -51.93 -0.36 1.67 16 37 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.09 0.63 6.91 -51.93 -0.36 0.27 16 39 H 0.09 0.69 7.64 -51.93 -0.40 0.29 16 40 H 0.14 0.74 6.30 -52.49 -0.33 0.40 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -34.22 375.25 -10.12 -44.34 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.89 Total: -1.64 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.22 Total: 1.94 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.53 Total: -51.60 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.60 Total: -13.62 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.22 -10.12 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691069115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.148 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds