Wall clock time and date at job start Tue Mar 31 2020 20:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21285 * 120.00230 * 2 1 4 4 N 1.34780 * 120.00226 * 180.02562 * 2 1 3 5 5 C 1.47062 * 120.80029 * 179.97438 * 4 2 1 6 6 C 1.53295 * 108.60784 * 115.31048 * 5 4 2 7 7 C 1.50992 * 108.95790 * 45.06357 * 6 5 4 8 8 S 1.75959 * 126.02852 * 162.31687 * 7 6 5 9 9 C 1.70908 * 90.30364 * 179.63406 * 8 7 6 10 10 C 1.50706 * 124.92348 * 180.08570 * 9 8 7 11 11 N 1.46899 * 109.46752 * 269.99874 * 10 9 8 12 12 C 1.46904 * 110.99393 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46809 * 179.97438 * 12 11 10 14 14 O 1.21292 * 120.00301 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99927 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99710 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00422 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99522 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00488 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99874 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46784 * 90.00122 * 20 18 16 22 22 H 1.48497 * 109.47068 * 209.99659 * 20 18 16 23 23 H 1.48490 * 109.47038 * 330.00508 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 9 8 7 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 9 8 26 26 C 1.47032 * 120.79813 * 0.02647 * 4 2 1 27 27 H 1.09003 * 109.47345 * 239.99673 * 1 2 3 28 28 H 1.08998 * 109.47202 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47519 * 119.99891 * 1 2 3 30 30 H 1.09000 * 109.61084 * 355.58151 * 5 4 2 31 31 H 1.08993 * 109.62093 * 235.05151 * 5 4 2 32 32 H 1.08995 * 109.56075 * 285.21909 * 6 5 4 33 33 H 1.09002 * 109.55673 * 164.90458 * 6 5 4 34 34 H 1.08997 * 109.47196 * 30.00065 * 10 9 8 35 35 H 1.08993 * 109.46898 * 150.00160 * 10 9 8 36 36 H 1.00899 * 111.00494 * 56.05456 * 11 10 9 37 37 H 1.09001 * 109.47622 * 300.00248 * 12 11 10 38 38 H 1.09005 * 109.46896 * 60.00666 * 12 11 10 39 39 H 0.96996 * 120.00313 * 0.02562 * 15 13 12 40 40 H 0.97002 * 120.00503 * 180.02562 * 19 18 16 41 41 H 1.08991 * 109.82279 * 105.66759 * 26 4 2 42 42 H 1.09007 * 109.80660 * 344.76649 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6513 -1.1877 -0.0011 6 6 4.1323 -1.8158 1.3119 7 6 3.3157 -3.0548 1.5910 8 16 3.7442 -4.3476 2.7051 9 6 2.2956 -5.1699 2.3225 10 6 1.8699 -6.4888 2.9146 11 7 2.3819 -7.5865 2.0835 12 6 1.9860 -8.8906 2.6318 13 6 2.5275 -9.9897 1.7544 14 8 3.1794 -9.7139 0.7695 15 7 2.2881 -11.2793 2.0647 16 6 2.7812 -12.2792 1.2667 17 1 3.3617 -12.0336 0.3897 18 6 2.5340 -13.6086 1.5863 19 7 1.8273 -13.9076 2.6531 20 14 3.2052 -14.9711 0.4987 21 1 4.5548 -15.3660 0.9761 22 1 2.2966 -16.1442 0.5574 23 1 3.2978 -14.4862 -0.9017 24 7 1.6210 -4.4993 1.4559 25 6 2.1297 -3.3538 1.0283 26 6 1.4636 -2.4507 -0.0017 27 1 -0.3634 -0.5139 0.8900 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 4.0314 -0.1691 -0.0801 31 1 4.0088 -1.7806 -0.8429 32 1 4.0034 -1.1029 2.1262 33 1 5.1849 -2.0849 1.2236 34 1 2.2705 -6.5800 3.9241 35 1 0.7816 -6.5368 2.9498 36 1 3.3840 -7.5265 1.9822 37 1 2.3878 -8.9983 3.6394 38 1 0.8984 -8.9556 2.6654 39 1 1.7671 -11.5000 2.8525 40 1 1.6550 -14.8357 2.8765 41 1 1.5253 -2.9077 -0.9892 42 1 0.4195 -2.2905 0.2675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691802398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:13 Heat of formation + Delta-G solvation = -19.181727 kcal Electronic energy + Delta-G solvation = -25499.645376 eV Core-core repulsion = 21606.542247 eV Total energy + Delta-G solvation = -3893.103129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89174 -39.56412 -38.33776 -36.82120 -35.45830 -33.88168 -33.18222 -31.31411 -30.91543 -29.89711 -28.33957 -26.15738 -25.71925 -23.97158 -23.40911 -22.40019 -20.21695 -19.35772 -18.52447 -18.41939 -17.90436 -17.05396 -16.66142 -16.34039 -15.99918 -15.49144 -15.35595 -14.82902 -14.64576 -14.48880 -14.11189 -14.02239 -13.87145 -13.67769 -13.40737 -13.18683 -12.94600 -12.84254 -12.68674 -12.55362 -12.31063 -11.94164 -11.71597 -11.59003 -11.53116 -11.45579 -11.05962 -10.40983 -10.29488 -10.24228 -9.76988 -9.53558 -9.44506 -9.21139 -8.89445 -8.55685 -8.17145 -7.99125 -6.44073 -3.84957 0.44390 1.07544 1.50156 2.18589 2.43080 2.49829 3.16300 3.25315 3.31404 3.63663 3.86964 4.09060 4.11553 4.30889 4.40060 4.45523 4.58569 4.72899 4.82180 4.87119 4.92848 4.98622 5.02482 5.10140 5.12377 5.23593 5.30288 5.42220 5.43913 5.50872 5.54005 5.70484 5.84303 5.89324 5.91157 6.19903 6.88703 6.99133 7.44834 7.53167 7.55235 7.70333 8.03351 8.58234 9.15325 9.51027 10.02249 10.73521 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.001855 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.984873 B =15092.610574 C =15240.745024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.520 3.480 3 O -0.545 6.545 4 N -0.615 5.615 5 C 0.114 3.886 6 C -0.056 4.056 7 C -0.221 4.221 8 S 0.127 5.873 9 C 0.070 3.930 10 C 0.134 3.866 11 N -0.659 5.659 12 C 0.051 3.949 13 C 0.441 3.559 14 O -0.582 6.582 15 N -0.562 5.562 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 N -0.450 5.450 25 C 0.046 3.954 26 C 0.193 3.807 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.350 0.650 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.095 0.905 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 24.680 1.813 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.309 3.691 3 O -0.422 6.422 4 N -0.349 5.349 5 C -0.010 4.010 6 C -0.096 4.096 7 C -0.343 4.343 8 S 0.385 5.615 9 C -0.210 4.210 10 C 0.001 3.999 11 N -0.293 5.293 12 C -0.081 4.081 13 C 0.226 3.774 14 O -0.466 6.466 15 N -0.199 5.199 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 N -0.164 5.164 25 C -0.087 4.087 26 C 0.067 3.933 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.170 0.830 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.648 24.798 1.308 24.841 hybrid contribution 0.125 -0.775 0.283 0.835 sum -0.524 24.023 1.591 24.081 Atomic orbital electron populations 1.21984 0.91347 1.05715 1.04566 1.20819 0.90781 0.82571 0.74912 1.90718 1.70815 1.30758 1.49907 1.48139 1.07081 1.05876 1.73852 1.21655 0.79495 1.03158 0.96693 1.20525 0.98506 0.91791 0.98795 1.25878 1.00842 1.02468 1.05105 1.83971 1.23696 1.13258 1.40566 1.26654 0.94579 1.01125 0.98592 1.20510 1.02329 0.83943 0.93068 1.60029 1.19375 1.00087 1.49829 1.21703 1.01692 0.88593 0.96116 1.19720 0.86079 0.83533 0.88094 1.90536 1.43916 1.82783 1.29396 1.41846 1.47934 1.04063 1.26039 1.19703 1.30720 0.84758 1.07715 0.87900 1.25269 0.97078 0.98508 0.97086 1.69607 1.39140 1.19925 1.25567 0.85850 0.78422 0.79793 0.80187 1.20423 1.20901 1.19390 1.65667 1.34299 1.05538 1.10870 1.20897 0.93193 0.93665 1.00971 1.20293 0.95706 0.80752 0.96552 0.89118 0.88775 0.88975 0.87750 0.90260 0.89673 0.88970 0.92988 0.87758 0.83010 0.93445 0.89072 0.77411 0.91845 0.88716 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 8.72 36.00 0.31 -0.64 16 2 C 0.52 4.72 7.81 -10.99 -0.09 4.64 16 3 O -0.54 -6.97 16.51 5.55 0.09 -6.88 16 4 N -0.62 -5.11 2.92 -173.04 -0.50 -5.62 16 5 C 0.11 0.88 6.41 -3.58 -0.02 0.86 16 6 C -0.06 -0.43 6.44 -27.59 -0.18 -0.61 16 7 C -0.22 -2.25 6.43 -35.44 -0.23 -2.47 16 8 S 0.13 1.32 23.17 -107.50 -2.49 -1.17 16 9 C 0.07 0.87 6.90 -13.60 -0.09 0.78 16 10 C 0.13 1.63 6.26 -4.97 -0.03 1.60 16 11 N -0.66 -10.51 6.11 -116.33 -0.71 -11.22 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.83 16 13 C 0.44 10.22 7.82 -10.98 -0.09 10.13 16 14 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 15 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 16 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 20 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 N -0.45 -5.90 10.51 -7.27 -0.08 -5.98 16 25 C 0.05 0.51 6.87 -82.80 -0.57 -0.06 16 26 C 0.19 1.55 6.65 -4.10 -0.03 1.52 16 27 H 0.09 0.40 7.57 -51.93 -0.39 0.00 16 28 H 0.09 0.50 8.12 -51.93 -0.42 0.07 16 29 H 0.09 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.10 0.84 7.01 -51.93 -0.36 0.48 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.35 5.79 8.42 -39.29 -0.33 5.45 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.11 0.68 6.15 -51.93 -0.32 0.36 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -34.78 369.73 -9.13 -43.92 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.46 Total: 10.09 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -1.28 Total: 8.65 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.63 Total: -60.38 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.18 Total: -22.54 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.49 Total: -1.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.78 -9.13 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691802398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.735 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds